Wall clock time and date at job start Mon Mar 8 2021 07:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33323 * 125.94829 * 2 1 4 4 C 1.50700 * 122.71367 * 0.04449 * 3 2 1 5 5 O 1.42903 * 109.46985 * 29.99834 * 4 3 2 6 6 Si 1.86304 * 109.47492 * 149.99616 * 4 3 2 7 7 N 1.32124 * 114.58053 * 180.02562 * 3 2 1 8 8 C 1.29683 * 116.86353 * 0.02562 * 7 3 2 9 9 N 1.38609 * 124.94818 * 179.97438 * 8 7 3 10 10 C 1.46507 * 120.00066 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46856 * 179.97438 * 10 9 8 12 12 H 1.08998 * 112.84604 * 45.34353 * 11 10 9 13 13 C 1.53788 * 113.61024 * 176.52976 * 11 10 9 14 14 C 1.53780 * 87.07878 * 139.98316 * 13 11 10 15 15 H 1.08994 * 113.61695 * 220.01681 * 14 13 11 16 16 N 1.46500 * 113.61342 * 89.19900 * 14 13 11 17 17 C 1.34945 * 126.04219 * 274.71637 * 16 14 13 18 18 C 1.35320 * 107.75012 * 179.83608 * 17 16 14 19 19 C 1.39871 * 107.91579 * 0.42356 * 18 17 16 20 20 N 1.30833 * 108.20608 * 359.74092 * 19 18 17 21 21 C 1.53780 * 113.61721 * 274.13620 * 11 10 9 22 22 S 1.70968 * 110.10323 * 0.02562 * 8 7 3 23 23 H 1.09008 * 109.47054 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47418 * 299.99420 * 1 2 3 25 25 H 1.09003 * 109.46961 * 60.00328 * 1 2 3 26 26 H 1.08999 * 109.47291 * 270.00091 * 4 3 2 27 27 H 0.96696 * 114.00144 * 179.97438 * 5 4 3 28 28 H 1.48496 * 109.99925 * 300.00641 * 6 4 3 29 29 H 1.48507 * 109.99451 * 61.31947 * 6 4 3 30 30 H 0.96995 * 120.00445 * 0.02816 * 9 8 7 31 31 H 1.08997 * 109.47383 * 300.00374 * 10 9 8 32 32 H 1.09005 * 109.46493 * 60.00392 * 10 9 8 33 33 H 1.08994 * 113.61594 * 254.53582 * 13 11 10 34 34 H 1.08997 * 113.61127 * 25.35412 * 13 11 10 35 35 H 1.08007 * 126.12370 * 359.97438 * 17 16 14 36 36 H 1.07995 * 126.03716 * 180.15748 * 18 17 16 37 37 H 1.08001 * 125.89460 * 179.75631 * 19 18 17 38 38 H 1.08997 * 113.61686 * 334.57561 * 21 11 10 39 39 H 1.08998 * 113.60935 * 105.47800 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0010 5 8 0.4816 2.5018 0.6754 6 14 2.9327 3.6146 0.8791 7 7 3.5850 0.8189 -0.0005 8 6 3.9315 -0.4308 -0.0015 9 7 5.2385 -0.8924 -0.0027 10 6 5.5067 -2.3327 -0.0043 11 6 7.0181 -2.5700 -0.0060 12 1 7.5464 -1.9388 0.7086 13 6 7.4086 -4.0551 0.0775 14 6 8.5161 -3.7401 -0.9419 15 1 8.6486 -4.5156 -1.6962 16 7 9.7786 -3.3232 -0.3267 17 6 10.1002 -2.0692 0.0543 18 6 11.3472 -2.1044 0.5786 19 6 11.8071 -3.4234 0.5069 20 7 10.8677 -4.1548 -0.0357 21 6 7.6411 -2.5638 -1.4120 22 16 2.5413 -1.4260 -0.0025 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6085 2.8219 -1.0264 27 1 0.0695 3.3756 0.7146 28 1 3.1224 3.1632 2.2810 29 1 4.2370 3.6285 0.1691 30 1 5.9755 -0.2619 -0.0024 31 1 5.0685 -2.7849 0.8854 32 1 5.0675 -2.7830 -0.8946 33 1 7.7870 -4.3527 1.0554 34 1 6.6421 -4.7301 -0.3031 35 1 9.4735 -1.1946 -0.0401 36 1 11.8926 -1.2620 0.9775 37 1 12.7710 -3.7769 0.8418 38 1 6.9390 -2.8303 -2.2019 39 1 8.2071 -1.6593 -1.6347 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945880_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:34 Heat of formation + Delta-G solvation = 133.347270 kcal Electronic energy + Delta-G solvation = -22231.500324 eV Core-core repulsion = 18884.657071 eV Total energy + Delta-G solvation = -3346.843254 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47539 -41.11728 -40.10227 -37.87340 -36.62528 -33.23611 -32.27720 -31.09311 -29.82551 -28.25798 -26.96885 -25.68727 -24.75115 -24.06188 -22.42520 -21.84717 -20.62979 -20.16859 -19.38266 -18.17128 -17.98083 -17.40352 -16.91774 -16.66957 -16.18497 -15.82447 -15.72322 -15.53169 -15.35569 -14.88146 -14.60289 -14.27986 -14.09829 -13.96003 -13.82755 -13.69173 -13.39786 -13.34698 -13.06768 -13.03727 -12.35828 -12.24474 -11.92000 -11.82822 -11.67086 -11.54633 -11.11256 -10.78581 -10.44285 -10.42848 -10.05614 -9.59356 -8.71567 -4.96184 -0.10516 0.04192 0.63675 0.86534 1.27276 1.46405 1.67228 1.76335 1.81173 1.85664 2.20282 3.04742 3.14921 3.24830 3.45345 3.54966 3.83942 3.95321 3.96209 4.03726 4.10723 4.22946 4.29948 4.33275 4.42704 4.51247 4.57549 4.59363 4.65796 4.78612 4.79892 4.83411 4.86845 4.89123 5.03111 5.05639 5.12406 5.33633 5.49974 5.67093 6.09071 6.16753 6.68918 6.76885 6.94840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.244 4.244 3 C 0.072 3.928 4 C -0.034 4.034 5 O -0.552 6.552 6 Si 0.810 3.190 7 N -0.585 5.585 8 C 0.305 3.695 9 N -0.688 5.688 10 C 0.133 3.867 11 C -0.113 4.113 12 H 0.098 0.902 13 C -0.127 4.127 14 C 0.120 3.880 15 H 0.112 0.888 16 N -0.360 5.360 17 C 0.052 3.948 18 C -0.289 4.289 19 C 0.034 3.966 20 N -0.338 5.338 21 C -0.126 4.126 22 S 0.128 5.872 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.407 0.593 28 H -0.324 1.324 29 H -0.302 1.302 30 H 0.413 0.587 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.196 0.804 36 H 0.163 0.837 37 H 0.201 0.799 38 H 0.127 0.873 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 2.129 -2.015 4.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.367 4.367 3 C -0.057 4.057 4 C -0.147 4.147 5 O -0.362 6.362 6 Si 0.718 3.282 7 N -0.315 5.315 8 C -0.066 4.066 9 N -0.329 5.329 10 C 0.010 3.990 11 C -0.132 4.132 12 H 0.117 0.883 13 C -0.166 4.166 14 C 0.018 3.982 15 H 0.130 0.870 16 N -0.143 5.143 17 C -0.094 4.094 18 C -0.318 4.318 19 C -0.151 4.151 20 N -0.159 5.159 21 C -0.164 4.164 22 S 0.377 5.623 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.260 0.740 28 H -0.253 1.253 29 H -0.230 1.230 30 H 0.251 0.749 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.213 0.787 36 H 0.180 0.820 37 H 0.217 0.783 38 H 0.145 0.855 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.894 -0.557 -1.996 3.559 hybrid contribution 0.815 1.215 0.272 1.488 sum -2.079 0.658 -1.724 2.779 Atomic orbital electron populations 1.20105 0.85023 1.01951 1.04046 1.25507 1.02588 0.92690 1.15955 1.19414 0.86519 0.96723 1.03018 1.23974 0.93524 0.94600 1.02583 1.86387 1.33142 1.37907 1.78800 0.95350 0.76239 0.82780 0.73849 1.65761 1.18029 1.18151 1.29512 1.23516 0.93115 0.91325 0.98670 1.44065 1.00861 1.08124 1.79833 1.21688 0.96167 0.78021 1.03127 1.22763 0.93723 0.98227 0.98506 0.88345 1.23371 0.97476 0.96128 0.99647 1.22324 0.79266 1.00233 0.96402 0.86980 1.48607 1.12684 1.05632 1.47346 1.22946 0.97930 0.89849 0.98670 1.21885 0.97594 0.98742 1.13622 1.24379 0.99482 0.93054 0.98211 1.77333 0.96260 1.19645 1.22669 1.23547 0.97882 0.97480 0.97462 1.83723 0.95466 1.09537 1.73614 0.91741 0.89520 0.90196 0.88260 0.74033 1.25332 1.23021 0.74871 0.90939 0.89497 0.91650 0.85486 0.78697 0.81971 0.78271 0.85526 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.10 8.91 71.24 0.63 0.53 16 2 C -0.24 -1.57 6.50 24.57 0.16 -1.42 16 3 C 0.07 0.62 5.95 41.40 0.25 0.87 16 4 C -0.03 -0.07 2.93 71.24 0.21 0.13 16 5 O -0.55 0.79 9.80 -148.98 -1.46 -0.67 16 6 Si 0.81 2.43 32.08 68.60 2.20 4.63 16 7 N -0.59 -6.24 8.95 -189.86 -1.70 -7.93 16 8 C 0.30 1.77 8.24 179.32 1.48 3.25 16 9 N -0.69 0.41 5.71 -350.99 -2.01 -1.59 16 10 C 0.13 -0.82 5.36 86.38 0.46 -0.36 16 11 C -0.11 0.86 3.33 -10.27 -0.03 0.83 16 12 H 0.10 -0.62 7.00 -2.39 -0.02 -0.63 16 13 C -0.13 0.77 7.44 31.12 0.23 1.00 16 14 C 0.12 -0.38 5.19 45.58 0.24 -0.15 16 15 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 16 N -0.36 -1.08 3.79 -324.71 -1.23 -2.31 16 17 C 0.05 0.03 9.63 83.54 0.80 0.83 16 18 C -0.29 -0.69 10.80 21.99 0.24 -0.45 16 19 C 0.03 0.17 12.02 85.24 1.02 1.19 16 20 N -0.34 -2.93 12.58 -57.02 -0.72 -3.65 16 21 C -0.13 1.03 6.89 31.18 0.21 1.25 16 22 S 0.13 0.42 22.32 -56.49 -1.26 -0.84 16 23 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 24 H 0.09 0.23 6.73 -2.39 -0.02 0.21 16 25 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 26 H 0.10 -0.18 7.96 -2.39 -0.02 -0.20 16 27 H 0.41 -5.01 8.74 -74.06 -0.65 -5.66 16 28 H -0.32 -4.19 7.11 99.48 0.71 -3.48 16 29 H -0.30 -3.30 7.11 99.48 0.71 -2.59 16 30 H 0.41 -0.65 8.60 -92.71 -0.80 -1.45 16 31 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.09 -0.72 7.87 -2.38 -0.02 -0.73 16 33 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.13 -1.28 8.10 -2.39 -0.02 -1.29 16 35 H 0.20 -1.17 6.67 -2.91 -0.02 -1.19 16 36 H 0.16 -0.26 8.06 -2.91 -0.02 -0.28 16 37 H 0.20 -0.08 8.06 -2.91 -0.02 -0.11 16 38 H 0.13 -1.39 7.92 -2.39 -0.02 -1.41 16 39 H 0.08 -0.67 6.96 -2.39 -0.02 -0.68 16 Total: 0.00 -24.68 336.03 -0.59 -25.27 By element: Atomic # 1 Polarization: -20.10 SS G_CDS: -0.32 Total: -20.42 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 5.91 Total: 7.52 kcal Atomic # 7 Polarization: -9.83 SS G_CDS: -5.65 Total: -15.49 kcal Atomic # 8 Polarization: 0.79 SS G_CDS: -1.46 Total: -0.67 kcal Atomic # 14 Polarization: 2.43 SS G_CDS: 2.20 Total: 4.63 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.26 Total: -0.84 kcal Total: -24.68 -0.59 -25.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945880_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.616 kcal (2) G-P(sol) polarization free energy of solvation -24.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds