Wall clock time and date at job start Mon Mar 8 2021 07:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50701 * 122.70899 * 0.02562 * 3 2 1 5 5 O 1.42894 * 109.47204 * 30.00205 * 4 3 2 6 6 Si 1.86303 * 109.46999 * 150.00033 * 4 3 2 7 7 H 1.48506 * 109.47173 * 59.99382 * 6 4 3 8 8 H 1.48493 * 109.47396 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46893 * 300.00131 * 6 4 3 10 10 N 1.32119 * 114.57789 * 179.82832 * 3 2 1 11 11 C 1.29691 * 116.86662 * 0.47839 * 10 3 2 12 12 N 1.38603 * 124.95113 * 179.73721 * 11 10 3 13 13 C 1.46447 * 111.00131 * 307.38320 * 12 11 10 14 14 C 1.53925 * 109.45826 * 155.02862 * 13 12 11 15 15 Si 1.87575 * 106.83974 * 58.00891 * 14 13 12 16 16 C 1.86298 * 110.03061 * 196.89341 * 15 14 13 17 17 C 1.86301 * 110.11562 * 75.46269 * 15 14 13 18 18 C 1.87570 * 106.56276 * 316.15763 * 15 14 13 19 19 C 1.46447 * 111.00403 * 179.97438 * 12 11 10 20 20 S 1.70975 * 110.09880 * 359.73947 * 11 10 3 21 21 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 24 24 H 1.08997 * 109.46922 * 269.99694 * 4 3 2 25 25 H 0.96703 * 114.00558 * 59.99653 * 5 4 3 26 26 H 1.08997 * 109.46686 * 275.02309 * 13 12 11 27 27 H 1.08995 * 109.47415 * 35.03349 * 13 12 11 28 28 H 1.09000 * 109.98215 * 298.67649 * 14 13 12 29 29 H 1.09000 * 110.05185 * 177.37840 * 14 13 12 30 30 H 1.09000 * 109.47062 * 177.12231 * 16 15 14 31 31 H 1.08990 * 109.47074 * 297.12321 * 16 15 14 32 32 H 1.09002 * 109.47263 * 57.12661 * 16 15 14 33 33 H 1.08999 * 109.47424 * 302.82805 * 17 15 14 34 34 H 1.09007 * 109.46570 * 62.83102 * 17 15 14 35 35 H 1.09004 * 109.46918 * 182.82538 * 17 15 14 36 36 H 1.08996 * 109.98058 * 284.50629 * 18 15 14 37 37 H 1.08997 * 110.05638 * 163.21427 * 18 15 14 38 38 H 1.09001 * 109.46591 * 324.97083 * 19 12 11 39 39 H 1.08996 * 109.47040 * 84.97053 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4816 2.5019 0.6747 6 14 2.9326 3.6148 0.8787 7 1 4.2419 3.5950 0.1782 8 1 2.3925 4.9980 0.8787 9 1 3.1132 3.1532 2.2786 10 7 3.5850 0.8188 0.0036 11 6 3.9315 -0.4309 -0.0030 12 7 5.2384 -0.8926 -0.0059 13 6 6.0094 -0.2790 -1.0893 14 6 7.5045 -0.2881 -0.7236 15 14 7.9814 -2.0784 -0.4305 16 6 9.5944 -2.1653 0.4976 17 6 8.1321 -2.9757 -2.0562 18 6 6.6073 -2.8364 0.5968 19 6 5.2780 -2.3565 -0.0129 20 16 2.5412 -1.4261 -0.0078 21 1 -0.3633 -1.0277 -0.0051 22 1 -0.3633 0.5183 -0.8874 23 1 -0.3633 0.5094 0.8926 24 1 1.6088 2.8217 -1.0269 25 1 0.5241 2.2118 1.5962 26 1 5.8568 -0.8440 -2.0088 27 1 5.6772 0.7488 -1.2349 28 1 7.6698 0.2945 0.1827 29 1 8.0924 0.1244 -1.5436 30 1 9.8370 -3.2070 0.7077 31 1 10.3858 -1.7227 -0.1071 32 1 9.5040 -1.6172 1.4355 33 1 7.1920 -2.8984 -2.6024 34 1 8.9326 -2.5281 -2.6453 35 1 8.3600 -4.0256 -1.8719 36 1 6.6860 -2.4998 1.6305 37 1 6.6653 -3.9240 0.5543 38 1 4.4469 -2.7451 0.5756 39 1 5.1973 -2.7172 -1.0383 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16969770_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:56:39 Heat of formation + Delta-G solvation = -13.111964 kcal Electronic energy + Delta-G solvation = -19133.137110 eV Core-core repulsion = 16326.341667 eV Total energy + Delta-G solvation = -2806.795443 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40728 -39.44528 -37.43605 -33.24303 -32.34846 -30.95022 -29.26694 -28.66542 -28.35760 -25.73318 -24.57611 -24.04203 -22.07391 -20.29023 -19.27931 -18.06295 -17.48419 -16.85310 -16.11698 -16.06805 -15.94748 -15.12904 -14.84919 -14.35039 -14.24551 -14.10591 -13.96689 -13.65808 -13.65117 -13.52023 -13.46845 -13.18614 -13.06859 -12.98750 -12.77123 -12.73618 -12.38780 -12.35756 -12.26738 -11.87502 -11.07315 -10.80445 -10.70694 -10.52529 -10.38790 -10.25964 -10.06186 -8.94804 -0.29770 0.13937 0.61441 1.10379 1.44348 1.55267 1.65755 1.76165 1.92757 2.00889 2.01438 2.17552 2.63730 3.29919 3.46927 3.84700 4.05329 4.08418 4.12392 4.24641 4.28757 4.46748 4.54133 4.61061 4.70455 4.81691 4.82376 4.82764 4.83923 4.85602 4.87799 4.94411 5.04194 5.28556 5.37181 5.40200 5.54582 5.60384 5.64773 5.70952 6.51615 6.77605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.220 4.220 3 C 0.027 3.973 4 C -0.032 4.032 5 O -0.535 6.535 6 Si 1.005 2.995 7 H -0.273 1.273 8 H -0.265 1.265 9 H -0.278 1.278 10 N -0.528 5.528 11 C 0.227 3.773 12 N -0.462 5.462 13 C 0.073 3.927 14 C -0.418 4.418 15 Si 1.061 2.939 16 C -0.457 4.457 17 C -0.455 4.455 18 C -0.408 4.408 19 C 0.053 3.947 20 S 0.115 5.885 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.134 0.866 25 H 0.388 0.612 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 -4.041 -1.126 4.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.342 4.342 3 C -0.104 4.104 4 C -0.146 4.146 5 O -0.341 6.341 6 Si 0.831 3.169 7 H -0.198 1.198 8 H -0.189 1.189 9 H -0.203 1.203 10 N -0.250 5.250 11 C -0.142 4.142 12 N -0.184 5.184 13 C -0.054 4.054 14 C -0.502 4.502 15 Si 1.252 2.748 16 C -0.565 4.565 17 C -0.563 4.563 18 C -0.493 4.493 19 C -0.073 4.073 20 S 0.367 5.633 21 H 0.086 0.914 22 H 0.099 0.901 23 H 0.113 0.887 24 H 0.151 0.849 25 H 0.238 0.762 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.351 -3.843 -0.867 4.165 hybrid contribution -0.482 0.333 -0.073 0.590 sum 0.869 -3.510 -0.940 3.737 Atomic orbital electron populations 1.20297 0.84780 1.02584 1.04517 1.25730 1.02633 0.93380 1.12497 1.20520 0.86797 0.98388 1.04706 1.24278 0.92325 0.93993 1.04000 1.86507 1.28169 1.89539 1.29917 0.84817 0.76936 0.76863 0.78283 1.19822 1.18927 1.20258 1.65996 1.17895 1.18411 1.22718 1.25257 0.94874 0.92053 1.02030 1.57251 1.04856 1.10367 1.45880 1.22019 0.94007 0.99759 0.89593 1.26612 0.96329 1.21881 1.05359 0.78657 0.65398 0.64542 0.66155 1.26182 1.17054 1.04720 1.08502 1.26195 1.04678 1.08685 1.16706 1.26453 1.06691 1.07340 1.08839 1.22242 1.00984 0.81667 1.02433 1.83998 0.97351 1.10856 1.71071 0.91407 0.90118 0.88690 0.84858 0.76231 0.91477 0.91040 0.90757 0.88799 0.90764 0.91125 0.91620 0.91293 0.90958 0.90529 0.90066 0.87683 0.90108 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.08 8.90 71.24 0.63 0.72 16 2 C -0.22 -0.73 6.50 24.58 0.16 -0.57 16 3 C 0.03 0.15 5.92 41.41 0.25 0.40 16 4 C -0.03 -0.08 2.94 71.24 0.21 0.13 16 5 O -0.54 0.07 10.18 -148.98 -1.52 -1.45 16 6 Si 1.01 5.23 27.36 68.60 1.88 7.11 16 7 H -0.27 -2.68 7.11 99.48 0.71 -1.98 16 8 H -0.26 -1.45 7.11 99.48 0.71 -0.75 16 9 H -0.28 -2.20 7.11 99.48 0.71 -1.49 16 10 N -0.53 -4.86 8.18 -189.85 -1.55 -6.41 16 11 C 0.23 1.45 6.83 179.32 1.23 2.67 16 12 N -0.46 -1.57 4.22 -707.47 -2.99 -4.56 16 13 C 0.07 0.13 5.30 86.70 0.46 0.59 16 14 C -0.42 0.64 5.24 72.29 0.38 1.01 16 15 Si 1.06 -6.54 11.76 68.60 0.81 -5.74 16 16 C -0.46 1.75 8.65 113.37 0.98 2.73 16 17 C -0.46 2.62 8.65 113.37 0.98 3.61 16 18 C -0.41 1.84 5.24 72.29 0.38 2.22 16 19 C 0.05 -0.09 4.78 86.70 0.41 0.33 16 20 S 0.12 0.29 20.77 -56.49 -1.17 -0.88 16 21 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 22 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 23 H 0.09 -0.33 6.41 -2.38 -0.02 -0.35 16 24 H 0.13 0.03 7.96 -2.39 -0.02 0.01 16 25 H 0.39 -2.15 8.13 -74.06 -0.60 -2.75 16 26 H 0.07 -0.11 7.58 -2.39 -0.02 -0.13 16 27 H 0.07 0.45 7.27 -2.39 -0.02 0.43 16 28 H 0.07 0.09 7.99 -2.39 -0.02 0.07 16 29 H 0.09 -0.33 7.99 -2.39 -0.02 -0.35 16 30 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 31 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 33 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H 0.07 -0.39 7.96 -2.38 -0.02 -0.40 16 35 H 0.08 -0.48 7.96 -2.39 -0.02 -0.50 16 36 H 0.08 -0.20 7.99 -2.39 -0.02 -0.22 16 37 H 0.10 -0.80 8.00 -2.39 -0.02 -0.82 16 38 H 0.08 -0.11 6.33 -2.47 -0.02 -0.12 16 39 H 0.08 -0.37 7.58 -2.39 -0.02 -0.39 16 Total: 0.00 -12.02 320.04 2.71 -9.31 By element: Atomic # 1 Polarization: -12.41 SS G_CDS: 1.19 Total: -11.23 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.07 Total: 13.84 kcal Atomic # 7 Polarization: -6.43 SS G_CDS: -4.54 Total: -10.97 kcal Atomic # 8 Polarization: 0.07 SS G_CDS: -1.52 Total: -1.45 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: 2.68 Total: 1.37 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.17 Total: -0.88 kcal Total: -12.02 2.71 -9.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969770_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.801 kcal (2) G-P(sol) polarization free energy of solvation -12.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds