Wall clock time and date at job start Mon Mar 8 2021 08:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86301 * 109.47004 * 2 1 4 4 C 1.50699 * 109.47469 * 239.99913 * 2 1 3 5 5 C 1.38838 * 120.33318 * 300.00030 * 4 2 1 6 6 C 1.38345 * 118.50628 * 180.02562 * 5 4 2 7 7 C 1.39099 * 119.09556 * 359.97438 * 6 5 4 8 8 N 1.39003 * 119.70110 * 180.02562 * 7 6 5 9 9 C 1.46499 * 120.00532 * 0.02562 * 8 7 6 10 10 H 1.09008 * 112.84657 * 334.66364 * 9 8 7 11 11 C 1.53780 * 113.61800 * 105.85912 * 9 8 7 12 12 C 1.54055 * 86.98403 * 89.16666 * 11 9 8 13 13 H 1.09002 * 113.61274 * 270.88710 * 12 11 9 14 14 C 1.50702 * 113.69752 * 139.99332 * 12 11 9 15 15 N 1.30493 * 125.64659 * 167.15915 * 14 12 11 16 16 C 1.34133 * 109.25371 * 179.89286 * 15 14 12 17 17 C 1.34675 * 108.01771 * 0.36381 * 16 15 14 18 18 N 1.35042 * 125.64605 * 347.46390 * 14 12 11 19 19 C 1.53776 * 87.07605 * 25.43022 * 12 11 9 20 20 N 1.32423 * 120.59143 * 0.02562 * 7 6 5 21 21 C 1.31940 * 121.62349 * 359.95721 * 20 7 6 22 22 H 0.96701 * 113.99819 * 60.00402 * 1 2 3 23 23 H 1.09003 * 109.47007 * 119.99681 * 2 1 3 24 24 H 1.48498 * 109.99766 * 298.67652 * 3 2 1 25 25 H 1.48496 * 110.00400 * 59.99711 * 3 2 1 26 26 H 1.08001 * 120.75035 * 0.04159 * 5 4 2 27 27 H 1.07994 * 120.45234 * 179.72750 * 6 5 4 28 28 H 0.97007 * 119.99955 * 180.02562 * 8 7 6 29 29 H 1.08994 * 113.61465 * 203.66302 * 11 9 8 30 30 H 1.08994 * 113.61498 * 334.57468 * 11 9 8 31 31 H 1.07995 * 125.99490 * 180.11845 * 16 15 14 32 32 H 1.08002 * 126.58786 * 179.74029 * 17 16 15 33 33 H 0.97001 * 126.39948 * 359.94535 * 18 14 12 34 34 H 1.09000 * 113.61446 * 220.02087 * 19 12 11 35 35 H 1.09003 * 113.61269 * 89.12414 * 19 12 11 36 36 H 1.07996 * 119.57646 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.6003 -2.0396 -1.4570 6 6 2.0825 -2.6548 -2.5984 7 6 2.8778 -1.9249 -3.4757 8 7 3.3686 -2.5304 -4.6266 9 6 3.0473 -3.9310 -4.9115 10 1 2.8202 -4.5044 -4.0127 11 6 2.0116 -4.1094 -6.0342 12 6 3.1988 -4.1267 -7.0157 13 1 3.4794 -3.1380 -7.3790 14 6 3.0541 -5.1379 -8.1237 15 7 3.7868 -5.1948 -9.2019 16 6 3.3771 -6.2215 -9.9615 17 6 2.3462 -6.8188 -9.3337 18 7 2.1408 -6.1317 -8.1678 19 6 4.0609 -4.6188 -5.8412 20 7 3.1715 -0.6583 -3.2242 21 6 2.7254 -0.0461 -2.1440 22 1 -0.3933 0.4417 -0.7651 23 1 1.7923 -0.5138 0.8900 24 1 1.5879 2.4585 -1.2243 25 1 1.5614 2.4680 1.2084 26 1 0.9800 -2.5810 -0.7581 27 1 1.8480 -3.6888 -2.8035 28 1 3.9240 -2.0255 -5.2412 29 1 1.4725 -5.0554 -5.9845 30 1 1.3518 -3.2511 -6.1599 31 1 3.7973 -6.5152 -10.9121 32 1 1.7882 -7.6749 -9.6833 33 1 1.4656 -6.3231 -7.4981 34 1 5.0544 -4.1714 -5.8113 35 1 4.0810 -5.7038 -5.7389 36 1 2.9850 0.9880 -1.9718 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16969812_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:10:36 Heat of formation + Delta-G solvation = 106.604004 kcal Electronic energy + Delta-G solvation = -19948.282009 eV Core-core repulsion = 16822.202072 eV Total energy + Delta-G solvation = -3126.079937 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.10056 -41.49270 -40.07043 -37.98289 -35.32204 -33.47696 -33.37911 -31.45609 -30.30387 -26.85134 -26.80387 -25.70721 -24.70252 -22.94122 -22.38307 -21.70083 -20.37744 -19.36460 -18.52436 -18.46566 -17.44313 -16.50194 -16.45055 -16.28235 -16.02355 -15.88310 -15.30908 -15.15976 -14.99830 -14.56634 -14.53038 -14.25940 -13.99203 -13.62635 -13.45419 -13.30272 -12.52785 -12.37665 -12.07136 -12.00073 -11.47246 -11.10919 -11.04599 -11.01459 -10.76565 -10.52817 -10.38188 -9.35730 -8.70720 -4.90502 0.23818 0.42068 1.08684 1.34826 1.61170 1.97004 2.01973 2.11418 2.22467 2.82615 3.27593 3.39734 3.45462 3.58339 3.62874 3.78617 3.79676 3.96818 4.09480 4.12219 4.24338 4.37299 4.48578 4.52372 4.61815 4.64029 4.65071 4.78378 4.79732 4.89695 4.98348 5.03055 5.08123 5.16304 5.34584 5.56531 5.77793 6.04871 6.49667 6.50555 6.52863 7.13391 7.15552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.061 4.061 3 Si 0.753 3.247 4 C -0.233 4.233 5 C -0.012 4.012 6 C -0.238 4.238 7 C 0.397 3.603 8 N -0.704 5.704 9 C 0.138 3.862 10 H 0.120 0.880 11 C -0.143 4.143 12 C -0.029 4.029 13 H 0.107 0.893 14 C 0.211 3.789 15 N -0.537 5.537 16 C -0.066 4.066 17 C -0.043 4.043 18 N -0.555 5.555 19 C -0.124 4.124 20 N -0.566 5.566 21 C 0.145 3.855 22 H 0.384 0.616 23 H 0.127 0.873 24 H -0.286 1.286 25 H -0.301 1.301 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.407 0.593 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.210 0.790 33 H 0.433 0.567 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -4.741 1.819 5.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.171 4.171 3 Si 0.659 3.341 4 C -0.239 4.239 5 C -0.038 4.038 6 C -0.262 4.262 7 C 0.161 3.839 8 N -0.335 5.335 9 C 0.032 3.968 10 H 0.137 0.863 11 C -0.182 4.182 12 C -0.049 4.049 13 H 0.125 0.875 14 C -0.054 4.054 15 N -0.257 5.257 16 C -0.213 4.213 17 C -0.177 4.177 18 N -0.160 5.160 19 C -0.164 4.164 20 N -0.283 5.283 21 C -0.012 4.012 22 H 0.234 0.766 23 H 0.144 0.856 24 H -0.213 1.213 25 H -0.229 1.229 26 H 0.165 0.835 27 H 0.173 0.827 28 H 0.243 0.757 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.193 0.807 32 H 0.227 0.773 33 H 0.274 0.726 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.631 -3.455 1.497 3.818 hybrid contribution -2.184 -0.835 -0.203 2.347 sum -2.815 -4.289 1.294 5.291 Atomic orbital electron populations 1.86562 1.18682 1.80242 1.50147 1.24858 0.83138 1.10855 0.98249 0.94255 0.90606 0.72830 0.76413 1.20970 1.05761 0.96836 1.00284 1.21414 0.93888 0.93244 0.95234 1.21708 1.04861 1.02626 0.97040 1.18603 0.89572 0.88408 0.87280 1.44255 1.55566 1.11586 1.22090 1.21836 0.95600 0.81164 0.98219 0.86281 1.23648 0.96221 1.03928 0.94422 1.21148 0.99409 0.95590 0.88737 0.87500 1.23271 0.90811 0.93990 0.97304 1.70179 1.28623 1.22091 1.04819 1.22745 0.99686 0.96344 1.02491 1.23283 1.03075 1.02544 0.88794 1.43231 1.28687 1.24679 1.19415 1.23350 0.98654 1.01961 0.92391 1.67130 1.28283 1.10012 1.22906 1.22434 0.91708 0.99271 0.87789 0.76647 0.85561 1.21259 1.22931 0.83509 0.82699 0.75715 0.87248 0.90494 0.80728 0.77312 0.72598 0.90160 0.87585 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.79 12.78 -148.98 -1.90 -2.70 16 2 C -0.06 0.09 2.84 71.24 0.20 0.29 16 3 Si 0.75 -1.27 29.82 68.60 2.05 0.77 16 4 C -0.23 0.03 5.40 -19.76 -0.11 -0.07 16 5 C -0.01 0.01 9.76 22.44 0.22 0.23 16 6 C -0.24 0.40 9.28 22.50 0.21 0.61 16 7 C 0.40 0.56 7.65 133.05 1.02 1.58 16 8 N -0.70 1.78 5.44 -322.06 -1.75 0.03 16 9 C 0.14 -1.01 4.07 45.52 0.19 -0.83 16 10 H 0.12 -1.22 6.17 -2.38 -0.01 -1.23 16 11 C -0.14 1.12 7.38 31.21 0.23 1.35 16 12 C -0.03 0.09 4.18 -10.92 -0.05 0.04 16 13 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 14 C 0.21 0.46 7.37 138.13 1.02 1.48 16 15 N -0.54 -4.97 11.25 -188.13 -2.12 -7.09 16 16 C -0.07 -0.33 11.87 83.52 0.99 0.66 16 17 C -0.04 0.06 12.04 83.09 1.00 1.06 16 18 N -0.56 1.82 5.94 -186.27 -1.11 0.71 16 19 C -0.12 0.73 7.37 31.12 0.23 0.96 16 20 N -0.57 -2.69 10.39 -193.27 -2.01 -4.70 16 21 C 0.14 0.26 9.84 84.64 0.83 1.09 16 22 H 0.38 -1.34 8.70 -74.06 -0.64 -1.99 16 23 H 0.13 -0.43 7.96 -2.39 -0.02 -0.45 16 24 H -0.29 -0.79 7.11 99.48 0.71 -0.08 16 25 H -0.30 -1.78 7.11 99.48 0.71 -1.08 16 26 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 27 H 0.16 -1.05 6.06 -2.91 -0.02 -1.07 16 28 H 0.41 -0.78 8.83 -92.70 -0.82 -1.59 16 29 H 0.11 -1.35 6.65 -2.39 -0.02 -1.37 16 30 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 32 H 0.21 -1.86 8.06 -2.91 -0.02 -1.88 16 33 H 0.43 -4.45 7.54 -92.71 -0.70 -5.15 16 34 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 35 H 0.11 -0.75 8.09 -2.39 -0.02 -0.77 16 36 H 0.17 -0.28 4.88 -2.91 -0.01 -0.29 16 Total: 0.00 -20.77 302.35 -1.84 -22.60 By element: Atomic # 1 Polarization: -17.09 SS G_CDS: -0.98 Total: -18.07 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.98 Total: 8.44 kcal Atomic # 7 Polarization: -4.07 SS G_CDS: -6.98 Total: -11.05 kcal Atomic # 8 Polarization: -0.79 SS G_CDS: -1.90 Total: -2.70 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.05 Total: 0.77 kcal Total: -20.77 -1.84 -22.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969812_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.206 kcal (2) G-P(sol) polarization free energy of solvation -20.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds