Wall clock time and date at job start Mon Mar 8 2021 08:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33323 * 125.94945 * 2 1 4 4 C 1.50697 * 122.71421 * 359.96358 * 3 2 1 5 5 O 1.42895 * 109.47544 * 113.28415 * 4 3 2 6 6 Si 1.86303 * 109.46909 * 233.28384 * 4 3 2 7 7 N 1.32129 * 114.57863 * 179.69463 * 3 2 1 8 8 C 1.29689 * 116.86251 * 0.27033 * 7 3 2 9 9 N 1.38602 * 124.94805 * 179.97438 * 8 7 3 10 10 C 1.46508 * 120.00126 * 179.97438 * 9 8 7 11 11 H 1.08997 * 112.84798 * 336.19671 * 10 9 8 12 12 C 1.53780 * 113.61390 * 107.50274 * 10 9 8 13 13 C 1.53781 * 87.08103 * 89.11456 * 12 10 9 14 14 H 1.08992 * 113.62113 * 270.88378 * 13 12 10 15 15 C 1.50703 * 113.61323 * 139.97768 * 13 12 10 16 16 N 1.30493 * 125.65160 * 167.19678 * 15 13 12 17 17 C 1.34130 * 109.25902 * 179.89746 * 16 15 13 18 18 C 1.34665 * 108.01914 * 0.36933 * 17 16 15 19 19 N 1.35047 * 125.64843 * 347.51026 * 15 13 12 20 20 C 1.53780 * 113.61598 * 205.00282 * 10 9 8 21 21 S 1.70971 * 110.10390 * 359.97438 * 8 7 3 22 22 H 1.08997 * 109.47056 * 84.91527 * 1 2 3 23 23 H 1.08991 * 109.47083 * 204.91765 * 1 2 3 24 24 H 1.09000 * 109.47050 * 324.91565 * 1 2 3 25 25 H 1.09003 * 109.47148 * 353.27942 * 4 3 2 26 26 H 0.96696 * 114.00169 * 179.97438 * 5 4 3 27 27 H 1.48500 * 109.99995 * 299.99554 * 6 4 3 28 28 H 1.48500 * 110.00189 * 61.31815 * 6 4 3 29 29 H 0.96999 * 120.00463 * 359.97438 * 9 8 7 30 30 H 1.08992 * 113.61588 * 203.66851 * 12 10 9 31 31 H 1.09000 * 113.61113 * 334.56892 * 12 10 9 32 32 H 1.08002 * 125.99154 * 180.11534 * 17 16 15 33 33 H 1.08002 * 126.59129 * 179.81306 * 18 17 16 34 34 H 0.97002 * 126.40025 * 359.93732 * 19 15 13 35 35 H 1.09002 * 113.61823 * 25.42941 * 20 10 9 36 36 H 1.08992 * 113.61794 * 156.33681 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0008 5 8 2.0635 3.1210 1.2366 6 14 2.4944 3.4429 -1.4088 7 7 3.5851 0.8188 0.0064 8 6 3.9315 -0.4310 0.0064 9 7 5.2384 -0.8926 0.0120 10 6 5.5065 -2.3330 0.0119 11 1 4.6786 -2.9176 0.4129 12 6 6.0421 -2.8597 -1.3299 13 6 7.4513 -2.5434 -0.8018 14 1 7.7836 -1.5294 -1.0241 15 6 8.4777 -3.5881 -1.1571 16 7 9.7706 -3.4545 -1.0412 17 6 10.3703 -4.5833 -1.4478 18 6 9.4129 -5.4463 -1.8379 19 7 8.2121 -4.8155 -1.6538 20 6 6.8719 -2.7055 0.6134 21 16 2.5413 -1.4261 -0.0017 22 1 -0.3633 0.0911 -1.0236 23 1 -0.3633 -0.9319 0.4329 24 1 -0.3633 0.8409 0.5907 25 1 0.6586 2.4500 -0.1216 26 1 1.7412 4.0300 1.3060 27 1 3.9706 3.4952 -1.2558 28 1 2.1402 2.8077 -2.7035 29 1 5.9755 -0.2622 0.0160 30 1 5.8623 -3.9235 -1.4845 31 1 5.7498 -2.2513 -2.1858 32 1 11.4345 -4.7664 -1.4638 33 1 9.5636 -6.4445 -2.2218 34 1 7.3343 -5.1819 -1.8441 35 1 7.2496 -1.9726 1.3264 36 1 6.9190 -3.7271 0.9902 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16969812_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:10:41 Heat of formation + Delta-G solvation = 107.331162 kcal Electronic energy + Delta-G solvation = -20513.338981 eV Core-core repulsion = 17320.905204 eV Total energy + Delta-G solvation = -3192.433778 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.15695 -41.20540 -40.33602 -37.57392 -35.62219 -33.52405 -32.95815 -30.63831 -29.08532 -26.95980 -26.40924 -25.66377 -24.42525 -22.74811 -21.93591 -20.97319 -20.22486 -19.28566 -18.90332 -18.34704 -17.57225 -16.78767 -16.39366 -16.21707 -15.72881 -15.64131 -15.34798 -15.33346 -14.68983 -14.58812 -14.31213 -14.25515 -14.07280 -13.65279 -13.58636 -13.52781 -13.04461 -12.56708 -12.35953 -12.15344 -11.91305 -11.63428 -11.15514 -11.08956 -11.06289 -10.73868 -10.41256 -10.12127 -9.40515 -8.78769 -5.05337 -0.16913 0.02788 0.58751 1.03750 1.22778 1.57576 1.71915 1.78686 2.06783 2.13665 2.15794 3.13247 3.25980 3.37015 3.43183 3.63051 3.71500 3.96537 4.00208 4.14459 4.15519 4.27668 4.39376 4.48178 4.50108 4.54489 4.64219 4.71265 4.74610 4.82906 4.85943 4.88364 4.98593 5.09343 5.19341 5.56807 5.73783 6.14242 6.44807 6.80296 6.93526 7.08779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.255 4.255 3 C 0.078 3.922 4 C -0.039 4.039 5 O -0.560 6.560 6 Si 0.796 3.204 7 N -0.576 5.576 8 C 0.299 3.701 9 N -0.676 5.676 10 C 0.130 3.870 11 H 0.112 0.888 12 C -0.141 4.141 13 C -0.027 4.027 14 H 0.108 0.892 15 C 0.209 3.791 16 N -0.535 5.535 17 C -0.065 4.065 18 C -0.039 4.039 19 N -0.554 5.554 20 C -0.120 4.120 21 S 0.145 5.855 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.404 0.596 27 H -0.313 1.313 28 H -0.301 1.301 29 H 0.413 0.587 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.176 0.824 33 H 0.212 0.788 34 H 0.433 0.567 35 H 0.082 0.918 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 -3.618 -1.335 7.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.378 4.378 3 C -0.051 4.051 4 C -0.151 4.151 5 O -0.370 6.370 6 Si 0.703 3.297 7 N -0.303 5.303 8 C -0.072 4.072 9 N -0.315 5.315 10 C 0.024 3.976 11 H 0.130 0.870 12 C -0.181 4.181 13 C -0.047 4.047 14 H 0.126 0.874 15 C -0.055 4.055 16 N -0.255 5.255 17 C -0.212 4.212 18 C -0.174 4.174 19 N -0.160 5.160 20 C -0.159 4.159 21 S 0.394 5.606 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.128 0.872 26 H 0.256 0.744 27 H -0.242 1.242 28 H -0.229 1.229 29 H 0.251 0.749 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.194 0.806 33 H 0.229 0.771 34 H 0.274 0.726 35 H 0.101 0.899 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.971 -4.382 -1.593 6.815 hybrid contribution 0.045 -0.244 -0.269 0.366 sum -4.926 -4.626 -1.862 7.009 Atomic orbital electron populations 1.20339 0.84526 1.04398 1.03885 1.25652 1.02847 0.93278 1.16016 1.19435 0.86596 0.96359 1.02735 1.24369 1.03529 0.90552 0.96617 1.86476 1.82028 1.33289 1.35229 0.95295 0.77433 0.84529 0.72425 1.66118 1.18764 1.17985 1.27415 1.23614 0.92968 0.91699 0.98959 1.43741 1.01226 1.06977 1.79591 1.21989 0.99013 0.78994 0.97574 0.86974 1.23618 0.93053 1.03419 0.97965 1.21052 0.90042 0.95760 0.97855 0.87435 1.23122 0.92462 0.87696 1.02225 1.70173 1.05508 1.27187 1.22673 1.22755 1.01086 0.90952 1.06436 1.23304 0.84131 1.01751 1.08202 1.43230 1.10228 1.13246 1.49257 1.23357 0.92721 1.04233 0.95606 1.83550 0.94921 1.08863 1.73255 0.89457 0.90129 0.89118 0.87233 0.74445 1.24154 1.22933 0.74911 0.86529 0.90210 0.80630 0.77145 0.72565 0.89902 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.17 9.71 71.24 0.69 0.87 16 2 C -0.25 -1.21 6.57 24.58 0.16 -1.05 16 3 C 0.08 0.71 5.22 41.40 0.22 0.93 16 4 C -0.04 -0.12 2.82 71.24 0.20 0.08 16 5 O -0.56 -2.18 12.86 -148.98 -1.92 -4.10 16 6 Si 0.80 2.65 32.62 68.60 2.24 4.89 16 7 N -0.58 -7.30 9.77 -189.86 -1.85 -9.15 16 8 C 0.30 2.13 8.24 179.32 1.48 3.61 16 9 N -0.68 -1.31 5.42 -327.89 -1.78 -3.08 16 10 C 0.13 -0.54 4.31 45.52 0.20 -0.34 16 11 H 0.11 -0.68 7.06 -2.39 -0.02 -0.70 16 12 C -0.14 0.84 7.35 31.12 0.23 1.07 16 13 C -0.03 0.04 4.17 -11.01 -0.05 0.00 16 14 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 15 C 0.21 0.61 7.36 138.13 1.02 1.63 16 16 N -0.54 -5.28 11.25 -188.13 -2.12 -7.39 16 17 C -0.07 -0.35 11.87 83.52 0.99 0.64 16 18 C -0.04 0.05 12.04 83.08 1.00 1.05 16 19 N -0.55 1.56 5.94 -186.27 -1.11 0.46 16 20 C -0.12 0.48 7.38 31.12 0.23 0.71 16 21 S 0.15 0.35 21.69 -56.49 -1.23 -0.87 16 22 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 23 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H 0.09 -0.38 7.18 -2.39 -0.02 -0.40 16 25 H 0.11 -0.40 6.34 -2.39 -0.02 -0.42 16 26 H 0.40 -3.18 8.74 -74.06 -0.65 -3.83 16 27 H -0.31 -4.51 7.11 99.48 0.71 -3.81 16 28 H -0.30 -2.71 7.11 99.48 0.71 -2.00 16 29 H 0.41 1.00 8.82 -92.71 -0.82 0.18 16 30 H 0.12 -1.30 6.64 -2.39 -0.02 -1.32 16 31 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.21 -1.86 8.06 -2.91 -0.02 -1.88 16 34 H 0.43 -4.27 7.53 -92.71 -0.70 -4.97 16 35 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.11 -0.67 8.09 -2.39 -0.02 -0.69 16 Total: 0.00 -28.41 318.02 -2.37 -30.79 By element: Atomic # 1 Polarization: -19.73 SS G_CDS: -0.98 Total: -20.70 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 6.37 Total: 9.17 kcal Atomic # 7 Polarization: -12.32 SS G_CDS: -6.85 Total: -19.17 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: -1.92 Total: -4.10 kcal Atomic # 14 Polarization: 2.65 SS G_CDS: 2.24 Total: 4.89 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.23 Total: -0.87 kcal Total: -28.41 -2.37 -30.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969812_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.117 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds