Wall clock time and date at job start Mon Mar 8 2021 07:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 110.00989 * 2 1 4 4 C 1.87570 * 110.03043 * 238.51128 * 2 1 3 5 5 C 1.53933 * 106.83674 * 284.57295 * 4 2 1 6 6 N 1.46443 * 109.45882 * 301.99553 * 5 4 2 7 7 C 1.38412 * 110.99768 * 204.96541 * 6 5 4 8 8 N 1.32491 * 119.21722 * 359.73251 * 7 6 5 9 9 C 1.32278 * 120.74256 * 179.71736 * 8 7 6 10 10 C 1.38607 * 119.19167 * 0.54326 * 9 8 7 11 11 C 1.50705 * 120.71805 * 179.75283 * 10 9 8 12 12 O 1.42894 * 109.46935 * 244.97771 * 11 10 9 13 13 Si 1.86300 * 109.47107 * 4.97871 * 11 10 9 14 14 H 1.48504 * 109.47277 * 59.99928 * 13 11 10 15 15 H 1.48502 * 109.46893 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47094 * 299.99967 * 13 11 10 17 17 C 1.38601 * 118.55879 * 359.73194 * 10 9 8 18 18 N 1.32275 * 119.19854 * 359.97438 * 17 10 9 19 19 C 1.46442 * 113.64069 * 79.02148 * 6 5 4 20 20 C 1.53926 * 109.45706 * 280.97331 * 19 6 5 21 21 H 1.09000 * 109.47438 * 298.61373 * 1 2 3 22 22 H 1.08993 * 109.47169 * 58.61939 * 1 2 3 23 23 H 1.09003 * 109.47242 * 178.61679 * 1 2 3 24 24 H 1.09005 * 109.46972 * 181.38537 * 3 2 1 25 25 H 1.09002 * 109.47159 * 301.38210 * 3 2 1 26 26 H 1.08996 * 109.47321 * 61.38477 * 3 2 1 27 27 H 1.09001 * 109.97999 * 165.24481 * 4 2 1 28 28 H 1.08999 * 109.98379 * 43.89994 * 4 2 1 29 29 H 1.09002 * 109.47481 * 181.99621 * 5 4 2 30 30 H 1.09001 * 109.47160 * 61.99411 * 5 4 2 31 31 H 1.07992 * 120.40495 * 180.25286 * 9 8 7 32 32 H 1.08997 * 109.46787 * 124.97514 * 11 10 9 33 33 H 0.96693 * 114.00259 * 60.00444 * 12 11 10 34 34 H 1.08003 * 120.39916 * 180.02562 * 17 10 9 35 35 H 1.09001 * 109.47449 * 40.97028 * 19 6 5 36 36 H 1.08997 * 109.47214 * 160.98031 * 19 6 5 37 37 H 1.08999 * 109.97895 * 177.33677 * 20 19 6 38 38 H 1.08998 * 109.98434 * 298.68232 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5054 -0.9205 -1.5027 5 6 2.3099 -2.4216 -1.2234 6 7 3.0227 -2.7866 0.0026 7 6 3.3509 -4.1312 0.0039 8 7 3.0019 -4.8831 -1.0297 9 6 3.3050 -6.1703 -1.0625 10 6 3.9857 -6.7319 0.0063 11 6 4.3435 -8.1959 0.0075 12 8 3.6385 -8.8576 1.0596 13 14 3.8708 -8.9519 -1.6283 14 1 4.6035 -8.2642 -2.7217 15 1 4.2240 -10.3944 -1.6274 16 1 2.4089 -8.7998 -1.8399 17 6 4.3306 -5.9179 1.0737 18 7 4.0024 -4.6369 1.0408 19 6 2.3098 -2.4193 1.2279 20 6 2.5055 -0.9177 1.5044 21 1 -0.3634 0.4921 0.9021 22 1 -0.3633 0.5351 -0.8773 23 1 -0.3634 -1.0274 -0.0248 24 1 3.5902 1.7404 -0.0248 25 1 2.1219 2.2751 -0.8773 26 1 2.1624 2.2604 0.9021 27 1 3.5637 -0.7035 -1.6481 28 1 1.9396 -0.6296 -2.3878 29 1 2.7033 -3.0009 -2.0587 30 1 1.2474 -2.6333 -1.1028 31 1 3.0213 -6.7771 -1.9095 32 1 5.4166 -8.3075 0.1627 33 1 2.6762 -8.7992 0.9857 34 1 4.8617 -6.3243 1.9218 35 1 1.2474 -2.6312 1.1076 36 1 2.7032 -2.9970 2.0643 37 1 1.9396 -0.6251 2.3889 38 1 3.5638 -0.7005 1.6493 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16969770_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:56:19 Heat of formation + Delta-G solvation = 6.754730 kcal Electronic energy + Delta-G solvation = -18624.321611 eV Core-core repulsion = 15819.347114 eV Total energy + Delta-G solvation = -2804.974497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.46709 -39.30809 -37.69900 -34.99617 -33.38106 -32.17235 -30.35255 -28.94937 -28.35349 -26.46579 -26.13251 -23.67722 -23.54315 -21.86672 -19.25319 -18.94068 -18.00767 -16.83662 -16.42626 -16.30249 -15.98441 -15.78600 -15.27464 -14.89334 -14.40750 -14.23452 -13.98131 -13.81719 -13.67491 -13.51661 -13.18944 -13.16933 -13.02959 -12.92897 -12.70246 -12.31537 -12.24983 -12.22426 -11.97064 -11.73591 -11.24853 -10.76799 -10.66204 -10.43745 -10.31750 -10.04494 -9.40452 -0.25966 -0.01140 1.13854 1.43761 1.50334 1.78844 1.91197 1.96222 1.99962 2.03949 2.57211 2.66533 3.02270 3.46599 3.50766 3.55055 3.64424 4.06824 4.09486 4.15316 4.24825 4.36961 4.55207 4.60636 4.69120 4.72333 4.81906 4.82367 4.85221 4.86314 4.93330 4.96599 5.18973 5.40941 5.42556 5.58012 5.62726 5.65186 5.70368 6.08560 6.66420 7.00312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.057 2.943 3 C -0.455 4.455 4 C -0.415 4.415 5 C 0.073 3.927 6 N -0.477 5.477 7 C 0.485 3.515 8 N -0.566 5.566 9 C 0.164 3.836 10 C -0.257 4.257 11 C -0.057 4.057 12 O -0.548 6.548 13 Si 0.971 3.029 14 H -0.258 1.258 15 H -0.266 1.266 16 H -0.248 1.248 17 C 0.201 3.799 18 N -0.553 5.553 19 C 0.076 3.924 20 C -0.413 4.413 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.179 0.821 32 H 0.135 0.865 33 H 0.389 0.611 34 H 0.194 0.806 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 -0.284 -0.388 2.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.249 2.751 3 C -0.562 4.562 4 C -0.500 4.500 5 C -0.053 4.053 6 N -0.196 5.196 7 C 0.130 3.870 8 N -0.286 5.286 9 C -0.003 4.003 10 C -0.263 4.263 11 C -0.169 4.169 12 O -0.355 6.355 13 Si 0.794 3.206 14 H -0.182 1.182 15 H -0.191 1.191 16 H -0.171 1.171 17 C 0.033 3.967 18 N -0.272 5.272 19 C -0.049 4.049 20 C -0.497 4.497 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.195 0.805 32 H 0.152 0.848 33 H 0.238 0.762 34 H 0.211 0.789 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.471 0.563 -0.972 1.851 hybrid contribution -0.461 -0.979 0.108 1.088 sum -1.931 -0.416 -0.865 2.156 Atomic orbital electron populations 1.26201 1.20802 1.04303 1.04945 0.78712 0.65944 0.65487 0.64987 1.26151 1.06300 1.19048 1.04715 1.26553 1.07028 1.00241 1.16139 1.21862 0.96407 0.97479 0.89571 1.57335 1.46715 1.08920 1.06665 1.21275 0.89675 0.90141 0.85950 1.68389 1.24291 1.07236 1.28652 1.23334 0.89636 0.90377 0.96944 1.22030 1.06035 1.00479 0.97761 1.24753 1.01994 0.87370 1.02746 1.86513 1.24244 1.75891 1.48821 0.85369 0.80923 0.79614 0.74655 1.18189 1.19080 1.17146 1.23432 0.89887 0.86431 0.96933 1.68126 1.15854 1.15669 1.27537 1.21965 0.95690 0.98665 0.88601 1.26530 1.07309 0.99667 1.16177 0.90752 0.90760 0.91665 0.91499 0.90938 0.90904 0.90604 0.88609 0.89794 0.92250 0.80464 0.84774 0.76193 0.78947 0.92345 0.90178 0.88522 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.72 8.65 113.37 0.98 2.70 16 2 Si 1.06 -4.64 11.76 68.60 0.81 -3.83 16 3 C -0.45 1.29 8.65 113.37 0.98 2.27 16 4 C -0.42 0.39 5.24 72.30 0.38 0.77 16 5 C 0.07 0.22 4.86 86.71 0.42 0.64 16 6 N -0.48 -2.71 4.22 -707.49 -2.98 -5.70 16 7 C 0.49 3.95 7.22 261.49 1.89 5.84 16 8 N -0.57 -3.93 8.28 -197.99 -1.64 -5.57 16 9 C 0.16 0.34 9.92 84.71 0.84 1.18 16 10 C -0.26 0.07 5.36 -19.69 -0.11 -0.03 16 11 C -0.06 0.24 2.83 71.24 0.20 0.44 16 12 O -0.55 1.69 12.85 -148.98 -1.91 -0.22 16 13 Si 0.97 -3.88 25.21 68.60 1.73 -2.15 16 14 H -0.26 0.57 7.11 99.48 0.71 1.28 16 15 H -0.27 0.14 7.11 99.48 0.71 0.85 16 16 H -0.25 1.05 7.06 99.48 0.70 1.75 16 17 C 0.20 0.44 10.99 84.71 0.93 1.37 16 18 N -0.55 -4.19 9.29 -197.99 -1.84 -6.03 16 19 C 0.08 0.20 5.26 86.70 0.46 0.66 16 20 C -0.41 0.47 5.24 72.29 0.38 0.85 16 21 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 22 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 23 H 0.06 -0.20 7.96 -2.39 -0.02 -0.22 16 24 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 25 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.08 0.07 7.99 -2.39 -0.02 0.05 16 28 H 0.10 -0.32 7.99 -2.39 -0.02 -0.34 16 29 H 0.08 0.49 6.77 -2.39 -0.02 0.47 16 30 H 0.06 0.07 7.58 -2.39 -0.02 0.05 16 31 H 0.18 -0.43 5.03 -2.91 -0.01 -0.45 16 32 H 0.13 -0.89 7.96 -2.39 -0.02 -0.91 16 33 H 0.39 -3.48 8.70 -74.06 -0.64 -4.12 16 34 H 0.19 -0.52 8.06 -2.91 -0.02 -0.54 16 35 H 0.06 0.03 7.58 -2.39 -0.02 0.01 16 36 H 0.08 0.43 7.00 -2.39 -0.02 0.41 16 37 H 0.10 -0.35 7.99 -2.39 -0.02 -0.37 16 38 H 0.08 0.07 7.99 -2.39 -0.02 0.05 16 Total: 0.00 -12.79 305.54 2.67 -10.12 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: 1.16 Total: -3.29 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 7.35 Total: 16.68 kcal Atomic # 7 Polarization: -10.84 SS G_CDS: -6.46 Total: -17.30 kcal Atomic # 8 Polarization: 1.69 SS G_CDS: -1.91 Total: -0.22 kcal Atomic # 14 Polarization: -8.52 SS G_CDS: 2.54 Total: -5.99 kcal Total: -12.79 2.67 -10.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969770_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.876 kcal (2) G-P(sol) polarization free energy of solvation -12.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds