Wall clock time and date at job start Mon Mar 8 2021 08:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86292 * 109.47088 * 2 1 4 4 C 1.50699 * 109.46963 * 240.00186 * 2 1 3 5 5 C 1.33330 * 125.95026 * 299.99624 * 4 2 1 6 6 N 1.32118 * 114.58253 * 180.02562 * 5 4 2 7 7 C 1.29696 * 116.86199 * 0.02562 * 6 5 4 8 8 N 1.38610 * 124.94589 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00242 * 0.02562 * 8 7 6 10 10 H 1.09005 * 112.85438 * 336.20084 * 9 8 7 11 11 C 1.53785 * 113.68970 * 107.46707 * 9 8 7 12 12 C 1.53786 * 87.08000 * 89.13033 * 11 9 8 13 13 H 1.09002 * 113.68875 * 270.87677 * 12 11 9 14 14 C 1.50692 * 113.61400 * 139.98289 * 12 11 9 15 15 N 1.30501 * 125.64779 * 167.52662 * 14 12 11 16 16 C 1.34134 * 109.25535 * 179.97438 * 15 14 12 17 17 C 1.34668 * 108.01972 * 0.02562 * 16 15 14 18 18 N 1.35044 * 125.65329 * 347.52646 * 14 12 11 19 19 C 1.53780 * 87.08122 * 25.43011 * 12 11 9 20 20 S 1.70964 * 110.10099 * 0.24226 * 7 6 5 21 21 H 0.96699 * 113.99826 * 59.99472 * 1 2 3 22 22 H 1.09001 * 109.47121 * 120.00056 * 2 1 3 23 23 H 1.48506 * 110.00284 * 59.99813 * 3 2 1 24 24 H 1.48498 * 110.00245 * 181.31873 * 3 2 1 25 25 H 1.08001 * 122.70910 * 0.02562 * 5 4 2 26 26 H 0.97001 * 119.99698 * 180.02562 * 8 7 6 27 27 H 1.08993 * 113.61302 * 334.58047 * 11 9 8 28 28 H 1.08998 * 113.61656 * 203.67609 * 11 9 8 29 29 H 1.08001 * 125.98356 * 179.97438 * 16 15 14 30 30 H 1.08003 * 126.59021 * 180.02562 * 17 16 15 31 31 H 0.96995 * 126.39482 * 359.97438 * 18 14 12 32 32 H 1.09002 * 113.60946 * 89.11931 * 19 12 11 33 33 H 1.08995 * 113.61810 * 219.93458 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6835 -1.9788 -1.5580 6 7 2.2384 -2.3725 -2.6905 7 6 2.9438 -1.4946 -3.3338 8 7 3.5980 -1.7264 -4.5336 9 6 3.5199 -3.0446 -5.1678 10 1 3.2988 -3.8429 -4.4592 11 6 2.6343 -3.0741 -6.4247 12 6 3.8944 -2.7049 -7.2253 13 1 4.0553 -1.6308 -7.3179 14 6 4.0068 -3.4292 -8.5420 15 7 4.8407 -3.1366 -9.5022 16 6 4.6596 -3.9904 -10.5208 17 6 3.6758 -4.8440 -10.1789 18 7 3.2613 -4.4885 -8.9238 19 6 4.7081 -3.3542 -6.0935 20 16 2.9553 -0.0121 -2.4824 21 1 -0.3933 0.4418 -0.7650 22 1 1.7924 -0.5138 0.8900 23 1 1.5615 2.4679 1.2085 24 1 3.5346 1.7703 -0.0321 25 1 1.0780 -2.6318 -0.9469 26 1 4.1075 -1.0156 -4.9533 27 1 1.8671 -2.2999 -6.4365 28 1 2.2422 -4.0636 -6.6595 29 1 5.2064 -3.9922 -11.4521 30 1 3.2887 -5.6540 -10.7794 31 1 2.5630 -4.9176 -8.4051 32 1 4.8830 -4.4204 -6.2378 33 1 5.6158 -2.8071 -5.8389 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16969812_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:10:38 Heat of formation + Delta-G solvation = 113.214758 kcal Electronic energy + Delta-G solvation = -18555.100293 eV Core-core repulsion = 15518.459266 eV Total energy + Delta-G solvation = -3036.641027 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.09131 -40.96949 -39.93266 -37.82384 -35.22009 -33.44790 -31.37635 -30.45720 -26.97944 -26.76067 -26.11267 -24.46390 -22.69531 -21.88246 -21.30565 -20.30239 -19.52926 -18.97071 -18.03674 -17.00666 -16.68167 -16.44067 -16.13626 -15.81285 -15.58537 -15.34454 -15.23601 -14.91641 -14.57386 -14.49123 -14.04045 -13.69127 -13.45580 -12.89707 -12.49010 -12.43285 -12.04587 -11.99980 -11.51017 -11.15221 -11.04343 -11.00982 -10.79140 -10.29056 -10.15988 -9.35005 -8.75953 -5.10350 -0.06411 0.00897 0.66920 1.09558 1.27569 1.58205 1.89136 1.97030 2.09181 2.12098 2.24451 3.28044 3.38133 3.51138 3.59434 3.66167 3.79936 3.93429 4.12349 4.24625 4.48922 4.53018 4.55249 4.61415 4.65252 4.71881 4.75624 4.89289 4.96452 4.99362 5.13105 5.24484 5.78837 5.84710 6.13443 6.48967 6.73544 6.99450 7.13377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.012 4.012 3 Si 0.728 3.272 4 C -0.308 4.308 5 C 0.104 3.896 6 N -0.574 5.574 7 C 0.318 3.682 8 N -0.668 5.668 9 C 0.144 3.856 10 H 0.100 0.900 11 C -0.139 4.139 12 C -0.024 4.024 13 H 0.119 0.881 14 C 0.210 3.790 15 N -0.533 5.533 16 C -0.064 4.064 17 C -0.044 4.044 18 N -0.557 5.557 19 C -0.125 4.125 20 S 0.117 5.883 21 H 0.395 0.605 22 H 0.118 0.882 23 H -0.273 1.273 24 H -0.268 1.268 25 H 0.178 0.822 26 H 0.425 0.575 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.177 0.823 30 H 0.209 0.791 31 H 0.431 0.569 32 H 0.099 0.901 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 -0.328 -2.048 2.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.126 4.126 3 Si 0.632 3.368 4 C -0.431 4.431 5 C -0.046 4.046 6 N -0.300 5.300 7 C -0.053 4.053 8 N -0.308 5.308 9 C 0.035 3.965 10 H 0.118 0.882 11 C -0.179 4.179 12 C -0.044 4.044 13 H 0.137 0.863 14 C -0.054 4.054 15 N -0.253 5.253 16 C -0.211 4.211 17 C -0.179 4.179 18 N -0.162 5.162 19 C -0.164 4.164 20 S 0.366 5.634 21 H 0.245 0.755 22 H 0.136 0.864 23 H -0.199 1.199 24 H -0.194 1.194 25 H 0.195 0.805 26 H 0.265 0.735 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.194 0.806 30 H 0.225 0.775 31 H 0.272 0.728 32 H 0.117 0.883 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.452 0.889 -1.578 1.867 hybrid contribution -0.977 -1.839 0.426 2.125 sum -1.429 -0.950 -1.153 2.067 Atomic orbital electron populations 1.86480 1.16908 1.82088 1.50303 1.24196 0.84924 1.09167 0.94314 0.94125 0.79192 0.76042 0.87456 1.25706 1.12974 0.99275 1.05195 1.21433 0.97658 0.93579 0.91958 1.66479 1.17939 1.34507 1.11071 1.23887 0.94929 0.93967 0.92497 1.43727 1.53912 1.14396 1.18754 1.21729 0.96376 0.84841 0.93511 0.88183 1.23517 0.96318 1.03366 0.94652 1.21135 0.98449 0.99682 0.85145 0.86305 1.23283 0.92932 0.91209 0.98012 1.70180 1.24770 1.28167 1.02184 1.22744 1.01869 0.96373 1.00107 1.23281 1.01710 1.04882 0.88006 1.43270 1.31393 1.26200 1.15338 1.23373 0.97724 1.02520 0.92824 1.83902 1.50546 1.12772 1.16145 0.75486 0.86436 1.19868 1.19435 0.80477 0.73505 0.90099 0.88143 0.80614 0.77463 0.72756 0.88271 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.23 12.87 -148.98 -1.92 -1.69 16 2 C -0.01 0.01 2.99 71.24 0.21 0.22 16 3 Si 0.73 -1.27 31.05 68.60 2.13 0.86 16 4 C -0.31 -0.17 5.74 24.58 0.14 -0.03 16 5 C 0.10 0.32 11.22 83.54 0.94 1.25 16 6 N -0.57 -2.57 9.83 -202.02 -1.99 -4.56 16 7 C 0.32 0.25 8.09 179.32 1.45 1.70 16 8 N -0.67 2.50 5.42 -327.89 -1.78 0.72 16 9 C 0.14 -0.63 4.44 45.52 0.20 -0.43 16 10 H 0.10 -0.14 7.66 -2.38 -0.02 -0.16 16 11 C -0.14 0.84 7.36 31.12 0.23 1.07 16 12 C -0.02 0.09 4.17 -11.01 -0.05 0.04 16 13 H 0.12 -0.45 8.14 -2.39 -0.02 -0.47 16 14 C 0.21 0.43 7.36 138.12 1.02 1.44 16 15 N -0.53 -4.55 11.25 -188.13 -2.12 -6.67 16 16 C -0.06 -0.30 11.87 83.52 0.99 0.69 16 17 C -0.04 0.05 12.04 83.09 1.00 1.05 16 18 N -0.56 1.39 5.94 -186.28 -1.11 0.28 16 19 C -0.12 0.62 7.38 31.12 0.23 0.85 16 20 S 0.12 -0.16 20.57 -56.49 -1.16 -1.33 16 21 H 0.40 -3.14 8.70 -74.06 -0.64 -3.78 16 22 H 0.12 -0.03 7.96 -2.39 -0.02 -0.05 16 23 H -0.27 -1.21 7.11 99.48 0.71 -0.50 16 24 H -0.27 -0.77 7.11 99.48 0.71 -0.06 16 25 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 26 H 0.43 -3.24 8.83 -92.71 -0.82 -4.06 16 27 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.10 -0.88 6.64 -2.39 -0.02 -0.90 16 29 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 30 H 0.21 -1.72 8.06 -2.91 -0.02 -1.75 16 31 H 0.43 -3.73 7.53 -92.71 -0.70 -4.43 16 32 H 0.10 -0.47 8.09 -2.39 -0.02 -0.49 16 33 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 Total: 0.00 -19.02 297.81 -2.52 -21.54 By element: Atomic # 1 Polarization: -16.08 SS G_CDS: -0.95 Total: -17.03 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.36 Total: 7.86 kcal Atomic # 7 Polarization: -3.23 SS G_CDS: -6.99 Total: -10.22 kcal Atomic # 8 Polarization: 0.23 SS G_CDS: -1.92 Total: -1.69 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.13 Total: 0.86 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -1.16 Total: -1.33 kcal Total: -19.02 -2.52 -21.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969812_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.756 kcal (2) G-P(sol) polarization free energy of solvation -19.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds