Wall clock time and date at job start Mon Mar 8 2021 08:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86301 * 109.47004 * 2 1 4 4 C 1.50699 * 109.47469 * 239.99913 * 2 1 3 5 5 C 1.38838 * 120.33318 * 300.00030 * 4 2 1 6 6 C 1.38345 * 118.50628 * 180.02562 * 5 4 2 7 7 C 1.39099 * 119.09556 * 359.97438 * 6 5 4 8 8 N 1.39003 * 119.70110 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00532 * 0.02562 * 8 7 6 10 10 H 1.09008 * 112.84657 * 334.66364 * 9 8 7 11 11 C 1.53780 * 113.61800 * 105.85912 * 9 8 7 12 12 C 1.54055 * 86.98403 * 89.16666 * 11 9 8 13 13 H 1.09002 * 113.61274 * 270.88710 * 12 11 9 14 14 C 1.50702 * 113.69752 * 139.99332 * 12 11 9 15 15 N 1.30493 * 125.64659 * 167.15915 * 14 12 11 16 16 C 1.34133 * 109.25371 * 179.89286 * 15 14 12 17 17 C 1.34675 * 108.01771 * 0.36381 * 16 15 14 18 18 N 1.35042 * 125.64605 * 347.46390 * 14 12 11 19 19 C 1.53776 * 87.07605 * 25.43022 * 12 11 9 20 20 N 1.32423 * 120.59143 * 0.02562 * 7 6 5 21 21 C 1.31940 * 121.62349 * 359.95721 * 20 7 6 22 22 H 0.96701 * 113.99819 * 60.00402 * 1 2 3 23 23 H 1.09003 * 109.47007 * 119.99681 * 2 1 3 24 24 H 1.48498 * 109.99766 * 298.67652 * 3 2 1 25 25 H 1.48496 * 110.00400 * 59.99711 * 3 2 1 26 26 H 1.08001 * 120.75035 * 0.04159 * 5 4 2 27 27 H 1.07994 * 120.45234 * 179.72750 * 6 5 4 28 28 H 0.97007 * 119.99955 * 180.02562 * 8 7 6 29 29 H 1.08994 * 113.61465 * 203.66302 * 11 9 8 30 30 H 1.08994 * 113.61498 * 334.57468 * 11 9 8 31 31 H 1.07995 * 125.99490 * 180.11845 * 16 15 14 32 32 H 1.08002 * 126.58786 * 179.74029 * 17 16 15 33 33 H 0.97001 * 126.39948 * 359.94535 * 18 14 12 34 34 H 1.09000 * 113.61446 * 220.02087 * 19 12 11 35 35 H 1.09003 * 113.61269 * 89.12414 * 19 12 11 36 36 H 1.07996 * 119.57646 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6003 -2.0396 -1.4570 6 6 2.0825 -2.6548 -2.5984 7 6 2.8778 -1.9249 -3.4757 8 7 3.3686 -2.5304 -4.6266 9 6 3.0473 -3.9310 -4.9115 10 1 2.8202 -4.5044 -4.0127 11 6 2.0116 -4.1094 -6.0342 12 6 3.1988 -4.1267 -7.0157 13 1 3.4794 -3.1380 -7.3790 14 6 3.0541 -5.1379 -8.1237 15 7 3.7868 -5.1948 -9.2019 16 6 3.3771 -6.2215 -9.9615 17 6 2.3462 -6.8188 -9.3337 18 7 2.1408 -6.1317 -8.1678 19 6 4.0609 -4.6188 -5.8412 20 7 3.1715 -0.6583 -3.2242 21 6 2.7254 -0.0461 -2.1440 22 1 -0.3933 0.4417 -0.7651 23 1 1.7923 -0.5138 0.8900 24 1 1.5879 2.4585 -1.2243 25 1 1.5614 2.4680 1.2084 26 1 0.9800 -2.5810 -0.7581 27 1 1.8480 -3.6888 -2.8035 28 1 3.9240 -2.0255 -5.2412 29 1 1.4725 -5.0554 -5.9845 30 1 1.3518 -3.2511 -6.1599 31 1 3.7973 -6.5152 -10.9121 32 1 1.7882 -7.6749 -9.6833 33 1 1.4656 -6.3231 -7.4981 34 1 5.0544 -4.1714 -5.8113 35 1 4.0810 -5.7038 -5.7389 36 1 2.9850 0.9880 -1.9718 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16969812_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:10:37 Heat of formation + Delta-G solvation = 106.463416 kcal Electronic energy + Delta-G solvation = -19948.288105 eV Core-core repulsion = 16822.202072 eV Total energy + Delta-G solvation = -3126.086033 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.12490 -41.55203 -40.21209 -37.99352 -35.40231 -33.46402 -33.39907 -31.50948 -30.34945 -27.05433 -26.90152 -25.79510 -24.74369 -22.98743 -22.40579 -21.71960 -20.51589 -19.48084 -18.55388 -18.53468 -17.51721 -16.59821 -16.50691 -16.32805 -16.09688 -15.93599 -15.36870 -15.22046 -15.06058 -14.63077 -14.56329 -14.25046 -14.05242 -13.81891 -13.63944 -13.31337 -12.61768 -12.45466 -12.17306 -11.97721 -11.66511 -11.20841 -10.98839 -10.97316 -10.79502 -10.54806 -10.39118 -9.36512 -8.78695 -4.95892 0.20506 0.38854 1.05018 1.29589 1.59649 1.88404 1.97386 2.09962 2.16947 2.79396 3.09771 3.24185 3.36064 3.40895 3.52738 3.60658 3.74138 3.84744 3.96915 4.02570 4.08180 4.27648 4.29598 4.35408 4.45917 4.51272 4.55912 4.63169 4.69130 4.71212 4.79661 4.94587 4.98325 5.12765 5.27789 5.47692 5.78463 5.93413 6.34319 6.39977 6.45619 7.11577 7.13816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.059 4.059 3 Si 0.678 3.322 4 C -0.232 4.232 5 C -0.006 4.006 6 C -0.238 4.238 7 C 0.410 3.590 8 N -0.705 5.705 9 C 0.134 3.866 10 H 0.103 0.897 11 C -0.156 4.156 12 C -0.024 4.024 13 H 0.120 0.880 14 C 0.217 3.783 15 N -0.486 5.486 16 C -0.027 4.027 17 C -0.056 4.056 18 N -0.566 5.566 19 C -0.132 4.132 20 N -0.537 5.537 21 C 0.157 3.843 22 H 0.375 0.625 23 H 0.117 0.883 24 H -0.258 1.258 25 H -0.256 1.256 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.409 0.591 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.417 0.583 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 -3.320 1.176 3.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.170 4.170 3 Si 0.579 3.421 4 C -0.238 4.238 5 C -0.032 4.032 6 C -0.263 4.263 7 C 0.174 3.826 8 N -0.337 5.337 9 C 0.027 3.973 10 H 0.121 0.879 11 C -0.195 4.195 12 C -0.044 4.044 13 H 0.138 0.862 14 C -0.047 4.047 15 N -0.206 5.206 16 C -0.175 4.175 17 C -0.190 4.190 18 N -0.170 5.170 19 C -0.171 4.171 20 N -0.254 5.254 21 C 0.000 4.000 22 H 0.223 0.777 23 H 0.135 0.865 24 H -0.183 1.183 25 H -0.181 1.181 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.246 0.754 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.189 0.811 32 H 0.195 0.805 33 H 0.255 0.745 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.204 -2.007 0.859 2.192 hybrid contribution -2.425 -1.285 0.033 2.745 sum -2.221 -3.292 0.892 4.070 Atomic orbital electron populations 1.86591 1.17965 1.79925 1.49339 1.24757 0.83680 1.10572 0.97991 0.95150 0.91712 0.74696 0.80525 1.20950 1.05882 0.96578 1.00351 1.21198 0.93837 0.93226 0.94891 1.21485 1.05549 1.01733 0.97532 1.18347 0.89158 0.88485 0.86562 1.44136 1.55909 1.10928 1.22682 1.21768 0.95843 0.82078 0.97611 0.87896 1.23675 0.96970 1.03148 0.95747 1.21078 0.97766 0.96643 0.88876 0.86237 1.22938 0.90878 0.93350 0.97500 1.70251 1.26633 1.20535 1.03150 1.22431 0.97956 0.95543 1.01537 1.22828 1.04200 1.02588 0.89356 1.43257 1.28925 1.25493 1.19278 1.23395 0.99081 1.01602 0.93021 1.67144 1.27186 1.08992 1.22069 1.22231 0.91349 0.98696 0.87760 0.77720 0.86534 1.18289 1.18060 0.84624 0.84825 0.75443 0.89496 0.89644 0.81149 0.80450 0.74466 0.89399 0.88354 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.45 12.78 -35.23 -0.45 -0.90 16 2 C -0.06 0.03 2.84 36.00 0.10 0.14 16 3 Si 0.68 -0.75 29.82 -169.99 -5.07 -5.81 16 4 C -0.23 -0.01 5.40 -104.46 -0.56 -0.58 16 5 C -0.01 0.00 9.76 -39.32 -0.38 -0.38 16 6 C -0.24 0.07 9.28 -39.22 -0.36 -0.29 16 7 C 0.41 0.32 7.65 -155.01 -1.19 -0.86 16 8 N -0.70 0.88 5.44 -53.15 -0.29 0.59 16 9 C 0.13 -0.42 4.07 -67.12 -0.27 -0.70 16 10 H 0.10 -0.41 6.17 -51.92 -0.32 -0.73 16 11 C -0.16 0.53 7.38 -25.78 -0.19 0.34 16 12 C -0.02 0.04 4.18 -90.82 -0.38 -0.34 16 13 H 0.12 -0.13 8.14 -51.93 -0.42 -0.55 16 14 C 0.22 0.21 7.37 -155.42 -1.14 -0.94 16 15 N -0.49 -1.93 11.25 -10.82 -0.12 -2.05 16 16 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 17 C -0.06 0.02 12.04 -16.56 -0.20 -0.18 16 18 N -0.57 0.64 5.94 -10.23 -0.06 0.58 16 19 C -0.13 0.36 7.37 -25.92 -0.19 0.17 16 20 N -0.54 -1.15 10.39 -12.44 -0.13 -1.28 16 21 C 0.16 0.12 9.84 -17.57 -0.17 -0.06 16 22 H 0.38 -0.66 8.70 45.56 0.40 -0.27 16 23 H 0.12 -0.15 7.96 -51.93 -0.41 -0.57 16 24 H -0.26 -0.24 7.11 56.52 0.40 0.16 16 25 H -0.26 -0.57 7.11 56.52 0.40 -0.17 16 26 H 0.14 -0.16 8.06 -52.49 -0.42 -0.58 16 27 H 0.13 -0.31 6.06 -52.49 -0.32 -0.63 16 28 H 0.41 -0.56 8.83 -40.82 -0.36 -0.92 16 29 H 0.09 -0.43 6.65 -51.93 -0.35 -0.78 16 30 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 31 H 0.17 0.03 8.06 -52.49 -0.42 -0.39 16 32 H 0.18 -0.61 8.06 -52.49 -0.42 -1.03 16 33 H 0.42 -1.73 7.54 -40.82 -0.31 -2.04 16 34 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 35 H 0.10 -0.30 8.09 -51.93 -0.42 -0.72 16 36 H 0.16 -0.17 4.88 -52.49 -0.26 -0.43 16 LS Contribution 302.35 15.07 4.56 4.56 Total: 0.00 -8.33 302.35 -10.80 -19.13 By element: Atomic # 1 Polarization: -6.79 SS G_CDS: -4.08 Total: -10.87 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -5.16 Total: -3.95 kcal Atomic # 7 Polarization: -1.56 SS G_CDS: -0.60 Total: -2.16 kcal Atomic # 8 Polarization: -0.45 SS G_CDS: -0.45 Total: -0.90 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: -5.07 Total: -5.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -8.33 -10.80 -19.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969812_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.598 kcal (2) G-P(sol) polarization free energy of solvation -8.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds