Wall clock time and date at job start Mon Mar 8 2021 07:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50701 * 122.70899 * 0.02562 * 3 2 1 5 5 O 1.42894 * 109.47204 * 30.00205 * 4 3 2 6 6 Si 1.86303 * 109.46999 * 150.00033 * 4 3 2 7 7 H 1.48506 * 109.47173 * 59.99382 * 6 4 3 8 8 H 1.48493 * 109.47396 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46893 * 300.00131 * 6 4 3 10 10 N 1.32119 * 114.57789 * 179.82832 * 3 2 1 11 11 C 1.29691 * 116.86662 * 0.47839 * 10 3 2 12 12 N 1.38603 * 124.95113 * 179.73721 * 11 10 3 13 13 C 1.46447 * 111.00131 * 307.38320 * 12 11 10 14 14 C 1.53925 * 109.45826 * 155.02862 * 13 12 11 15 15 Si 1.87575 * 106.83974 * 58.00891 * 14 13 12 16 16 C 1.86298 * 110.03061 * 196.89341 * 15 14 13 17 17 C 1.86301 * 110.11562 * 75.46269 * 15 14 13 18 18 C 1.87570 * 106.56276 * 316.15763 * 15 14 13 19 19 C 1.46447 * 111.00403 * 179.97438 * 12 11 10 20 20 S 1.70975 * 110.09880 * 359.73947 * 11 10 3 21 21 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 24 24 H 1.08997 * 109.46922 * 269.99694 * 4 3 2 25 25 H 0.96703 * 114.00558 * 59.99653 * 5 4 3 26 26 H 1.08997 * 109.46686 * 275.02309 * 13 12 11 27 27 H 1.08995 * 109.47415 * 35.03349 * 13 12 11 28 28 H 1.09000 * 109.98215 * 298.67649 * 14 13 12 29 29 H 1.09000 * 110.05185 * 177.37840 * 14 13 12 30 30 H 1.09000 * 109.47062 * 177.12231 * 16 15 14 31 31 H 1.08990 * 109.47074 * 297.12321 * 16 15 14 32 32 H 1.09002 * 109.47263 * 57.12661 * 16 15 14 33 33 H 1.08999 * 109.47424 * 302.82805 * 17 15 14 34 34 H 1.09007 * 109.46570 * 62.83102 * 17 15 14 35 35 H 1.09004 * 109.46918 * 182.82538 * 17 15 14 36 36 H 1.08996 * 109.98058 * 284.50629 * 18 15 14 37 37 H 1.08997 * 110.05638 * 163.21427 * 18 15 14 38 38 H 1.09001 * 109.46591 * 324.97083 * 19 12 11 39 39 H 1.08996 * 109.47040 * 84.97053 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4816 2.5019 0.6747 6 14 2.9326 3.6148 0.8787 7 1 4.2419 3.5950 0.1782 8 1 2.3925 4.9980 0.8787 9 1 3.1132 3.1532 2.2786 10 7 3.5850 0.8188 0.0036 11 6 3.9315 -0.4309 -0.0030 12 7 5.2384 -0.8926 -0.0059 13 6 6.0094 -0.2790 -1.0893 14 6 7.5045 -0.2881 -0.7236 15 14 7.9814 -2.0784 -0.4305 16 6 9.5944 -2.1653 0.4976 17 6 8.1321 -2.9757 -2.0562 18 6 6.6073 -2.8364 0.5968 19 6 5.2780 -2.3565 -0.0129 20 16 2.5412 -1.4261 -0.0078 21 1 -0.3633 -1.0277 -0.0051 22 1 -0.3633 0.5183 -0.8874 23 1 -0.3633 0.5094 0.8926 24 1 1.6088 2.8217 -1.0269 25 1 0.5241 2.2118 1.5962 26 1 5.8568 -0.8440 -2.0088 27 1 5.6772 0.7488 -1.2349 28 1 7.6698 0.2945 0.1827 29 1 8.0924 0.1244 -1.5436 30 1 9.8370 -3.2070 0.7077 31 1 10.3858 -1.7227 -0.1071 32 1 9.5040 -1.6172 1.4355 33 1 7.1920 -2.8984 -2.6024 34 1 8.9326 -2.5281 -2.6453 35 1 8.3600 -4.0256 -1.8719 36 1 6.6860 -2.4998 1.6305 37 1 6.6653 -3.9240 0.5543 38 1 4.4469 -2.7451 0.5756 39 1 5.1973 -2.7172 -1.0383 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16969770_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:56:39 Heat of formation + Delta-G solvation = -20.502661 kcal Electronic energy + Delta-G solvation = -19133.457595 eV Core-core repulsion = 16326.341667 eV Total energy + Delta-G solvation = -2807.115928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31262 -39.42716 -37.39945 -33.21415 -32.42357 -30.98060 -29.36109 -28.70322 -28.55319 -25.69049 -24.55223 -24.07842 -22.09192 -20.22027 -19.20385 -17.99902 -17.44129 -16.79607 -16.12513 -16.05881 -15.83486 -15.10195 -14.70950 -14.46561 -14.28149 -14.17549 -14.07181 -13.81721 -13.68589 -13.55360 -13.52126 -13.36997 -13.19088 -13.10034 -12.84701 -12.70197 -12.44343 -12.26281 -12.00192 -11.74342 -11.10155 -10.84281 -10.71710 -10.61028 -10.40128 -10.26519 -9.97225 -8.88269 -0.19067 0.23025 0.71322 1.23924 1.58198 1.66523 1.73194 1.75808 1.77644 1.80973 2.15297 2.23424 2.48703 3.32894 3.47482 3.81695 3.96129 4.07597 4.11446 4.21283 4.28843 4.38136 4.52896 4.57741 4.61332 4.61711 4.67966 4.68999 4.73358 4.75725 4.77827 4.92128 5.05176 5.20636 5.24980 5.30805 5.40958 5.46121 5.55535 5.74399 6.43236 6.85495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.216 4.216 3 C 0.043 3.957 4 C -0.045 4.045 5 O -0.534 6.534 6 Si 0.978 3.022 7 H -0.244 1.244 8 H -0.261 1.261 9 H -0.259 1.259 10 N -0.499 5.499 11 C 0.243 3.757 12 N -0.453 5.453 13 C 0.074 3.926 14 C -0.403 4.403 15 Si 0.993 3.007 16 C -0.443 4.443 17 C -0.448 4.448 18 C -0.401 4.401 19 C 0.060 3.940 20 S 0.092 5.908 21 H 0.059 0.941 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.124 0.876 25 H 0.376 0.624 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 -2.858 -0.753 3.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.337 4.337 3 C -0.088 4.088 4 C -0.158 4.158 5 O -0.339 6.339 6 Si 0.800 3.200 7 H -0.167 1.167 8 H -0.185 1.185 9 H -0.183 1.183 10 N -0.220 5.220 11 C -0.127 4.127 12 N -0.174 5.174 13 C -0.052 4.052 14 C -0.489 4.489 15 Si 1.189 2.811 16 C -0.551 4.551 17 C -0.555 4.555 18 C -0.486 4.486 19 C -0.067 4.067 20 S 0.344 5.656 21 H 0.078 0.922 22 H 0.099 0.901 23 H 0.102 0.898 24 H 0.142 0.858 25 H 0.224 0.776 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.783 -2.678 -0.511 3.258 hybrid contribution -0.652 -0.041 -0.227 0.692 sum 1.131 -2.719 -0.738 3.036 Atomic orbital electron populations 1.20234 0.86148 1.01915 1.04044 1.25425 1.01669 0.93399 1.13250 1.20320 0.86954 0.97547 1.03984 1.24462 0.92553 0.95055 1.03699 1.86530 1.28890 1.89539 1.28900 0.85197 0.78124 0.76954 0.79770 1.16711 1.18515 1.18286 1.65984 1.16955 1.17398 1.21676 1.24977 0.93907 0.91861 1.01975 1.57170 1.05305 1.09219 1.45669 1.22002 0.93327 1.00799 0.89069 1.26362 0.97150 1.19712 1.05708 0.79659 0.67096 0.67106 0.67227 1.26009 1.16055 1.04583 1.08493 1.26118 1.04543 1.08327 1.16555 1.26316 1.06950 1.06177 1.09180 1.22082 1.00361 0.82839 1.01434 1.84179 0.98329 1.11533 1.71529 0.92178 0.90122 0.89750 0.85807 0.77594 0.92904 0.88711 0.89347 0.89558 0.91143 0.91105 0.91000 0.91459 0.90966 0.91001 0.89244 0.89310 0.89869 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.02 8.90 36.01 0.32 0.34 16 2 C -0.22 -0.36 6.50 -36.02 -0.23 -0.60 16 3 C 0.04 0.11 5.92 -84.18 -0.50 -0.39 16 4 C -0.04 -0.04 2.94 36.01 0.11 0.06 16 5 O -0.53 -0.08 10.18 -35.23 -0.36 -0.44 16 6 Si 0.98 1.81 27.36 -169.99 -4.65 -2.84 16 7 H -0.24 -0.85 7.11 56.52 0.40 -0.45 16 8 H -0.26 -0.61 7.11 56.52 0.40 -0.20 16 9 H -0.26 -0.78 7.11 56.52 0.40 -0.38 16 10 N -0.50 -1.93 8.18 -11.36 -0.09 -2.02 16 11 C 0.24 0.66 6.83 -87.68 -0.60 0.06 16 12 N -0.45 -0.57 4.22 -174.96 -0.74 -1.31 16 13 C 0.07 0.03 5.30 -3.59 -0.02 0.01 16 14 C -0.40 0.48 5.24 37.64 0.20 0.68 16 15 Si 0.99 -2.88 11.76 -169.99 -2.00 -4.88 16 16 C -0.44 0.82 8.65 101.05 0.87 1.70 16 17 C -0.45 1.03 8.65 101.05 0.87 1.91 16 18 C -0.40 0.81 5.24 37.64 0.20 1.00 16 19 C 0.06 -0.04 4.78 -3.59 -0.02 -0.06 16 20 S 0.09 0.12 20.77 -107.50 -2.23 -2.12 16 21 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 22 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 23 H 0.08 -0.10 6.41 -51.93 -0.33 -0.44 16 24 H 0.12 0.00 7.96 -51.93 -0.41 -0.41 16 25 H 0.38 -0.96 8.13 45.56 0.37 -0.59 16 26 H 0.05 -0.05 7.58 -51.93 -0.39 -0.44 16 27 H 0.09 0.19 7.27 -51.93 -0.38 -0.19 16 28 H 0.09 -0.02 7.99 -51.93 -0.42 -0.44 16 29 H 0.09 -0.18 7.99 -51.93 -0.42 -0.59 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 36 H 0.09 -0.12 7.99 -51.93 -0.42 -0.53 16 37 H 0.09 -0.28 8.00 -51.93 -0.42 -0.69 16 38 H 0.08 -0.05 6.33 -51.79 -0.33 -0.38 16 39 H 0.06 -0.12 7.58 -51.93 -0.39 -0.52 16 LS Contribution 320.04 15.07 4.82 4.82 Total: 0.00 -4.85 320.04 -9.70 -14.55 By element: Atomic # 1 Polarization: -4.82 SS G_CDS: -5.65 Total: -10.47 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 1.20 Total: 4.70 kcal Atomic # 7 Polarization: -2.50 SS G_CDS: -0.83 Total: -3.33 kcal Atomic # 8 Polarization: -0.08 SS G_CDS: -0.36 Total: -0.44 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -6.65 Total: -7.72 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.23 Total: -2.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -4.85 -9.70 -14.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969770_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.954 kcal (2) G-P(sol) polarization free energy of solvation -4.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds