Wall clock time and date at job start Mon Mar 8 2021 07:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86307 * 110.09289 * 2 1 4 4 C 1.87573 * 110.02966 * 121.43489 * 2 1 3 5 5 C 1.53926 * 106.91513 * 163.05723 * 4 2 1 6 6 N 1.46456 * 109.45226 * 302.13746 * 5 4 2 7 7 C 1.39156 * 110.95577 * 204.87354 * 6 5 4 8 8 C 1.39291 * 119.71962 * 52.50782 * 7 6 5 9 9 F 1.35102 * 120.47047 * 359.97438 * 8 7 6 10 10 C 1.38490 * 119.06187 * 179.97438 * 8 7 6 11 11 C 1.38855 * 118.47788 * 0.02562 * 10 8 7 12 12 C 1.50709 * 120.32535 * 179.97438 * 11 10 8 13 13 O 1.42904 * 109.46938 * 300.00092 * 12 11 10 14 14 Si 1.86296 * 109.47190 * 179.97438 * 12 11 10 15 15 H 1.48500 * 109.47211 * 60.00207 * 14 12 11 16 16 H 1.48503 * 109.46961 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47343 * 299.99886 * 14 12 11 18 18 C 1.38031 * 119.35279 * 359.97438 * 11 10 8 19 19 N 1.31977 * 120.89119 * 359.74760 * 18 11 10 20 20 C 1.46444 * 113.73091 * 78.88787 * 6 5 4 21 21 C 1.53928 * 109.45564 * 280.99215 * 20 6 5 22 22 H 1.09001 * 109.46920 * 298.56622 * 1 2 3 23 23 H 1.09000 * 109.46996 * 58.56115 * 1 2 3 24 24 H 1.08994 * 109.47083 * 178.56514 * 1 2 3 25 25 H 1.08998 * 109.46658 * 181.43671 * 3 2 1 26 26 H 1.09000 * 109.46602 * 301.43739 * 3 2 1 27 27 H 1.09000 * 109.47003 * 61.43974 * 3 2 1 28 28 H 1.09002 * 109.98043 * 282.43552 * 4 2 1 29 29 H 1.09000 * 109.97934 * 43.68500 * 4 2 1 30 30 H 1.09005 * 109.47242 * 62.03295 * 5 4 2 31 31 H 1.08999 * 109.47490 * 182.04103 * 5 4 2 32 32 H 1.07996 * 120.75809 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.46712 * 59.99485 * 12 11 10 34 34 H 0.96703 * 113.99471 * 299.99420 * 13 12 11 35 35 H 1.07999 * 119.55234 * 180.02562 * 18 11 10 36 36 H 1.09005 * 109.47002 * 160.99964 * 20 6 5 37 37 H 1.08994 * 109.47706 * 40.99058 * 20 6 5 38 38 H 1.08998 * 109.98040 * 298.67643 * 21 20 6 39 39 H 1.09000 * 110.05151 * 177.38303 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5030 1.7497 0.0000 4 6 2.5054 -0.9191 1.5036 5 6 3.9824 -1.2531 1.2271 6 7 4.0816 -2.0464 0.0001 7 6 5.2378 -2.8207 0.0002 8 6 5.5133 -3.6502 1.0847 9 9 4.6665 -3.7077 2.1358 10 6 6.6676 -4.4153 1.0703 11 6 7.5089 -4.3238 -0.0306 12 6 8.7762 -5.1373 -0.0896 13 8 9.6172 -4.7894 1.0121 14 14 9.6669 -4.7845 -1.6873 15 1 10.0024 -3.3396 -1.7583 16 1 10.9153 -5.5866 -1.7456 17 1 8.7927 -5.1464 -2.8318 18 6 7.1731 -3.4805 -1.0705 19 7 6.0637 -2.7667 -1.0328 20 6 3.9826 -1.2511 -1.2256 21 6 2.5054 -0.9192 -1.5035 22 1 -0.3633 0.4914 0.9026 23 1 -0.3633 0.5360 -0.8768 24 1 -0.3633 -1.0273 -0.0257 25 1 3.5926 1.7379 -0.0258 26 1 2.1244 2.2750 -0.8768 27 1 2.1664 2.2597 0.9026 28 1 2.4258 -0.2874 2.3884 29 1 1.9370 -1.8376 1.6497 30 1 4.5476 -0.3288 1.1073 31 1 4.3890 -1.8219 2.0633 32 1 6.9079 -5.0681 1.8964 33 1 8.5298 -6.1979 -0.0378 34 1 9.8766 -3.8580 1.0300 35 1 7.8249 -3.4071 -1.9285 36 1 4.3908 -1.8194 -2.0614 37 1 4.5464 -0.3262 -1.1051 38 1 1.9381 -1.8385 -1.6486 39 1 2.4243 -0.2881 -2.3885 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16969770_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:58:29 Heat of formation + Delta-G solvation = -52.746749 kcal Electronic energy + Delta-G solvation = -20976.527247 eV Core-core repulsion = 17764.944508 eV Total energy + Delta-G solvation = -3211.582739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.15401 -41.80070 -39.22858 -37.55525 -33.69038 -32.65611 -32.11189 -30.03400 -28.91545 -28.37161 -26.34744 -25.46772 -23.61583 -23.15076 -21.83230 -19.10492 -18.82081 -18.34686 -17.61302 -17.11079 -16.45643 -16.12414 -16.03652 -15.78762 -15.75936 -14.83145 -14.65918 -14.41373 -14.11151 -14.01453 -13.81848 -13.68582 -13.51847 -13.36073 -13.18273 -13.06364 -12.93122 -12.63377 -12.52989 -12.30359 -12.13681 -12.02608 -11.25894 -10.85856 -10.81086 -10.68583 -10.46821 -10.43782 -10.16191 -9.12763 -0.30951 -0.09172 1.14274 1.47672 1.52423 1.78199 1.93077 1.95694 2.00779 2.13682 2.39063 2.65602 2.98304 3.17415 3.38358 3.58418 3.71546 3.78244 4.03973 4.15049 4.26155 4.37417 4.38901 4.47228 4.59742 4.63660 4.71291 4.80296 4.80895 4.83570 4.84305 4.86576 4.92634 4.99239 5.28392 5.39457 5.42355 5.57981 5.63060 5.70740 5.90136 6.62854 6.68132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.455 4.455 2 Si 1.054 2.946 3 C -0.455 4.455 4 C -0.411 4.411 5 C 0.054 3.946 6 N -0.490 5.490 7 C 0.290 3.710 8 C 0.009 3.991 9 F -0.128 7.128 10 C -0.051 4.051 11 C -0.173 4.173 12 C -0.067 4.067 13 O -0.549 6.549 14 Si 0.975 3.025 15 H -0.247 1.247 16 H -0.269 1.269 17 H -0.253 1.253 18 C 0.113 3.887 19 N -0.509 5.509 20 C 0.071 3.929 21 C -0.415 4.415 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.133 0.867 34 H 0.390 0.610 35 H 0.174 0.826 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 1.774 -0.507 2.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.246 2.754 3 C -0.562 4.562 4 C -0.496 4.496 5 C -0.071 4.071 6 N -0.207 5.207 7 C 0.056 3.944 8 C -0.016 4.016 9 F -0.107 7.107 10 C -0.078 4.078 11 C -0.177 4.177 12 C -0.178 4.178 13 O -0.356 6.356 14 Si 0.798 3.202 15 H -0.170 1.170 16 H -0.193 1.193 17 H -0.177 1.177 18 C -0.044 4.044 19 N -0.223 5.223 20 C -0.054 4.054 21 C -0.500 4.500 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.184 0.816 33 H 0.151 0.849 34 H 0.240 0.760 35 H 0.190 0.810 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.694 1.646 -1.792 2.530 hybrid contribution 0.294 0.077 1.110 1.151 sum 0.988 1.723 -0.681 2.100 Atomic orbital electron populations 1.26152 1.20980 1.04405 1.04676 0.78744 0.66027 0.65459 0.65150 1.26196 1.06134 1.18982 1.04893 1.26495 0.98091 1.08905 1.16082 1.22221 0.99482 0.95939 0.89445 1.57960 1.29078 1.27419 1.06248 1.20130 0.89683 0.94935 0.89652 1.18267 0.92665 1.03473 0.87144 1.91444 1.69607 1.94962 1.54690 1.21584 0.90279 0.96389 0.99526 1.21221 0.99941 1.01387 0.95164 1.24929 0.89086 1.02402 1.01418 1.86512 1.67794 1.33406 1.47926 0.85314 0.79126 0.80982 0.74761 1.17007 1.19338 1.17711 1.22838 0.92649 0.90962 0.97983 1.67722 1.04429 1.24579 1.25590 1.21808 0.97733 0.95877 0.90019 1.26533 0.98806 1.08694 1.15919 0.90948 0.90971 0.91499 0.91643 0.90814 0.90792 0.88623 0.90374 0.92090 0.89776 0.81564 0.84933 0.76036 0.80971 0.89760 0.92503 0.90653 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.15 8.65 113.37 0.98 2.13 16 2 Si 1.05 -4.36 11.77 68.60 0.81 -3.55 16 3 C -0.45 1.58 8.65 113.37 0.98 2.56 16 4 C -0.41 0.46 5.24 72.29 0.38 0.83 16 5 C 0.05 0.11 4.98 86.70 0.43 0.54 16 6 N -0.49 -2.30 4.16 -700.23 -2.91 -5.21 16 7 C 0.29 1.81 6.46 133.06 0.86 2.67 16 8 C 0.01 0.05 6.82 22.58 0.15 0.20 16 9 F -0.13 -0.88 14.69 44.97 0.66 -0.22 16 10 C -0.05 -0.06 9.75 22.48 0.22 0.16 16 11 C -0.17 0.13 5.40 -19.76 -0.11 0.03 16 12 C -0.07 0.28 2.83 71.24 0.20 0.48 16 13 O -0.55 1.54 12.78 -148.98 -1.90 -0.37 16 14 Si 0.97 -4.08 25.10 68.60 1.72 -2.36 16 15 H -0.25 1.06 7.11 99.48 0.71 1.77 16 16 H -0.27 0.15 7.11 99.48 0.71 0.86 16 17 H -0.25 0.76 7.11 99.48 0.71 1.46 16 18 C 0.11 0.14 9.84 84.62 0.83 0.97 16 19 N -0.51 -2.85 8.27 -193.03 -1.60 -4.44 16 20 C 0.07 0.19 4.90 86.70 0.42 0.62 16 21 C -0.42 0.32 5.24 72.30 0.38 0.70 16 22 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 23 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 24 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 25 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 26 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 28 H 0.10 -0.34 7.99 -2.39 -0.02 -0.35 16 29 H 0.08 0.07 7.99 -2.39 -0.02 0.05 16 30 H 0.06 0.00 7.58 -2.38 -0.02 -0.02 16 31 H 0.08 0.31 5.09 -2.39 -0.01 0.30 16 32 H 0.17 -0.29 8.06 -2.91 -0.02 -0.31 16 33 H 0.13 -0.81 7.96 -2.39 -0.02 -0.83 16 34 H 0.39 -3.52 8.70 -74.06 -0.64 -4.16 16 35 H 0.17 -0.49 4.88 -2.91 -0.01 -0.50 16 36 H 0.08 0.45 6.80 -2.38 -0.02 0.44 16 37 H 0.06 0.07 7.58 -2.39 -0.02 0.05 16 38 H 0.07 0.08 7.99 -2.39 -0.02 0.06 16 39 H 0.09 -0.27 7.99 -2.39 -0.02 -0.29 16 Total: 0.00 -10.77 313.26 3.68 -7.10 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: 1.16 Total: -2.83 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.74 Total: 11.88 kcal Atomic # 7 Polarization: -5.14 SS G_CDS: -4.51 Total: -9.65 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: -1.90 Total: -0.37 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 0.66 Total: -0.22 kcal Atomic # 14 Polarization: -8.44 SS G_CDS: 2.53 Total: -5.91 kcal Total: -10.77 3.68 -7.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969770_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.651 kcal (2) G-P(sol) polarization free energy of solvation -10.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds