Wall clock time and date at job start Mon Mar 8 2021 08:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33333 * 125.95132 * 2 1 4 4 C 1.50701 * 122.70874 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47521 * 329.99929 * 4 3 2 6 6 Si 1.86302 * 109.47160 * 209.99680 * 4 3 2 7 7 N 1.32123 * 114.57838 * 180.02562 * 3 2 1 8 8 C 1.29688 * 116.86409 * 0.02562 * 7 3 2 9 9 N 1.38615 * 124.94424 * 179.97438 * 8 7 3 10 10 C 1.46496 * 120.00055 * 0.02562 * 9 8 7 11 11 C 1.46506 * 119.99522 * 179.97438 * 9 8 7 12 12 H 1.08988 * 112.90884 * 354.61563 * 11 9 8 13 13 C 1.53777 * 113.61142 * 125.86838 * 11 9 8 14 14 C 1.53776 * 87.17480 * 139.93652 * 13 11 9 15 15 H 1.08999 * 113.61876 * 220.05972 * 14 13 11 16 16 O 1.42901 * 113.61286 * 89.15544 * 14 13 11 17 17 C 1.53776 * 113.61129 * 223.36238 * 11 9 8 18 18 S 1.70959 * 110.10390 * 0.24565 * 8 7 3 19 19 H 1.09005 * 109.47417 * 89.99703 * 1 2 3 20 20 H 1.08997 * 109.47549 * 210.00134 * 1 2 3 21 21 H 1.09003 * 109.47237 * 330.00554 * 1 2 3 22 22 H 1.09001 * 109.47199 * 89.99932 * 4 3 2 23 23 H 0.96694 * 113.99997 * 300.00144 * 5 4 3 24 24 H 1.48500 * 110.00179 * 180.02562 * 6 4 3 25 25 H 1.48504 * 109.99754 * 301.32617 * 6 4 3 26 26 H 1.08997 * 109.46951 * 272.24051 * 10 9 8 27 27 H 1.08997 * 109.47226 * 32.24053 * 10 9 8 28 28 H 1.09007 * 109.47135 * 152.23921 * 10 9 8 29 29 H 1.09001 * 113.61716 * 254.52963 * 13 11 9 30 30 H 1.09004 * 113.61678 * 25.34526 * 13 11 9 31 31 H 0.96705 * 113.99639 * 180.02562 * 16 14 13 32 32 H 1.09000 * 113.61915 * 334.57262 * 17 11 9 33 33 H 1.09006 * 113.61664 * 105.38731 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4816 2.5020 -0.6746 6 14 2.9326 3.6148 -0.8786 7 7 3.5851 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0015 9 7 5.2385 -0.8926 -0.0027 10 6 6.3517 0.0597 -0.0024 11 6 5.5065 -2.3329 -0.0032 12 1 4.6016 -2.9329 0.0917 13 6 6.4299 -2.7872 -1.1458 14 6 7.0986 -3.7278 -0.1295 15 1 8.1826 -3.7807 -0.2310 16 8 6.4838 -5.0153 -0.0505 17 6 6.6271 -2.7512 0.9633 18 16 2.5413 -1.4260 -0.0087 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6088 2.8217 1.0270 23 1 0.5241 2.2120 -1.5961 24 1 2.4036 5.0024 -0.8855 25 1 4.2561 3.5795 -0.2060 26 1 6.6010 0.3275 -1.0291 27 1 6.0630 0.9559 0.5469 28 1 7.2192 -0.3956 0.4754 29 1 5.9081 -3.3103 -1.9472 30 1 7.0896 -2.0010 -1.5130 31 1 6.8998 -5.6113 0.5874 32 1 7.3418 -1.9555 1.1738 33 1 6.2644 -3.2439 1.8655 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16977506_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:52:43 Heat of formation + Delta-G solvation = 9.602598 kcal Electronic energy + Delta-G solvation = -17473.579362 eV Core-core repulsion = 14629.293427 eV Total energy + Delta-G solvation = -2844.285936 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28657 -40.63694 -37.99813 -36.95721 -34.78470 -32.57524 -29.51591 -28.47272 -26.99597 -25.89207 -25.20986 -23.00591 -20.74682 -20.08486 -19.51350 -18.24558 -17.82451 -17.34280 -16.76108 -16.65768 -15.95322 -15.68152 -15.52771 -14.83861 -14.43521 -14.08710 -13.96720 -13.83940 -13.64938 -13.50373 -13.30828 -13.12205 -13.08606 -12.60412 -12.32163 -12.18651 -11.81219 -11.51466 -11.04726 -10.77480 -10.42583 -10.21819 -9.91839 -8.43159 -4.81853 0.09013 0.22771 0.87101 1.43032 1.75325 1.91545 1.99177 2.27925 2.84327 3.24746 3.33098 3.43533 3.54671 3.60599 3.80963 4.03064 4.22698 4.28239 4.40692 4.47143 4.50965 4.56064 4.59381 4.71226 4.75610 4.81624 4.83048 4.94708 4.97497 5.19679 5.36984 5.70216 6.04744 6.49200 6.53644 7.01959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.238 4.238 3 C 0.065 3.935 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.716 3.284 7 N -0.543 5.543 8 C 0.320 3.680 9 N -0.573 5.573 10 C 0.097 3.903 11 C 0.136 3.864 12 H 0.114 0.886 13 C -0.144 4.144 14 C 0.083 3.917 15 H 0.079 0.921 16 O -0.550 6.550 17 C -0.184 4.184 18 S 0.093 5.907 19 H 0.071 0.929 20 H 0.058 0.942 21 H 0.091 0.909 22 H 0.119 0.881 23 H 0.379 0.621 24 H -0.262 1.262 25 H -0.252 1.252 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.386 0.614 32 H 0.100 0.900 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -2.969 -1.293 4.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.361 4.361 3 C -0.065 4.065 4 C -0.146 4.146 5 O -0.341 6.341 6 Si 0.616 3.384 7 N -0.269 5.269 8 C -0.050 4.050 9 N -0.292 5.292 10 C -0.047 4.047 11 C 0.032 3.968 12 H 0.131 0.869 13 C -0.183 4.183 14 C 0.022 3.978 15 H 0.097 0.903 16 O -0.356 6.356 17 C -0.223 4.223 18 S 0.344 5.656 19 H 0.089 0.911 20 H 0.077 0.923 21 H 0.109 0.891 22 H 0.136 0.864 23 H 0.226 0.774 24 H -0.188 1.188 25 H -0.176 1.176 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.234 0.766 32 H 0.118 0.882 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.397 -2.526 -1.108 4.376 hybrid contribution 0.035 0.175 1.085 1.100 sum 3.432 -2.351 -0.023 4.160 Atomic orbital electron populations 1.20206 0.86429 1.03091 1.02701 1.25150 1.01280 0.92718 1.16955 1.20137 0.86826 0.97095 1.02422 1.24505 0.92435 0.95576 1.02117 1.86499 1.28864 1.89627 1.29075 0.94069 0.77622 0.76395 0.90278 1.65967 1.17106 1.16572 1.27279 1.23316 0.91261 0.91626 0.98795 1.45934 1.00188 1.05453 1.77576 1.21684 0.88124 0.92800 1.02088 1.22689 0.98374 0.78589 0.97138 0.86858 1.23593 0.98944 0.98043 0.97710 1.22515 0.96234 0.83001 0.96004 0.90321 1.86476 1.59909 1.23962 1.65272 1.24247 0.98837 1.00265 0.98906 1.84013 0.96613 1.10677 1.74300 0.91066 0.92320 0.89077 0.86353 0.77365 1.18790 1.17647 0.92595 0.90383 0.90877 0.89556 0.87910 0.76612 0.88218 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.03 8.95 36.01 0.32 0.29 16 2 C -0.24 -0.54 6.50 -36.02 -0.23 -0.78 16 3 C 0.07 0.19 5.92 -84.18 -0.50 -0.31 16 4 C -0.03 -0.05 2.82 36.01 0.10 0.05 16 5 O -0.54 -0.27 9.90 -35.23 -0.35 -0.62 16 6 Si 0.72 0.96 32.08 -169.99 -5.45 -4.50 16 7 N -0.54 -2.10 8.20 -11.36 -0.09 -2.19 16 8 C 0.32 0.92 7.74 -87.68 -0.68 0.25 16 9 N -0.57 -0.54 3.19 -175.34 -0.56 -1.10 16 10 C 0.10 -0.05 9.56 59.84 0.57 0.53 16 11 C 0.14 -0.06 4.20 -67.12 -0.28 -0.34 16 12 H 0.11 0.05 6.67 -51.94 -0.35 -0.30 16 13 C -0.14 0.20 7.50 -25.92 -0.19 0.01 16 14 C 0.08 -0.18 5.29 -25.83 -0.14 -0.31 16 15 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 16 O -0.55 0.57 13.59 -35.23 -0.48 0.09 16 17 C -0.18 0.38 7.42 -25.83 -0.19 0.19 16 18 S 0.09 0.18 21.51 -107.50 -2.31 -2.13 16 19 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 20 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 21 H 0.09 0.10 6.62 -51.93 -0.34 -0.24 16 22 H 0.12 0.24 7.96 -51.93 -0.41 -0.18 16 23 H 0.38 -1.07 8.68 45.56 0.40 -0.68 16 24 H -0.26 -0.96 7.11 56.52 0.40 -0.56 16 25 H -0.25 -1.15 7.11 56.52 0.40 -0.75 16 26 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.08 0.09 7.68 -51.93 -0.40 -0.31 16 28 H 0.07 -0.19 5.77 -51.92 -0.30 -0.49 16 29 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.10 -0.25 7.47 -51.93 -0.39 -0.63 16 31 H 0.39 -1.94 9.12 45.56 0.42 -1.52 16 32 H 0.10 -0.29 5.95 -51.93 -0.31 -0.60 16 33 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 LS Contribution 283.36 15.07 4.27 4.27 Total: 0.00 -6.35 283.36 -9.62 -15.96 By element: Atomic # 1 Polarization: -5.93 SS G_CDS: -3.42 Total: -9.35 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.22 Total: -0.44 kcal Atomic # 7 Polarization: -2.64 SS G_CDS: -0.65 Total: -3.30 kcal Atomic # 8 Polarization: 0.30 SS G_CDS: -0.83 Total: -0.52 kcal Atomic # 14 Polarization: 0.96 SS G_CDS: -5.45 Total: -4.50 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.31 Total: -2.13 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -6.35 -9.62 -15.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16977506_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.567 kcal (2) G-P(sol) polarization free energy of solvation -6.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds