Wall clock time and date at job start Mon Mar 8 2021 07:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47018 * 2 1 4 4 C 1.50699 * 109.47450 * 120.00095 * 2 1 3 5 5 C 1.37980 * 120.32777 * 245.02380 * 4 2 1 6 6 N 1.32005 * 120.90321 * 179.71727 * 5 4 2 7 7 C 1.32336 * 121.64243 * 0.52938 * 6 5 4 8 8 N 1.39152 * 119.71911 * 179.75004 * 7 6 5 9 9 C 1.46504 * 119.99681 * 359.72559 * 8 7 6 10 10 C 1.52995 * 109.46766 * 179.97438 * 9 8 7 11 11 H 1.08995 * 112.85412 * 43.80511 * 10 9 8 12 12 C 1.53785 * 113.61100 * 175.00257 * 10 9 8 13 13 C 1.53781 * 87.08277 * 140.06519 * 12 10 9 14 14 H 1.09002 * 113.61228 * 220.01683 * 13 12 10 15 15 N 1.46500 * 113.61711 * 89.19510 * 13 12 10 16 16 C 1.34948 * 126.04121 * 276.24807 * 15 13 12 17 17 C 1.35313 * 107.74870 * 179.84046 * 16 15 13 18 18 C 1.39872 * 107.91990 * 0.41922 * 17 16 15 19 19 N 1.30840 * 108.20152 * 359.74151 * 18 17 16 20 20 C 1.53776 * 113.69177 * 272.53131 * 10 9 8 21 21 C 1.39349 * 120.56615 * 359.47256 * 7 6 5 22 22 F 1.35101 * 120.47192 * 180.27841 * 21 7 6 23 23 C 1.38439 * 119.05054 * 0.25755 * 21 7 6 24 24 H 0.96701 * 114.00388 * 299.99883 * 1 2 3 25 25 H 1.09009 * 109.47269 * 240.00094 * 2 1 3 26 26 H 1.48505 * 110.00139 * 178.68320 * 3 2 1 27 27 H 1.48500 * 110.00341 * 300.00093 * 3 2 1 28 28 H 1.08008 * 119.55049 * 359.97438 * 5 4 2 29 29 H 0.97000 * 120.00114 * 179.72387 * 8 7 6 30 30 H 1.08993 * 109.47068 * 60.00020 * 9 8 7 31 31 H 1.08997 * 109.46834 * 299.99884 * 9 8 7 32 32 H 1.08993 * 113.61827 * 25.50878 * 12 10 9 33 33 H 1.09006 * 113.68471 * 254.62104 * 12 10 9 34 34 H 1.08000 * 126.12316 * 359.97438 * 16 15 13 35 35 H 1.07997 * 126.04317 * 180.15988 * 17 16 15 36 36 H 1.07996 * 125.90222 * 179.75568 * 18 17 16 37 37 H 1.09003 * 113.61687 * 105.46026 * 20 10 9 38 38 H 1.09009 * 113.61565 * 334.56374 * 20 10 9 39 39 H 1.08004 * 120.75090 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6378 -0.0201 2.1939 6 7 3.0783 -0.6298 3.2787 7 6 2.8718 -1.9211 3.4816 8 7 3.3586 -2.5243 4.6372 9 6 4.1015 -1.7315 5.6201 10 6 4.5200 -2.6281 6.7870 11 1 4.9103 -3.5922 6.4613 12 6 5.4126 -1.9190 7.8192 13 6 4.6183 -2.6668 8.9031 14 1 4.3984 -2.0590 9.7808 15 7 5.1801 -3.9761 9.2442 16 6 4.9597 -5.1315 8.5825 17 6 5.6595 -6.1055 9.2089 18 6 6.3230 -5.5275 10.2962 19 7 6.0363 -4.2511 10.3183 20 6 3.4591 -2.7355 7.8950 21 6 2.1660 -2.6807 2.5507 22 9 1.9514 -3.9977 2.7624 23 6 1.6875 -2.0665 1.4060 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5139 -0.8901 26 1 3.5346 1.7703 0.0321 27 1 1.5614 2.4680 -1.2085 28 1 2.8293 1.0345 2.0607 29 1 3.2062 -3.4696 4.7920 30 1 3.4679 -0.9257 5.9905 31 1 4.9892 -1.3088 5.1496 32 1 5.2760 -0.8380 7.8454 33 1 6.4612 -2.2120 7.7661 34 1 4.3381 -5.2558 7.7082 35 1 5.6958 -7.1463 8.9227 36 1 6.9617 -6.0453 10.9964 37 1 2.9301 -3.6886 7.9022 38 1 2.7882 -1.8776 7.9419 39 1 1.1367 -2.6290 0.6666 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945880_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:00:37 Heat of formation + Delta-G solvation = 84.411339 kcal Electronic energy + Delta-G solvation = -24029.449615 eV Core-core repulsion = 20277.415738 eV Total energy + Delta-G solvation = -3752.033878 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.95487 -42.42500 -41.39644 -39.98163 -38.06716 -36.45697 -33.33848 -32.71255 -31.51752 -31.00849 -28.71046 -26.90269 -26.25819 -25.27823 -23.89954 -22.87180 -22.29655 -21.67184 -20.41986 -19.32147 -18.47677 -18.32596 -17.89324 -17.55668 -17.06893 -16.61102 -16.27586 -16.07506 -15.90662 -15.58065 -15.47439 -15.38164 -15.20285 -14.53457 -14.37201 -14.31114 -14.02528 -13.85135 -13.61405 -13.48701 -13.28511 -12.99717 -12.55363 -12.15605 -12.06497 -11.77792 -11.73354 -11.47579 -11.20245 -10.72611 -10.68989 -10.41339 -10.39079 -9.54586 -8.75483 -4.97061 -0.08302 0.10722 0.91522 1.32508 1.51457 1.67469 1.89978 1.97360 2.01321 2.54803 3.02207 3.18427 3.25726 3.35402 3.50561 3.58111 3.67883 3.71428 3.86417 3.88966 4.01432 4.03593 4.19104 4.37370 4.43368 4.46592 4.51590 4.65396 4.69964 4.72245 4.73065 4.78476 4.85661 4.90604 4.98972 4.99858 5.10540 5.20920 5.37503 5.71519 5.95774 6.14452 6.18076 6.73632 6.80318 6.95613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.059 4.059 3 Si 0.775 3.225 4 C -0.208 4.208 5 C 0.149 3.851 6 N -0.526 5.526 7 C 0.382 3.618 8 N -0.713 5.713 9 C 0.150 3.850 10 C -0.117 4.117 11 H 0.097 0.903 12 C -0.129 4.129 13 C 0.119 3.881 14 H 0.110 0.890 15 N -0.360 5.360 16 C 0.054 3.946 17 C -0.290 4.290 18 C 0.033 3.967 19 N -0.340 5.340 20 C -0.124 4.124 21 C -0.038 4.038 22 F -0.141 7.141 23 C -0.042 4.042 24 H 0.396 0.604 25 H 0.110 0.890 26 H -0.281 1.281 27 H -0.298 1.298 28 H 0.185 0.815 29 H 0.416 0.584 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.198 0.802 35 H 0.163 0.837 36 H 0.200 0.800 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.172 2.219 0.203 3.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.170 4.170 3 Si 0.681 3.319 4 C -0.213 4.213 5 C -0.007 4.007 6 N -0.244 5.244 7 C 0.143 3.857 8 N -0.346 5.346 9 C 0.027 3.973 10 C -0.136 4.136 11 H 0.115 0.885 12 C -0.168 4.168 13 C 0.017 3.983 14 H 0.128 0.872 15 N -0.142 5.142 16 C -0.093 4.093 17 C -0.319 4.319 18 C -0.152 4.152 19 N -0.161 5.161 20 C -0.162 4.162 21 C -0.064 4.064 22 F -0.120 7.120 23 C -0.069 4.069 24 H 0.246 0.754 25 H 0.127 0.873 26 H -0.208 1.208 27 H -0.226 1.226 28 H 0.201 0.799 29 H 0.254 0.746 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.215 0.785 35 H 0.181 0.819 36 H 0.216 0.784 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.917 4.273 0.622 4.414 hybrid contribution -0.357 -2.772 -1.145 3.020 sum -1.274 1.501 -0.523 2.037 Atomic orbital electron populations 1.86481 1.17222 1.82153 1.50552 1.24985 0.85233 1.10617 0.96119 0.93852 0.77949 0.74743 0.85369 1.20976 1.05616 0.94306 1.00416 1.22683 0.90881 1.00177 0.87002 1.67350 1.25602 1.07330 1.24069 1.18568 0.90622 0.89083 0.87395 1.44602 1.59154 1.12456 1.18423 1.21275 0.95631 0.93285 0.87104 1.22831 0.97233 0.99976 0.93533 0.88505 1.23358 0.98647 1.01682 0.93089 1.22304 0.96042 0.80936 0.99054 0.87236 1.48609 1.36605 1.07722 1.21273 1.22971 1.00994 0.85655 0.99644 1.21883 1.07211 1.01897 1.00887 1.24377 1.00178 0.91305 0.99387 1.77333 1.12383 1.18205 1.08198 1.23500 0.95320 1.05391 0.91985 1.18134 1.09722 0.79425 0.99139 1.91466 1.93816 1.31689 1.95005 1.21437 0.95445 0.94994 0.94990 0.75389 0.87289 1.20820 1.22632 0.79875 0.74606 0.90407 0.92020 0.85912 0.91977 0.78487 0.81907 0.78355 0.89676 0.85736 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.26 12.84 -148.98 -1.91 -0.65 16 2 C -0.06 0.19 2.82 71.24 0.20 0.39 16 3 Si 0.78 -3.89 29.83 68.60 2.05 -1.84 16 4 C -0.21 0.39 5.36 -19.77 -0.11 0.29 16 5 C 0.15 -0.33 9.83 84.61 0.83 0.50 16 6 N -0.53 -0.58 9.57 -193.02 -1.85 -2.43 16 7 C 0.38 0.47 7.49 133.08 1.00 1.47 16 8 N -0.71 2.08 5.71 -344.81 -1.97 0.11 16 9 C 0.15 -0.82 5.54 86.38 0.48 -0.34 16 10 C -0.12 0.86 3.32 -10.27 -0.03 0.83 16 11 H 0.10 -0.64 6.89 -2.39 -0.02 -0.66 16 12 C -0.13 0.66 7.44 31.12 0.23 0.89 16 13 C 0.12 -0.33 5.18 45.52 0.24 -0.09 16 14 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 15 N -0.36 -1.10 3.80 -324.99 -1.23 -2.33 16 16 C 0.05 0.01 9.62 83.54 0.80 0.81 16 17 C -0.29 -0.57 10.80 21.99 0.24 -0.33 16 18 C 0.03 0.16 12.03 85.24 1.03 1.19 16 19 N -0.34 -2.99 12.58 -57.02 -0.72 -3.71 16 20 C -0.12 1.01 6.88 31.12 0.21 1.22 16 21 C -0.04 -0.08 7.35 22.59 0.17 0.08 16 22 F -0.14 -0.50 16.65 44.97 0.75 0.25 16 23 C -0.04 -0.02 9.82 22.48 0.22 0.20 16 24 H 0.40 -4.10 8.70 -74.06 -0.64 -4.74 16 25 H 0.11 -0.24 7.96 -2.38 -0.02 -0.26 16 26 H -0.28 0.09 7.11 99.48 0.71 0.80 16 27 H -0.30 -0.89 7.11 99.48 0.71 -0.19 16 28 H 0.18 -1.40 4.91 -2.91 -0.01 -1.42 16 29 H 0.42 -2.09 7.94 -92.71 -0.74 -2.83 16 30 H 0.08 -0.45 7.85 -2.39 -0.02 -0.47 16 31 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.12 -1.03 8.10 -2.39 -0.02 -1.05 16 33 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.20 -1.35 6.63 -2.91 -0.02 -1.37 16 35 H 0.16 -0.35 8.06 -2.91 -0.02 -0.38 16 36 H 0.20 -0.09 8.06 -2.91 -0.02 -0.11 16 37 H 0.08 -0.71 7.04 -2.39 -0.02 -0.73 16 38 H 0.12 -1.31 7.90 -2.38 -0.02 -1.33 16 39 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 Total: 0.00 -19.28 331.19 0.38 -18.90 By element: Atomic # 1 Polarization: -15.18 SS G_CDS: -0.24 Total: -15.41 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.50 Total: 7.10 kcal Atomic # 7 Polarization: -2.59 SS G_CDS: -5.77 Total: -8.35 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: -1.91 Total: -0.65 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 0.75 Total: 0.25 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.05 Total: -1.84 kcal Total: -19.28 0.38 -18.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945880_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.315 kcal (2) G-P(sol) polarization free energy of solvation -19.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds