Wall clock time and date at job start Mon Mar 8 2021 08:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86292 * 109.47088 * 2 1 4 4 C 1.50699 * 109.46963 * 240.00186 * 2 1 3 5 5 C 1.33330 * 125.95026 * 299.99624 * 4 2 1 6 6 N 1.32118 * 114.58253 * 180.02562 * 5 4 2 7 7 C 1.29696 * 116.86199 * 0.02562 * 6 5 4 8 8 N 1.38610 * 124.94589 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00242 * 0.02562 * 8 7 6 10 10 H 1.09005 * 112.85438 * 336.20084 * 9 8 7 11 11 C 1.53785 * 113.68970 * 107.46707 * 9 8 7 12 12 C 1.53786 * 87.08000 * 89.13033 * 11 9 8 13 13 H 1.09002 * 113.68875 * 270.87677 * 12 11 9 14 14 C 1.50692 * 113.61400 * 139.98289 * 12 11 9 15 15 N 1.30501 * 125.64779 * 167.52662 * 14 12 11 16 16 C 1.34134 * 109.25535 * 179.97438 * 15 14 12 17 17 C 1.34668 * 108.01972 * 0.02562 * 16 15 14 18 18 N 1.35044 * 125.65329 * 347.52646 * 14 12 11 19 19 C 1.53780 * 87.08122 * 25.43011 * 12 11 9 20 20 S 1.70964 * 110.10099 * 0.24226 * 7 6 5 21 21 H 0.96699 * 113.99826 * 59.99472 * 1 2 3 22 22 H 1.09001 * 109.47121 * 120.00056 * 2 1 3 23 23 H 1.48506 * 110.00284 * 59.99813 * 3 2 1 24 24 H 1.48498 * 110.00245 * 181.31873 * 3 2 1 25 25 H 1.08001 * 122.70910 * 0.02562 * 5 4 2 26 26 H 0.97001 * 119.99698 * 180.02562 * 8 7 6 27 27 H 1.08993 * 113.61302 * 334.58047 * 11 9 8 28 28 H 1.08998 * 113.61656 * 203.67609 * 11 9 8 29 29 H 1.08001 * 125.98356 * 179.97438 * 16 15 14 30 30 H 1.08003 * 126.59021 * 180.02562 * 17 16 15 31 31 H 0.96995 * 126.39482 * 359.97438 * 18 14 12 32 32 H 1.09002 * 113.60946 * 89.11931 * 19 12 11 33 33 H 1.08995 * 113.61810 * 219.93458 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6835 -1.9788 -1.5580 6 7 2.2384 -2.3725 -2.6905 7 6 2.9438 -1.4946 -3.3338 8 7 3.5980 -1.7264 -4.5336 9 6 3.5199 -3.0446 -5.1678 10 1 3.2988 -3.8429 -4.4592 11 6 2.6343 -3.0741 -6.4247 12 6 3.8944 -2.7049 -7.2253 13 1 4.0553 -1.6308 -7.3179 14 6 4.0068 -3.4292 -8.5420 15 7 4.8407 -3.1366 -9.5022 16 6 4.6596 -3.9904 -10.5208 17 6 3.6758 -4.8440 -10.1789 18 7 3.2613 -4.4885 -8.9238 19 6 4.7081 -3.3542 -6.0935 20 16 2.9553 -0.0121 -2.4824 21 1 -0.3933 0.4418 -0.7650 22 1 1.7924 -0.5138 0.8900 23 1 1.5615 2.4679 1.2085 24 1 3.5346 1.7703 -0.0321 25 1 1.0780 -2.6318 -0.9469 26 1 4.1075 -1.0156 -4.9533 27 1 1.8671 -2.2999 -6.4365 28 1 2.2422 -4.0636 -6.6595 29 1 5.2064 -3.9922 -11.4521 30 1 3.2887 -5.6540 -10.7794 31 1 2.5630 -4.9176 -8.4051 32 1 4.8830 -4.4204 -6.2378 33 1 5.6158 -2.8071 -5.8389 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16969812_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:10:39 Heat of formation + Delta-G solvation = 112.733575 kcal Electronic energy + Delta-G solvation = -18555.121159 eV Core-core repulsion = 15518.459266 eV Total energy + Delta-G solvation = -3036.661892 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.10563 -41.01404 -40.00508 -37.86027 -35.29587 -33.42411 -31.39059 -30.48166 -27.07036 -26.88655 -26.16219 -24.48911 -22.72211 -21.88486 -21.34322 -20.35888 -19.60086 -19.03898 -18.07430 -17.06398 -16.79143 -16.46192 -16.16378 -15.82234 -15.64435 -15.40639 -15.26138 -14.91021 -14.60002 -14.55822 -14.00741 -13.82758 -13.61482 -12.92079 -12.57913 -12.35913 -12.16933 -12.03950 -11.65034 -11.22878 -10.97446 -10.96473 -10.79673 -10.29112 -10.17536 -9.35014 -8.81181 -5.14470 -0.06932 -0.01815 0.66118 1.06851 1.24575 1.57248 1.89671 1.97805 1.99805 2.13226 2.18295 3.14471 3.26192 3.41200 3.45108 3.57823 3.65350 3.89890 3.98823 4.10607 4.38630 4.42745 4.46508 4.47469 4.56076 4.64885 4.71412 4.73012 4.81250 4.90581 5.12256 5.18051 5.77553 5.79915 5.97652 6.36220 6.50658 6.96059 7.14792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.655 3.345 4 C -0.306 4.306 5 C 0.118 3.882 6 N -0.549 5.549 7 C 0.326 3.674 8 N -0.675 5.675 9 C 0.142 3.858 10 H 0.111 0.889 11 C -0.150 4.150 12 C -0.026 4.026 13 H 0.118 0.882 14 C 0.217 3.783 15 N -0.487 5.487 16 C -0.027 4.027 17 C -0.056 4.056 18 N -0.565 5.565 19 C -0.134 4.134 20 S 0.094 5.906 21 H 0.380 0.620 22 H 0.122 0.878 23 H -0.235 1.235 24 H -0.240 1.240 25 H 0.176 0.824 26 H 0.416 0.584 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.171 0.829 30 H 0.178 0.822 31 H 0.418 0.582 32 H 0.098 0.902 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -0.075 -1.739 2.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.125 4.125 3 Si 0.555 3.445 4 C -0.429 4.429 5 C -0.032 4.032 6 N -0.274 5.274 7 C -0.044 4.044 8 N -0.314 5.314 9 C 0.033 3.967 10 H 0.129 0.871 11 C -0.190 4.190 12 C -0.046 4.046 13 H 0.136 0.864 14 C -0.047 4.047 15 N -0.207 5.207 16 C -0.175 4.175 17 C -0.189 4.189 18 N -0.169 5.169 19 C -0.173 4.173 20 S 0.343 5.657 21 H 0.227 0.773 22 H 0.139 0.861 23 H -0.159 1.159 24 H -0.165 1.165 25 H 0.193 0.807 26 H 0.254 0.746 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.188 0.812 30 H 0.195 0.805 31 H 0.256 0.744 32 H 0.117 0.883 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.066 1.151 -1.242 1.694 hybrid contribution -1.144 -1.912 0.331 2.252 sum -1.078 -0.762 -0.911 1.604 Atomic orbital electron populations 1.86515 1.16882 1.81670 1.49146 1.24117 0.84836 1.08899 0.94619 0.94982 0.82035 0.78032 0.89437 1.25611 1.13018 0.99369 1.04879 1.21322 0.97144 0.93020 0.91760 1.66481 1.16921 1.33550 1.10434 1.23695 0.95029 0.93664 0.92047 1.43666 1.54420 1.13955 1.19397 1.21789 0.95931 0.85282 0.93680 0.87069 1.23559 0.96954 1.02755 0.95722 1.21078 0.97630 0.99811 0.86048 0.86356 1.22926 0.93210 0.90775 0.97756 1.70247 1.22979 1.26584 1.00849 1.22421 1.00196 0.95290 0.99612 1.22828 1.02966 1.05189 0.87952 1.43263 1.31480 1.26740 1.15404 1.23438 0.97865 1.02532 0.93480 1.84033 1.51070 1.13684 1.16895 0.77255 0.86121 1.15881 1.16462 0.80681 0.74557 0.89757 0.89464 0.81167 0.80458 0.74388 0.88332 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.06 12.87 -35.23 -0.45 -0.39 16 2 C -0.01 0.00 2.99 36.01 0.11 0.11 16 3 Si 0.66 -0.60 31.05 -169.99 -5.28 -5.88 16 4 C -0.31 -0.08 5.74 -36.02 -0.21 -0.28 16 5 C 0.12 0.16 11.22 -19.14 -0.21 -0.06 16 6 N -0.55 -1.15 9.83 -15.21 -0.15 -1.30 16 7 C 0.33 0.14 8.09 -87.67 -0.71 -0.57 16 8 N -0.68 1.19 5.42 -54.99 -0.30 0.90 16 9 C 0.14 -0.30 4.44 -67.12 -0.30 -0.60 16 10 H 0.11 -0.08 7.66 -51.93 -0.40 -0.48 16 11 C -0.15 0.41 7.36 -25.91 -0.19 0.22 16 12 C -0.03 0.04 4.17 -90.96 -0.38 -0.34 16 13 H 0.12 -0.23 8.14 -51.93 -0.42 -0.65 16 14 C 0.22 0.21 7.36 -155.42 -1.14 -0.93 16 15 N -0.49 -1.87 11.25 -10.82 -0.12 -1.99 16 16 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 17 C -0.06 0.01 12.04 -16.56 -0.20 -0.19 16 18 N -0.57 0.50 5.94 -10.23 -0.06 0.44 16 19 C -0.13 0.32 7.38 -25.92 -0.19 0.13 16 20 S 0.09 -0.05 20.57 -107.50 -2.21 -2.26 16 21 H 0.38 -1.41 8.70 45.56 0.40 -1.01 16 22 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 23 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16 24 H -0.24 -0.31 7.11 56.52 0.40 0.09 16 25 H 0.18 0.05 8.06 -52.49 -0.42 -0.37 16 26 H 0.42 -1.51 8.83 -40.82 -0.36 -1.87 16 27 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.09 -0.33 6.64 -51.93 -0.34 -0.68 16 29 H 0.17 0.03 8.06 -52.49 -0.42 -0.40 16 30 H 0.18 -0.58 8.06 -52.48 -0.42 -1.00 16 31 H 0.42 -1.54 7.53 -40.82 -0.31 -1.85 16 32 H 0.10 -0.22 8.09 -51.93 -0.42 -0.64 16 33 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 LS Contribution 297.81 15.07 4.49 4.49 Total: 0.00 -8.02 297.81 -11.30 -19.32 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: -3.58 Total: -10.55 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.64 Total: -2.77 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -0.63 Total: -1.96 kcal Atomic # 8 Polarization: 0.06 SS G_CDS: -0.45 Total: -0.39 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: -5.28 Total: -5.88 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.21 Total: -2.26 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -8.02 -11.30 -19.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969812_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.058 kcal (2) G-P(sol) polarization free energy of solvation -8.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds