Wall clock time and date at job start Mon Mar 8 2021 08:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50699 * 109.47249 * 239.99737 * 2 1 3 5 5 C 1.37986 * 120.32513 * 119.72246 * 4 2 1 6 6 N 1.32020 * 120.90211 * 179.75141 * 5 4 2 7 7 C 1.32339 * 121.64071 * 0.53569 * 6 5 4 8 8 N 1.39146 * 119.71344 * 179.70270 * 7 6 5 9 9 C 1.46493 * 120.00292 * 0.02786 * 8 7 6 10 10 H 1.09005 * 112.85001 * 336.19341 * 9 8 7 11 11 C 1.53779 * 113.61326 * 107.49764 * 9 8 7 12 12 C 1.53775 * 87.07967 * 89.12110 * 11 9 8 13 13 H 1.08999 * 113.61408 * 270.88137 * 12 11 9 14 14 C 1.50702 * 113.61799 * 139.98458 * 12 11 9 15 15 N 1.30500 * 125.65241 * 167.52613 * 14 12 11 16 16 C 1.34122 * 109.25489 * 179.97438 * 15 14 12 17 17 C 1.34669 * 108.02370 * 0.02562 * 16 15 14 18 18 N 1.35040 * 125.64866 * 347.21444 * 14 12 11 19 19 C 1.53774 * 87.08469 * 25.43131 * 12 11 9 20 20 C 1.39347 * 120.56502 * 359.73589 * 7 6 5 21 21 F 1.35095 * 120.46680 * 180.02562 * 20 7 6 22 22 C 1.38437 * 119.05790 * 359.97438 * 20 7 6 23 23 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 24 24 H 1.09004 * 109.47449 * 120.00278 * 2 1 3 25 25 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 26 26 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 27 27 H 1.08002 * 119.55054 * 0.02978 * 5 4 2 28 28 H 0.97000 * 119.99664 * 180.02562 * 8 7 6 29 29 H 1.09005 * 113.61374 * 203.66573 * 11 9 8 30 30 H 1.08992 * 113.61796 * 334.56472 * 11 9 8 31 31 H 1.08002 * 125.98797 * 179.97438 * 16 15 14 32 32 H 1.08007 * 126.59263 * 180.02562 * 17 16 15 33 33 H 0.97011 * 126.39575 * 0.02562 * 18 14 12 34 34 H 1.08999 * 113.61675 * 220.02032 * 19 12 11 35 35 H 1.08998 * 113.61699 * 89.11806 * 19 12 11 36 36 H 1.08003 * 120.75786 * 180.02562 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7203 -0.0447 -2.1460 6 7 3.1706 -0.6574 -3.2253 7 6 2.8780 -1.9230 -3.4781 8 7 3.3692 -2.5274 -4.6312 9 6 4.2069 -1.7632 -5.5588 10 1 4.0465 -0.6875 -5.4859 11 6 5.6895 -2.1704 -5.5282 12 6 5.3456 -3.2080 -6.6098 13 1 5.0336 -4.1716 -6.2070 14 6 6.3968 -3.3332 -7.6823 15 7 6.4643 -4.2837 -8.5740 16 6 7.5269 -4.0736 -9.3649 17 6 8.1416 -2.9505 -8.9472 18 7 7.4217 -2.4773 -7.8836 19 6 4.1718 -2.2949 -7.0013 20 6 2.0817 -2.6553 -2.5998 21 9 1.7846 -3.9473 -2.8597 22 6 1.6002 -2.0403 -1.4568 23 1 -0.3934 0.4417 -0.7651 24 1 1.7923 -0.5139 0.8900 25 1 1.5879 2.4585 -1.2243 26 1 1.5615 2.4679 1.2085 27 1 2.9767 0.9904 -1.9751 28 1 3.1570 -3.4547 -4.8208 29 1 6.3646 -1.3873 -5.8734 30 1 6.0014 -2.6127 -4.5822 31 1 7.8360 -4.6964 -10.1914 32 1 9.0290 -2.5058 -9.3731 33 1 7.6135 -1.6777 -7.3688 34 1 3.2585 -2.8378 -7.2445 35 1 4.4319 -1.5458 -7.7492 36 1 0.9810 -2.5822 -0.7572 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16969812_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:10:44 Heat of formation + Delta-G solvation = 62.096552 kcal Electronic energy + Delta-G solvation = -22318.779762 eV Core-core repulsion = 18721.315862 eV Total energy + Delta-G solvation = -3597.463901 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 291.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.95745 -43.09426 -41.48807 -40.10495 -38.02984 -35.46852 -33.46260 -33.19984 -31.54021 -30.29411 -26.90525 -26.75402 -26.03101 -24.70372 -23.01712 -22.52106 -21.73874 -20.49481 -19.58643 -19.00237 -18.41113 -18.18898 -17.56369 -17.02808 -16.57491 -16.22545 -16.03194 -16.01581 -15.56289 -15.43879 -15.23750 -14.89552 -14.53689 -14.48234 -14.30465 -14.01274 -13.66260 -13.45593 -13.38723 -12.66809 -12.42596 -12.07430 -12.04754 -11.48377 -11.23410 -11.04219 -11.01647 -10.78320 -10.64196 -10.52684 -9.34925 -8.79315 -4.87982 -0.08307 0.09780 1.09475 1.32954 1.64489 1.89837 2.01716 2.11783 2.22512 2.52972 3.01930 3.21895 3.34392 3.41193 3.44501 3.60339 3.63165 3.81454 3.86252 3.97592 4.11125 4.25352 4.44135 4.52634 4.54264 4.60309 4.62981 4.65973 4.74617 4.82529 4.91267 4.97223 4.99302 5.07314 5.16748 5.43184 5.78635 5.97677 6.16278 6.49988 6.51121 6.93302 7.13812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.069 4.069 3 Si 0.768 3.232 4 C -0.202 4.202 5 C 0.148 3.852 6 N -0.521 5.521 7 C 0.385 3.615 8 N -0.698 5.698 9 C 0.142 3.858 10 H 0.113 0.887 11 C -0.137 4.137 12 C -0.028 4.028 13 H 0.110 0.890 14 C 0.210 3.790 15 N -0.536 5.536 16 C -0.066 4.066 17 C -0.042 4.042 18 N -0.555 5.555 19 C -0.128 4.128 20 C -0.037 4.037 21 F -0.142 7.142 22 C -0.041 4.041 23 H 0.387 0.613 24 H 0.128 0.872 25 H -0.275 1.275 26 H -0.303 1.303 27 H 0.185 0.815 28 H 0.416 0.584 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.176 0.824 32 H 0.211 0.789 33 H 0.433 0.567 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 5.136 0.779 6.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.179 4.179 3 Si 0.672 3.328 4 C -0.207 4.207 5 C -0.009 4.009 6 N -0.238 5.238 7 C 0.147 3.853 8 N -0.331 5.331 9 C 0.036 3.964 10 H 0.131 0.869 11 C -0.177 4.177 12 C -0.048 4.048 13 H 0.128 0.872 14 C -0.054 4.054 15 N -0.256 5.256 16 C -0.213 4.213 17 C -0.177 4.177 18 N -0.160 5.160 19 C -0.167 4.167 20 C -0.063 4.063 21 F -0.121 7.121 22 C -0.067 4.067 23 H 0.236 0.764 24 H 0.146 0.854 25 H -0.201 1.201 26 H -0.231 1.231 27 H 0.202 0.798 28 H 0.254 0.746 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.193 0.807 32 H 0.227 0.773 33 H 0.274 0.726 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.172 5.460 0.468 6.888 hybrid contribution -1.145 -0.713 0.031 1.349 sum 3.028 4.747 0.499 5.652 Atomic orbital electron populations 1.86586 1.18577 1.80354 1.50236 1.25067 0.83312 1.11745 0.97736 0.94195 0.90068 0.71593 0.76916 1.20917 1.04573 0.94661 1.00581 1.22720 0.90995 0.99971 0.87183 1.67353 1.26756 1.07222 1.22422 1.18511 0.90091 0.89293 0.87397 1.44288 1.54015 1.14637 1.20112 1.21715 0.89541 0.97306 0.87829 0.86880 1.23517 0.97654 0.98029 0.98461 1.21114 0.91957 1.00262 0.91458 0.87243 1.23238 0.93314 0.89179 0.99679 1.70175 1.22038 1.25960 1.07464 1.22744 0.95365 0.99823 1.03325 1.23291 1.01808 0.99170 0.93390 1.43244 1.22266 1.23704 1.26780 1.23384 0.97955 0.98879 0.96464 1.18152 1.07794 0.80835 0.99539 1.91472 1.92364 1.34145 1.94097 1.21430 0.96045 0.94814 0.94446 0.76399 0.85385 1.20150 1.23121 0.79850 0.74616 0.87591 0.90389 0.80672 0.77266 0.72609 0.90252 0.87932 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.06 12.78 -148.98 -1.90 -1.84 16 2 C -0.07 0.26 2.84 71.24 0.20 0.46 16 3 Si 0.77 -4.18 29.82 68.60 2.05 -2.13 16 4 C -0.20 0.47 5.40 -19.76 -0.11 0.37 16 5 C 0.15 -0.40 9.84 84.60 0.83 0.43 16 6 N -0.52 -0.30 9.13 -193.02 -1.76 -2.06 16 7 C 0.39 0.58 7.49 133.08 1.00 1.57 16 8 N -0.70 1.03 5.41 -321.79 -1.74 -0.71 16 9 C 0.14 -0.59 4.35 45.52 0.20 -0.39 16 10 H 0.11 -0.40 7.41 -2.38 -0.02 -0.42 16 11 C -0.14 0.79 7.36 31.12 0.23 1.02 16 12 C -0.03 0.05 4.17 -11.02 -0.05 0.01 16 13 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 14 C 0.21 0.63 7.36 138.13 1.02 1.65 16 15 N -0.54 -5.22 11.25 -188.13 -2.12 -7.34 16 16 C -0.07 -0.36 11.87 83.52 0.99 0.64 16 17 C -0.04 0.04 12.04 83.09 1.00 1.04 16 18 N -0.55 1.31 5.94 -186.27 -1.11 0.21 16 19 C -0.13 0.48 7.38 31.12 0.23 0.71 16 20 C -0.04 -0.10 7.35 22.58 0.17 0.07 16 21 F -0.14 -0.66 16.65 44.97 0.75 0.09 16 22 C -0.04 -0.02 9.75 22.48 0.22 0.20 16 23 H 0.39 -2.15 8.70 -74.06 -0.64 -2.79 16 24 H 0.13 -0.69 7.96 -2.38 -0.02 -0.71 16 25 H -0.28 0.60 7.11 99.48 0.71 1.31 16 26 H -0.30 -0.91 7.11 99.48 0.71 -0.20 16 27 H 0.19 -1.44 4.88 -2.91 -0.01 -1.46 16 28 H 0.42 -0.97 8.17 -92.71 -0.76 -1.73 16 29 H 0.11 -1.02 6.64 -2.38 -0.02 -1.04 16 30 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 32 H 0.21 -1.77 8.06 -2.91 -0.02 -1.80 16 33 H 0.43 -3.92 7.53 -92.70 -0.70 -4.62 16 34 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.10 -0.46 8.09 -2.39 -0.02 -0.48 16 36 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 Total: 0.00 -19.54 310.35 -0.81 -20.35 By element: Atomic # 1 Polarization: -13.44 SS G_CDS: -0.90 Total: -14.34 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.93 Total: 7.78 kcal Atomic # 7 Polarization: -3.17 SS G_CDS: -6.73 Total: -9.90 kcal Atomic # 8 Polarization: 0.06 SS G_CDS: -1.90 Total: -1.84 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.75 Total: 0.09 kcal Atomic # 14 Polarization: -4.18 SS G_CDS: 2.05 Total: -2.13 kcal Total: -19.54 -0.81 -20.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16969812_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.450 kcal (2) G-P(sol) polarization free energy of solvation -19.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds