Wall clock time and date at job start Mon Mar 8 2021 07:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86305 * 110.00991 * 2 1 4 4 C 1.87570 * 110.03270 * 121.38647 * 2 1 3 5 5 C 1.53934 * 106.83722 * 163.10655 * 4 2 1 6 6 N 1.46439 * 109.45588 * 301.99135 * 5 4 2 7 7 C 1.38608 * 110.99717 * 204.97020 * 6 5 4 8 8 N 1.29691 * 124.95290 * 0.27888 * 7 6 5 9 9 C 1.32117 * 116.87032 * 180.20837 * 8 7 6 10 10 C 1.33327 * 114.57651 * 359.52631 * 9 8 7 11 11 C 1.50705 * 125.95120 * 180.22647 * 10 9 8 12 12 O 1.42904 * 109.47012 * 245.02597 * 11 10 9 13 13 Si 1.86300 * 109.46952 * 5.02523 * 11 10 9 14 14 H 1.48503 * 109.47252 * 60.00350 * 13 11 10 15 15 H 1.48506 * 109.47054 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47389 * 300.00194 * 13 11 10 17 17 S 1.70968 * 124.95130 * 179.97438 * 7 6 5 18 18 C 1.46440 * 113.64222 * 79.02191 * 6 5 4 19 19 C 1.53924 * 109.45832 * 280.97815 * 18 6 5 20 20 H 1.08994 * 109.47114 * 298.61103 * 1 2 3 21 21 H 1.08997 * 109.47094 * 58.61865 * 1 2 3 22 22 H 1.09002 * 109.46642 * 178.61300 * 1 2 3 23 23 H 1.09001 * 109.47170 * 181.38115 * 3 2 1 24 24 H 1.08988 * 109.47336 * 301.38960 * 3 2 1 25 25 H 1.09004 * 109.46822 * 61.38969 * 3 2 1 26 26 H 1.08997 * 109.98045 * 43.77270 * 4 2 1 27 27 H 1.09004 * 110.05676 * 282.47698 * 4 2 1 28 28 H 1.08999 * 109.46737 * 181.99608 * 5 4 2 29 29 H 1.09002 * 109.47519 * 61.99300 * 5 4 2 30 30 H 1.08002 * 122.71469 * 179.80156 * 9 8 7 31 31 H 1.08997 * 109.47179 * 125.02409 * 11 10 9 32 32 H 0.96702 * 113.99754 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.46844 * 40.97720 * 18 6 5 34 34 H 1.09003 * 109.47254 * 160.98010 * 18 6 5 35 35 H 1.08997 * 109.97765 * 298.67548 * 19 18 6 36 36 H 1.09006 * 110.05202 * 177.38035 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7506 0.0000 4 6 2.5055 -0.9178 1.5044 5 6 3.9827 -1.2499 1.2267 6 7 4.0817 -2.0463 0.0018 7 6 5.2334 -2.8175 0.0024 8 7 6.1103 -2.8425 0.9577 9 6 7.1540 -3.6350 0.7896 10 6 7.1534 -4.3172 -0.3559 11 6 8.2106 -5.2927 -0.8052 12 8 8.8638 -4.7841 -1.9700 13 14 9.4607 -5.5245 0.5565 14 1 8.7819 -6.0531 1.7669 15 1 10.5021 -6.4862 0.1140 16 1 10.0942 -4.2196 0.8744 17 16 5.7015 -3.8799 -1.2526 18 6 3.9826 -1.2521 -1.2246 19 6 2.5055 -0.9204 -1.5027 20 1 -0.3633 0.4921 0.9021 21 1 -0.3633 0.5351 -0.8773 22 1 -0.3633 -1.0274 -0.0249 23 1 3.5902 1.7404 -0.0248 24 1 2.1219 2.2751 -0.8772 25 1 2.1624 2.2603 0.9022 26 1 1.9382 -1.8369 1.6503 27 1 2.4257 -0.2867 2.3895 28 1 4.3909 -1.8174 2.0631 29 1 4.5466 -0.3250 1.1055 30 1 7.9416 -3.7263 1.5229 31 1 7.7456 -6.2506 -1.0385 32 1 9.5585 -5.3616 -2.3152 33 1 4.5465 -0.3270 -1.1049 34 1 4.3909 -1.8210 -2.0599 35 1 1.9382 -1.8399 -1.6470 36 1 2.4243 -0.2901 -2.3884 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16969770_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:56:33 Heat of formation + Delta-G solvation = -8.107208 kcal Electronic energy + Delta-G solvation = -17060.610015 eV Core-core repulsion = 14409.569213 eV Total energy + Delta-G solvation = -2651.040802 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 272.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28167 -39.02079 -37.65428 -32.60691 -32.26305 -30.37848 -28.96272 -28.35155 -26.44907 -24.95384 -23.92708 -22.42577 -20.53475 -19.37019 -18.56986 -17.62374 -16.49585 -16.16222 -16.13902 -15.88180 -15.26715 -14.92246 -14.60967 -14.23909 -13.95980 -13.87510 -13.62917 -13.54999 -13.17949 -13.10611 -13.01189 -12.85764 -12.70665 -12.45329 -12.31475 -12.13454 -12.01416 -11.16546 -10.83509 -10.73161 -10.54762 -10.41203 -10.24379 -10.16381 -9.14458 -0.39755 0.00646 0.58013 1.28353 1.44821 1.50779 1.61377 1.78471 1.91890 1.96636 2.01051 2.40993 2.66674 3.31664 3.44724 3.87435 3.96474 4.11066 4.17372 4.21851 4.35284 4.48348 4.53534 4.64885 4.76651 4.81851 4.82479 4.86673 4.87264 4.92247 5.05122 5.39285 5.42126 5.57704 5.61336 5.65456 5.72153 6.62757 6.76986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.059 2.941 3 C -0.459 4.459 4 C -0.416 4.416 5 C 0.074 3.926 6 N -0.461 5.461 7 C 0.215 3.785 8 N -0.543 5.543 9 C 0.050 3.950 10 C -0.248 4.248 11 C -0.046 4.046 12 O -0.563 6.563 13 Si 0.991 3.009 14 H -0.259 1.259 15 H -0.239 1.239 16 H -0.268 1.268 17 S 0.182 5.818 18 C 0.060 3.940 19 C -0.410 4.410 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.180 0.820 31 H 0.099 0.901 32 H 0.403 0.597 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -0.599 -2.207 2.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.251 2.749 3 C -0.566 4.566 4 C -0.500 4.500 5 C -0.054 4.054 6 N -0.182 5.182 7 C -0.153 4.153 8 N -0.265 5.265 9 C -0.101 4.101 10 C -0.370 4.370 11 C -0.157 4.157 12 O -0.373 6.373 13 Si 0.812 3.188 14 H -0.183 1.183 15 H -0.162 1.162 16 H -0.193 1.193 17 S 0.435 5.565 18 C -0.065 4.065 19 C -0.495 4.495 20 H 0.089 0.911 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.197 0.803 31 H 0.117 0.883 32 H 0.254 0.746 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.371 -0.434 -1.981 2.448 hybrid contribution 1.324 -0.089 0.506 1.421 sum -0.046 -0.523 -1.475 1.566 Atomic orbital electron populations 1.26139 1.20744 1.04577 1.04694 0.78669 0.66102 0.65182 0.64946 1.26248 1.06064 1.19374 1.04898 1.26599 0.98182 1.08971 1.16277 1.21841 0.98261 0.95683 0.89643 1.58024 1.26911 1.26791 1.06465 1.25394 0.93569 1.01177 0.95152 1.66811 1.03616 1.25330 1.30728 1.21619 0.96923 0.93996 0.97604 1.25436 1.02059 1.09535 0.99990 1.24203 0.97848 0.95863 0.97790 1.86471 1.55675 1.51091 1.44067 0.85137 0.77259 0.80246 0.76196 1.18252 1.16204 1.19272 1.83820 1.15636 1.36795 1.20226 1.22287 0.99867 0.96303 0.88083 1.26476 0.97407 1.09478 1.16158 0.91131 0.90796 0.91247 0.91815 0.90631 0.91001 0.90288 0.89009 0.90670 0.92552 0.80306 0.88346 0.74608 0.91714 0.90241 0.89430 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.75 8.65 113.37 0.98 2.73 16 2 Si 1.06 -5.59 11.76 68.60 0.81 -4.78 16 3 C -0.46 1.73 8.65 113.37 0.98 2.71 16 4 C -0.42 0.40 5.24 72.30 0.38 0.78 16 5 C 0.07 0.27 5.01 86.71 0.43 0.70 16 6 N -0.46 -2.05 4.22 -707.46 -2.99 -5.04 16 7 C 0.22 1.70 6.77 179.32 1.21 2.91 16 8 N -0.54 -5.68 9.03 -202.02 -1.83 -7.51 16 9 C 0.05 0.39 10.07 83.54 0.84 1.23 16 10 C -0.25 -1.35 5.95 24.58 0.15 -1.21 16 11 C -0.05 0.02 3.07 71.24 0.22 0.24 16 12 O -0.56 0.06 12.86 -148.98 -1.92 -1.85 16 13 Si 0.99 -1.66 25.78 68.60 1.77 0.11 16 14 H -0.26 -0.06 7.11 99.48 0.71 0.64 16 15 H -0.24 0.81 7.11 99.48 0.71 1.52 16 16 H -0.27 -0.57 7.11 99.48 0.71 0.13 16 17 S 0.18 0.95 21.85 -56.49 -1.23 -0.29 16 18 C 0.06 0.02 5.27 86.70 0.46 0.48 16 19 C -0.41 1.52 5.24 72.29 0.38 1.89 16 20 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 21 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 22 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 23 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 24 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 25 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 26 H 0.08 0.03 7.99 -2.39 -0.02 0.01 16 27 H 0.09 -0.24 8.00 -2.39 -0.02 -0.25 16 28 H 0.07 0.59 7.04 -2.39 -0.02 0.57 16 29 H 0.06 0.15 7.58 -2.39 -0.02 0.13 16 30 H 0.18 0.75 5.87 -2.91 -0.02 0.73 16 31 H 0.10 -0.45 7.96 -2.39 -0.02 -0.47 16 32 H 0.40 -3.98 8.74 -74.06 -0.65 -4.63 16 33 H 0.06 -0.06 7.58 -2.39 -0.02 -0.07 16 34 H 0.08 0.04 6.67 -2.39 -0.02 0.03 16 35 H 0.09 -0.26 7.99 -2.39 -0.02 -0.28 16 36 H 0.10 -0.67 7.99 -2.38 -0.02 -0.68 16 Total: 0.00 -13.01 301.94 1.82 -11.19 By element: Atomic # 1 Polarization: -5.47 SS G_CDS: 1.18 Total: -4.29 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 6.03 Total: 12.47 kcal Atomic # 7 Polarization: -7.74 SS G_CDS: -4.81 Total: -12.55 kcal Atomic # 8 Polarization: 0.06 SS G_CDS: -1.92 Total: -1.85 kcal Atomic # 14 Polarization: -7.25 SS G_CDS: 2.58 Total: -4.67 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -1.23 Total: -0.29 kcal Total: -13.01 1.82 -11.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969770_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.078 kcal (2) G-P(sol) polarization free energy of solvation -13.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds