Wall clock time and date at job start Mon Mar 8 2021 07:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86305 * 110.00991 * 2 1 4 4 C 1.87570 * 110.03270 * 121.38647 * 2 1 3 5 5 C 1.53934 * 106.83722 * 163.10655 * 4 2 1 6 6 N 1.46439 * 109.45588 * 301.99135 * 5 4 2 7 7 C 1.38608 * 110.99717 * 204.97020 * 6 5 4 8 8 N 1.29691 * 124.95290 * 0.27888 * 7 6 5 9 9 C 1.32117 * 116.87032 * 180.20837 * 8 7 6 10 10 C 1.33327 * 114.57651 * 359.52631 * 9 8 7 11 11 C 1.50705 * 125.95120 * 180.22647 * 10 9 8 12 12 O 1.42904 * 109.47012 * 245.02597 * 11 10 9 13 13 Si 1.86300 * 109.46952 * 5.02523 * 11 10 9 14 14 H 1.48503 * 109.47252 * 60.00350 * 13 11 10 15 15 H 1.48506 * 109.47054 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47389 * 300.00194 * 13 11 10 17 17 S 1.70968 * 124.95130 * 179.97438 * 7 6 5 18 18 C 1.46440 * 113.64222 * 79.02191 * 6 5 4 19 19 C 1.53924 * 109.45832 * 280.97815 * 18 6 5 20 20 H 1.08994 * 109.47114 * 298.61103 * 1 2 3 21 21 H 1.08997 * 109.47094 * 58.61865 * 1 2 3 22 22 H 1.09002 * 109.46642 * 178.61300 * 1 2 3 23 23 H 1.09001 * 109.47170 * 181.38115 * 3 2 1 24 24 H 1.08988 * 109.47336 * 301.38960 * 3 2 1 25 25 H 1.09004 * 109.46822 * 61.38969 * 3 2 1 26 26 H 1.08997 * 109.98045 * 43.77270 * 4 2 1 27 27 H 1.09004 * 110.05676 * 282.47698 * 4 2 1 28 28 H 1.08999 * 109.46737 * 181.99608 * 5 4 2 29 29 H 1.09002 * 109.47519 * 61.99300 * 5 4 2 30 30 H 1.08002 * 122.71469 * 179.80156 * 9 8 7 31 31 H 1.08997 * 109.47179 * 125.02409 * 11 10 9 32 32 H 0.96702 * 113.99754 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.46844 * 40.97720 * 18 6 5 34 34 H 1.09003 * 109.47254 * 160.98010 * 18 6 5 35 35 H 1.08997 * 109.97765 * 298.67548 * 19 18 6 36 36 H 1.09006 * 110.05202 * 177.38035 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7506 0.0000 4 6 2.5055 -0.9178 1.5044 5 6 3.9827 -1.2499 1.2267 6 7 4.0817 -2.0463 0.0018 7 6 5.2334 -2.8175 0.0024 8 7 6.1103 -2.8425 0.9577 9 6 7.1540 -3.6350 0.7896 10 6 7.1534 -4.3172 -0.3559 11 6 8.2106 -5.2927 -0.8052 12 8 8.8638 -4.7841 -1.9700 13 14 9.4607 -5.5245 0.5565 14 1 8.7819 -6.0531 1.7669 15 1 10.5021 -6.4862 0.1140 16 1 10.0942 -4.2196 0.8744 17 16 5.7015 -3.8799 -1.2526 18 6 3.9826 -1.2521 -1.2246 19 6 2.5055 -0.9204 -1.5027 20 1 -0.3633 0.4921 0.9021 21 1 -0.3633 0.5351 -0.8773 22 1 -0.3633 -1.0274 -0.0249 23 1 3.5902 1.7404 -0.0248 24 1 2.1219 2.2751 -0.8772 25 1 2.1624 2.2603 0.9022 26 1 1.9382 -1.8369 1.6503 27 1 2.4257 -0.2867 2.3895 28 1 4.3909 -1.8174 2.0631 29 1 4.5466 -0.3250 1.1055 30 1 7.9416 -3.7263 1.5229 31 1 7.7456 -6.2506 -1.0385 32 1 9.5585 -5.3616 -2.3152 33 1 4.5465 -0.3270 -1.1049 34 1 4.3909 -1.8210 -2.0599 35 1 1.9382 -1.8399 -1.6470 36 1 2.4243 -0.2901 -2.3884 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16969770_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:56:33 Heat of formation + Delta-G solvation = -13.440375 kcal Electronic energy + Delta-G solvation = -17060.841278 eV Core-core repulsion = 14409.569213 eV Total energy + Delta-G solvation = -2651.272065 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 272.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13009 -38.95114 -37.66187 -32.55805 -32.25236 -30.36786 -29.08619 -28.50411 -26.37599 -24.86477 -23.92971 -22.38521 -20.41482 -19.23812 -18.60510 -17.52855 -16.41466 -16.13229 -16.06483 -15.86307 -15.18567 -14.87780 -14.62248 -14.31010 -14.08655 -13.90915 -13.73691 -13.56037 -13.32225 -13.19230 -13.06073 -12.89754 -12.70792 -12.39757 -12.32289 -12.18401 -12.00933 -11.11840 -10.82014 -10.67422 -10.60256 -10.42757 -10.26559 -10.05807 -9.01313 -0.23219 0.14215 0.71808 1.27915 1.37963 1.46069 1.64182 1.78206 1.80413 1.83915 1.87866 2.45718 2.59287 3.27837 3.51680 3.88126 3.99639 4.08479 4.16932 4.23989 4.37388 4.46856 4.57966 4.64780 4.66886 4.68400 4.72265 4.72437 4.84116 4.86358 5.14147 5.25869 5.35858 5.46226 5.50296 5.65076 5.83521 6.47835 6.80642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.443 4.443 2 Si 0.992 3.008 3 C -0.448 4.448 4 C -0.404 4.404 5 C 0.075 3.925 6 N -0.458 5.458 7 C 0.228 3.772 8 N -0.518 5.518 9 C 0.069 3.931 10 C -0.242 4.242 11 C -0.042 4.042 12 O -0.546 6.546 13 Si 0.954 3.046 14 H -0.246 1.246 15 H -0.249 1.249 16 H -0.244 1.244 17 S 0.173 5.827 18 C 0.067 3.933 19 C -0.404 4.404 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.171 0.829 31 H 0.079 0.921 32 H 0.383 0.617 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -0.528 -1.406 1.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.551 4.551 2 Si 1.189 2.811 3 C -0.556 4.556 4 C -0.490 4.490 5 C -0.053 4.053 6 N -0.179 5.179 7 C -0.140 4.140 8 N -0.239 5.239 9 C -0.084 4.084 10 C -0.365 4.365 11 C -0.154 4.154 12 O -0.352 6.352 13 Si 0.773 3.227 14 H -0.169 1.169 15 H -0.173 1.173 16 H -0.167 1.167 17 S 0.427 5.573 18 C -0.059 4.059 19 C -0.489 4.489 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.188 0.812 31 H 0.097 0.903 32 H 0.231 0.769 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.169 -0.338 -1.172 1.689 hybrid contribution 1.243 -0.109 0.253 1.274 sum 0.075 -0.447 -0.919 1.024 Atomic orbital electron populations 1.26014 1.19994 1.04632 1.04487 0.79661 0.67500 0.66774 0.67209 1.26118 1.06210 1.18575 1.04656 1.26372 0.99559 1.08704 1.14357 1.21841 0.97005 0.96088 0.90369 1.57892 1.27713 1.26551 1.05757 1.25115 0.93281 1.00636 0.94999 1.66810 1.02880 1.24389 1.29825 1.21388 0.96678 0.93532 0.96761 1.25045 1.01554 1.09594 1.00265 1.24061 0.98047 0.95916 0.97371 1.86526 1.54744 1.49883 1.44056 0.85657 0.77992 0.81653 0.77352 1.16883 1.17282 1.16699 1.83962 1.15639 1.37134 1.20612 1.22141 0.98534 0.96340 0.88873 1.26344 0.98687 1.09085 1.14813 0.91140 0.91186 0.91033 0.91438 0.91077 0.91017 0.89646 0.89672 0.88509 0.92798 0.81175 0.90337 0.76905 0.92246 0.90082 0.89292 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.71 8.65 101.05 0.87 1.58 16 2 Si 0.99 -2.42 11.76 -169.99 -2.00 -4.42 16 3 C -0.45 0.72 8.65 101.05 0.87 1.59 16 4 C -0.40 0.32 5.24 37.64 0.20 0.52 16 5 C 0.07 0.09 5.01 -3.59 -0.02 0.07 16 6 N -0.46 -0.78 4.22 -174.96 -0.74 -1.52 16 7 C 0.23 0.75 6.77 -87.68 -0.59 0.15 16 8 N -0.52 -2.26 9.03 -15.21 -0.14 -2.39 16 9 C 0.07 0.22 10.07 -19.14 -0.19 0.02 16 10 C -0.24 -0.58 5.95 -36.02 -0.21 -0.80 16 11 C -0.04 0.00 3.07 36.01 0.11 0.11 16 12 O -0.55 -0.11 12.86 -35.23 -0.45 -0.56 16 13 Si 0.95 -0.78 25.78 -169.99 -4.38 -5.16 16 14 H -0.25 0.02 7.11 56.52 0.40 0.42 16 15 H -0.25 0.27 7.11 56.52 0.40 0.67 16 16 H -0.24 -0.14 7.11 56.52 0.40 0.26 16 17 S 0.17 0.39 21.85 -107.50 -2.35 -1.96 16 18 C 0.07 0.00 5.27 -3.59 -0.02 -0.02 16 19 C -0.40 0.65 5.24 37.64 0.20 0.84 16 20 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 21 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 22 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 23 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 24 H 0.07 -0.12 7.96 -51.94 -0.41 -0.53 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.08 -0.02 7.99 -51.93 -0.42 -0.44 16 27 H 0.08 -0.13 8.00 -51.93 -0.42 -0.54 16 28 H 0.10 0.27 7.04 -51.93 -0.37 -0.10 16 29 H 0.05 0.04 7.58 -51.93 -0.39 -0.36 16 30 H 0.17 0.22 5.87 -52.49 -0.31 -0.09 16 31 H 0.08 -0.14 7.96 -51.93 -0.41 -0.56 16 32 H 0.38 -1.71 8.74 45.56 0.40 -1.31 16 33 H 0.06 -0.03 7.58 -51.93 -0.39 -0.43 16 34 H 0.08 0.00 6.67 -51.93 -0.35 -0.34 16 35 H 0.09 -0.11 7.99 -51.93 -0.42 -0.53 16 36 H 0.09 -0.23 7.99 -51.93 -0.42 -0.64 16 LS Contribution 301.94 15.07 4.55 4.55 Total: 0.00 -5.43 301.94 -9.05 -14.48 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: -4.76 Total: -7.10 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 1.22 Total: 4.08 kcal Atomic # 7 Polarization: -3.04 SS G_CDS: -0.88 Total: -3.92 kcal Atomic # 8 Polarization: -0.11 SS G_CDS: -0.45 Total: -0.56 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: -6.38 Total: -9.58 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.35 Total: -1.96 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -5.43 -9.05 -14.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969770_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.044 kcal (2) G-P(sol) polarization free energy of solvation -5.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds