Wall clock time and date at job start Mon Mar 8 2021 07:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 110.00989 * 2 1 4 4 C 1.87570 * 110.03043 * 238.51128 * 2 1 3 5 5 C 1.53933 * 106.83674 * 284.57295 * 4 2 1 6 6 N 1.46443 * 109.45882 * 301.99553 * 5 4 2 7 7 C 1.38412 * 110.99768 * 204.96541 * 6 5 4 8 8 N 1.32491 * 119.21722 * 359.73251 * 7 6 5 9 9 C 1.32278 * 120.74256 * 179.71736 * 8 7 6 10 10 C 1.38607 * 119.19167 * 0.54326 * 9 8 7 11 11 C 1.50705 * 120.71805 * 179.75283 * 10 9 8 12 12 O 1.42894 * 109.46935 * 244.97771 * 11 10 9 13 13 Si 1.86300 * 109.47107 * 4.97871 * 11 10 9 14 14 H 1.48504 * 109.47277 * 59.99928 * 13 11 10 15 15 H 1.48502 * 109.46893 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47094 * 299.99967 * 13 11 10 17 17 C 1.38601 * 118.55879 * 359.73194 * 10 9 8 18 18 N 1.32275 * 119.19854 * 359.97438 * 17 10 9 19 19 C 1.46442 * 113.64069 * 79.02148 * 6 5 4 20 20 C 1.53926 * 109.45706 * 280.97331 * 19 6 5 21 21 H 1.09000 * 109.47438 * 298.61373 * 1 2 3 22 22 H 1.08993 * 109.47169 * 58.61939 * 1 2 3 23 23 H 1.09003 * 109.47242 * 178.61679 * 1 2 3 24 24 H 1.09005 * 109.46972 * 181.38537 * 3 2 1 25 25 H 1.09002 * 109.47159 * 301.38210 * 3 2 1 26 26 H 1.08996 * 109.47321 * 61.38477 * 3 2 1 27 27 H 1.09001 * 109.97999 * 165.24481 * 4 2 1 28 28 H 1.08999 * 109.98379 * 43.89994 * 4 2 1 29 29 H 1.09002 * 109.47481 * 181.99621 * 5 4 2 30 30 H 1.09001 * 109.47160 * 61.99411 * 5 4 2 31 31 H 1.07992 * 120.40495 * 180.25286 * 9 8 7 32 32 H 1.08997 * 109.46787 * 124.97514 * 11 10 9 33 33 H 0.96693 * 114.00259 * 60.00444 * 12 11 10 34 34 H 1.08003 * 120.39916 * 180.02562 * 17 10 9 35 35 H 1.09001 * 109.47449 * 40.97028 * 19 6 5 36 36 H 1.08997 * 109.47214 * 160.98031 * 19 6 5 37 37 H 1.08999 * 109.97895 * 177.33677 * 20 19 6 38 38 H 1.08998 * 109.98434 * 298.68232 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5054 -0.9205 -1.5027 5 6 2.3099 -2.4216 -1.2234 6 7 3.0227 -2.7866 0.0026 7 6 3.3509 -4.1312 0.0039 8 7 3.0019 -4.8831 -1.0297 9 6 3.3050 -6.1703 -1.0625 10 6 3.9857 -6.7319 0.0063 11 6 4.3435 -8.1959 0.0075 12 8 3.6385 -8.8576 1.0596 13 14 3.8708 -8.9519 -1.6283 14 1 4.6035 -8.2642 -2.7217 15 1 4.2240 -10.3944 -1.6274 16 1 2.4089 -8.7998 -1.8399 17 6 4.3306 -5.9179 1.0737 18 7 4.0024 -4.6369 1.0408 19 6 2.3098 -2.4193 1.2279 20 6 2.5055 -0.9177 1.5044 21 1 -0.3634 0.4921 0.9021 22 1 -0.3633 0.5351 -0.8773 23 1 -0.3634 -1.0274 -0.0248 24 1 3.5902 1.7404 -0.0248 25 1 2.1219 2.2751 -0.8773 26 1 2.1624 2.2604 0.9021 27 1 3.5637 -0.7035 -1.6481 28 1 1.9396 -0.6296 -2.3878 29 1 2.7033 -3.0009 -2.0587 30 1 1.2474 -2.6333 -1.1028 31 1 3.0213 -6.7771 -1.9095 32 1 5.4166 -8.3075 0.1627 33 1 2.6762 -8.7992 0.9857 34 1 4.8617 -6.3243 1.9218 35 1 1.2474 -2.6312 1.1076 36 1 2.7032 -2.9970 2.0643 37 1 1.9396 -0.6251 2.3889 38 1 3.5638 -0.7005 1.6493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16969770_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:56:20 Heat of formation + Delta-G solvation = 0.243496 kcal Electronic energy + Delta-G solvation = -18624.603959 eV Core-core repulsion = 15819.347114 eV Total energy + Delta-G solvation = -2805.256845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38665 -39.28188 -37.76815 -34.89186 -33.36672 -32.17554 -30.36889 -29.05842 -28.48974 -26.49453 -26.07969 -23.67537 -23.52450 -21.83124 -19.21447 -18.87508 -18.04881 -16.80230 -16.46488 -16.30396 -16.03102 -15.76865 -15.26028 -14.90344 -14.43734 -14.31604 -14.07781 -13.87754 -13.73862 -13.51397 -13.30841 -13.22896 -13.10099 -12.98914 -12.73911 -12.34283 -12.32464 -12.26602 -11.86374 -11.77255 -11.22593 -10.86488 -10.70707 -10.50082 -10.36228 -10.00437 -9.33952 -0.18457 0.06162 1.00605 1.30287 1.38400 1.67858 1.80222 1.82705 1.86320 2.05990 2.57432 2.65979 3.06488 3.32079 3.51539 3.57898 3.60985 4.07282 4.09778 4.16272 4.26986 4.38551 4.47241 4.55072 4.66449 4.67593 4.70112 4.72832 4.74615 4.76376 4.89678 4.98871 5.22051 5.34593 5.36701 5.48004 5.51629 5.70224 5.74038 6.16961 6.39871 7.10542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 0.990 3.010 3 C -0.443 4.443 4 C -0.404 4.404 5 C 0.074 3.926 6 N -0.468 5.468 7 C 0.503 3.497 8 N -0.549 5.549 9 C 0.174 3.826 10 C -0.269 4.269 11 C -0.063 4.063 12 O -0.537 6.537 13 Si 0.939 3.061 14 H -0.247 1.247 15 H -0.246 1.246 16 H -0.249 1.249 17 C 0.209 3.791 18 N -0.532 5.532 19 C 0.077 3.923 20 C -0.402 4.402 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.162 0.838 32 H 0.122 0.878 33 H 0.377 0.623 34 H 0.175 0.825 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 -0.296 -0.468 1.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.186 2.814 3 C -0.551 4.551 4 C -0.490 4.490 5 C -0.053 4.053 6 N -0.187 5.187 7 C 0.148 3.852 8 N -0.269 5.269 9 C 0.007 3.993 10 C -0.275 4.275 11 C -0.175 4.175 12 O -0.341 6.341 13 Si 0.761 3.239 14 H -0.171 1.171 15 H -0.169 1.169 16 H -0.172 1.172 17 C 0.041 3.959 18 N -0.250 5.250 19 C -0.048 4.048 20 C -0.488 4.488 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.179 0.821 32 H 0.140 0.860 33 H 0.224 0.776 34 H 0.192 0.808 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.030 0.562 -1.055 1.578 hybrid contribution -0.619 -0.909 0.134 1.108 sum -1.649 -0.347 -0.922 1.920 Atomic orbital electron populations 1.26112 1.20453 1.04296 1.04610 0.79705 0.67047 0.67216 0.67449 1.26015 1.06470 1.18191 1.04437 1.26360 1.07247 1.01042 1.14366 1.21842 0.96336 0.96694 0.90380 1.57218 1.46325 1.09199 1.05998 1.21042 0.89022 0.89550 0.85589 1.68375 1.23611 1.06351 1.28526 1.22960 0.89598 0.90698 0.96045 1.21892 1.07223 0.99770 0.98623 1.24717 1.01253 0.88784 1.02755 1.86536 1.22982 1.75996 1.48626 0.85817 0.81284 0.81419 0.75377 1.17054 1.16939 1.17249 1.23039 0.89961 0.86892 0.96016 1.68115 1.15176 1.14486 1.27183 1.21925 0.95502 0.97898 0.89439 1.26344 1.07567 1.00454 1.14430 0.91097 0.91063 0.91500 0.91050 0.91204 0.91185 0.89707 0.89666 0.88260 0.92828 0.82104 0.85981 0.77616 0.80766 0.93134 0.88725 0.89667 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.67 8.65 101.05 0.87 1.54 16 2 Si 0.99 -2.07 11.76 -169.99 -2.00 -4.07 16 3 C -0.44 0.55 8.65 101.05 0.87 1.42 16 4 C -0.40 0.28 5.24 37.64 0.20 0.48 16 5 C 0.07 0.07 4.86 -3.59 -0.02 0.05 16 6 N -0.47 -1.03 4.22 -174.97 -0.74 -1.77 16 7 C 0.50 1.72 7.22 -322.81 -2.33 -0.62 16 8 N -0.55 -1.61 8.28 -13.93 -0.12 -1.73 16 9 C 0.17 0.15 9.92 -17.22 -0.17 -0.02 16 10 C -0.27 0.04 5.36 -104.35 -0.56 -0.52 16 11 C -0.06 0.12 2.83 36.01 0.10 0.22 16 12 O -0.54 0.63 12.85 -35.23 -0.45 0.18 16 13 Si 0.94 -1.74 25.21 -169.99 -4.28 -6.02 16 14 H -0.25 0.26 7.11 56.52 0.40 0.67 16 15 H -0.25 0.08 7.11 56.52 0.40 0.49 16 16 H -0.25 0.44 7.06 56.52 0.40 0.84 16 17 C 0.21 0.19 10.99 -17.23 -0.19 0.00 16 18 N -0.53 -1.71 9.29 -13.93 -0.13 -1.84 16 19 C 0.08 0.06 5.26 -3.59 -0.02 0.05 16 20 C -0.40 0.31 5.24 37.64 0.20 0.50 16 21 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 22 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 23 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 24 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.08 0.00 7.99 -51.93 -0.42 -0.41 16 28 H 0.08 -0.14 7.99 -51.93 -0.42 -0.55 16 29 H 0.10 0.21 6.77 -51.93 -0.35 -0.14 16 30 H 0.05 0.01 7.58 -51.93 -0.39 -0.38 16 31 H 0.16 -0.20 5.03 -52.49 -0.26 -0.46 16 32 H 0.12 -0.35 7.96 -51.93 -0.41 -0.76 16 33 H 0.38 -1.56 8.70 45.56 0.40 -1.16 16 34 H 0.18 -0.22 8.06 -52.48 -0.42 -0.65 16 35 H 0.05 0.00 7.58 -51.93 -0.39 -0.40 16 36 H 0.09 0.18 7.00 -51.93 -0.36 -0.19 16 37 H 0.08 -0.15 7.99 -51.93 -0.42 -0.56 16 38 H 0.09 0.00 7.99 -51.93 -0.42 -0.41 16 LS Contribution 305.54 15.07 4.60 4.60 Total: 0.00 -5.35 305.54 -9.30 -14.65 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: -5.15 Total: -7.11 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.04 Total: 3.10 kcal Atomic # 7 Polarization: -4.36 SS G_CDS: -0.98 Total: -5.34 kcal Atomic # 8 Polarization: 0.63 SS G_CDS: -0.45 Total: 0.18 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: -6.28 Total: -10.09 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -5.35 -9.30 -14.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969770_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.895 kcal (2) G-P(sol) polarization free energy of solvation -5.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds