Wall clock time and date at job start Mon Mar 8 2021 08:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33333 * 125.95132 * 2 1 4 4 C 1.50701 * 122.70874 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47521 * 329.99929 * 4 3 2 6 6 Si 1.86302 * 109.47160 * 209.99680 * 4 3 2 7 7 N 1.32123 * 114.57838 * 180.02562 * 3 2 1 8 8 C 1.29688 * 116.86409 * 0.02562 * 7 3 2 9 9 N 1.38615 * 124.94424 * 179.97438 * 8 7 3 10 10 C 1.46496 * 120.00055 * 0.02562 * 9 8 7 11 11 C 1.46506 * 119.99522 * 179.97438 * 9 8 7 12 12 H 1.08988 * 112.90884 * 354.61563 * 11 9 8 13 13 C 1.53777 * 113.61142 * 125.86838 * 11 9 8 14 14 C 1.53776 * 87.17480 * 139.93652 * 13 11 9 15 15 H 1.08999 * 113.61876 * 220.05972 * 14 13 11 16 16 O 1.42901 * 113.61286 * 89.15544 * 14 13 11 17 17 C 1.53776 * 113.61129 * 223.36238 * 11 9 8 18 18 S 1.70959 * 110.10390 * 0.24565 * 8 7 3 19 19 H 1.09005 * 109.47417 * 89.99703 * 1 2 3 20 20 H 1.08997 * 109.47549 * 210.00134 * 1 2 3 21 21 H 1.09003 * 109.47237 * 330.00554 * 1 2 3 22 22 H 1.09001 * 109.47199 * 89.99932 * 4 3 2 23 23 H 0.96694 * 113.99997 * 300.00144 * 5 4 3 24 24 H 1.48500 * 110.00179 * 180.02562 * 6 4 3 25 25 H 1.48504 * 109.99754 * 301.32617 * 6 4 3 26 26 H 1.08997 * 109.46951 * 272.24051 * 10 9 8 27 27 H 1.08997 * 109.47226 * 32.24053 * 10 9 8 28 28 H 1.09007 * 109.47135 * 152.23921 * 10 9 8 29 29 H 1.09001 * 113.61716 * 254.52963 * 13 11 9 30 30 H 1.09004 * 113.61678 * 25.34526 * 13 11 9 31 31 H 0.96705 * 113.99639 * 180.02562 * 16 14 13 32 32 H 1.09000 * 113.61915 * 334.57262 * 17 11 9 33 33 H 1.09006 * 113.61664 * 105.38731 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4816 2.5020 -0.6746 6 14 2.9326 3.6148 -0.8786 7 7 3.5851 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0015 9 7 5.2385 -0.8926 -0.0027 10 6 6.3517 0.0597 -0.0024 11 6 5.5065 -2.3329 -0.0032 12 1 4.6016 -2.9329 0.0917 13 6 6.4299 -2.7872 -1.1458 14 6 7.0986 -3.7278 -0.1295 15 1 8.1826 -3.7807 -0.2310 16 8 6.4838 -5.0153 -0.0505 17 6 6.6271 -2.7512 0.9633 18 16 2.5413 -1.4260 -0.0087 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6088 2.8217 1.0270 23 1 0.5241 2.2120 -1.5961 24 1 2.4036 5.0024 -0.8855 25 1 4.2561 3.5795 -0.2060 26 1 6.6010 0.3275 -1.0291 27 1 6.0630 0.9559 0.5469 28 1 7.2192 -0.3956 0.4754 29 1 5.9081 -3.3103 -1.9472 30 1 7.0896 -2.0010 -1.5130 31 1 6.8998 -5.6113 0.5874 32 1 7.3418 -1.9555 1.1738 33 1 6.2644 -3.2439 1.8655 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16977506_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:52:42 Heat of formation + Delta-G solvation = 10.758629 kcal Electronic energy + Delta-G solvation = -17473.529233 eV Core-core repulsion = 14629.293427 eV Total energy + Delta-G solvation = -2844.235807 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32118 -40.63755 -38.02499 -36.93797 -34.73015 -32.64775 -29.59856 -28.47782 -26.84793 -25.93461 -25.25688 -23.03898 -20.66077 -20.16885 -19.54551 -18.24347 -17.81592 -17.37870 -16.76493 -16.68343 -15.92743 -15.68773 -15.67500 -14.82207 -14.41647 -14.27692 -13.88330 -13.85123 -13.63008 -13.48815 -13.37215 -13.08437 -13.05452 -12.65204 -12.36043 -12.20254 -12.03675 -11.38484 -10.95366 -10.77264 -10.58321 -10.33925 -10.06166 -8.51881 -4.97217 -0.05926 0.10032 0.72886 1.28471 1.70039 1.74751 1.81178 2.09542 3.05598 3.25538 3.41358 3.50239 3.55786 3.73536 3.90810 4.10754 4.18173 4.31013 4.42285 4.47552 4.52768 4.65803 4.68260 4.78417 4.84065 4.84335 4.92602 4.97090 5.07845 5.13493 5.32787 5.70919 5.97153 6.63878 6.84726 6.89762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.245 4.245 3 C 0.053 3.947 4 C -0.030 4.030 5 O -0.539 6.539 6 Si 0.790 3.210 7 N -0.566 5.566 8 C 0.307 3.693 9 N -0.572 5.572 10 C 0.096 3.904 11 C 0.126 3.874 12 H 0.101 0.899 13 C -0.143 4.143 14 C 0.087 3.913 15 H 0.099 0.901 16 O -0.572 6.572 17 C -0.175 4.175 18 S 0.098 5.902 19 H 0.086 0.914 20 H 0.061 0.939 21 H 0.086 0.914 22 H 0.113 0.887 23 H 0.394 0.606 24 H -0.292 1.292 25 H -0.299 1.299 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.401 0.599 32 H 0.111 0.889 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -3.609 -1.546 5.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.367 4.367 3 C -0.077 4.077 4 C -0.144 4.144 5 O -0.346 6.346 6 Si 0.696 3.304 7 N -0.294 5.294 8 C -0.063 4.063 9 N -0.290 5.290 10 C -0.047 4.047 11 C 0.023 3.977 12 H 0.119 0.881 13 C -0.182 4.182 14 C 0.027 3.973 15 H 0.117 0.883 16 O -0.381 6.381 17 C -0.214 4.214 18 S 0.350 5.650 19 H 0.104 0.896 20 H 0.080 0.920 21 H 0.105 0.895 22 H 0.130 0.870 23 H 0.244 0.756 24 H -0.220 1.220 25 H -0.226 1.226 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.252 0.748 32 H 0.129 0.871 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.772 -3.201 -1.375 5.135 hybrid contribution -0.047 0.348 1.184 1.235 sum 3.725 -2.853 -0.190 4.696 Atomic orbital electron populations 1.20228 0.85253 1.02943 1.03626 1.25409 1.02111 0.92642 1.16570 1.20309 0.86757 0.97718 1.02903 1.24455 0.92844 0.95092 1.01965 1.86470 1.28095 1.89659 1.30383 0.93194 0.74104 0.74070 0.89060 1.65979 1.17740 1.17257 1.28391 1.23602 0.92263 0.91657 0.98766 1.46178 0.99797 1.06200 1.76872 1.21753 0.88402 0.92166 1.02414 1.22836 0.98548 0.77666 0.98682 0.88099 1.23621 0.98842 0.98528 0.97198 1.22542 0.97051 0.82471 0.95204 0.88344 1.86436 1.60841 1.24705 1.66100 1.24224 0.98158 1.00493 0.98514 1.83929 0.96314 1.10487 1.74307 0.89552 0.92049 0.89542 0.86992 0.75570 1.21973 1.22580 0.92065 0.92291 0.88444 0.90789 0.86731 0.74801 0.87052 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.05 8.95 71.24 0.64 0.59 16 2 C -0.24 -1.20 6.50 24.58 0.16 -1.04 16 3 C 0.05 0.35 5.92 41.41 0.25 0.59 16 4 C -0.03 -0.12 2.82 71.24 0.20 0.09 16 5 O -0.54 -0.41 9.90 -148.98 -1.47 -1.89 16 6 Si 0.79 2.95 32.08 68.60 2.20 5.15 16 7 N -0.57 -5.02 8.20 -189.86 -1.56 -6.57 16 8 C 0.31 2.04 7.74 179.32 1.39 3.43 16 9 N -0.57 -1.33 3.19 -708.66 -2.26 -3.59 16 10 C 0.10 -0.08 9.56 127.77 1.22 1.15 16 11 C 0.13 -0.09 4.20 45.51 0.19 0.10 16 12 H 0.10 0.17 6.67 -2.39 -0.02 0.15 16 13 C -0.14 0.45 7.50 31.12 0.23 0.69 16 14 C 0.09 -0.46 5.29 31.18 0.16 -0.29 16 15 H 0.10 -0.89 8.14 -2.39 -0.02 -0.90 16 16 O -0.57 1.45 13.59 -148.98 -2.02 -0.57 16 17 C -0.18 0.85 7.42 31.18 0.23 1.09 16 18 S 0.10 0.45 21.51 -56.49 -1.22 -0.76 16 19 H 0.09 -0.20 8.14 -2.38 -0.02 -0.22 16 20 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 21 H 0.09 0.17 6.62 -2.39 -0.02 0.16 16 22 H 0.11 0.56 7.96 -2.39 -0.02 0.54 16 23 H 0.39 -2.50 8.68 -74.06 -0.64 -3.15 16 24 H -0.29 -2.48 7.11 99.48 0.71 -1.77 16 25 H -0.30 -3.41 7.11 99.48 0.71 -2.71 16 26 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.06 0.21 7.68 -2.39 -0.02 0.19 16 28 H 0.10 -0.60 5.77 -2.38 -0.01 -0.61 16 29 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.11 -0.66 7.47 -2.38 -0.02 -0.68 16 31 H 0.40 -4.27 9.12 -74.05 -0.68 -4.95 16 32 H 0.11 -0.81 5.95 -2.39 -0.01 -0.83 16 33 H 0.08 -0.33 8.14 -2.38 -0.02 -0.35 16 Total: 0.00 -15.39 283.36 -1.79 -17.18 By element: Atomic # 1 Polarization: -15.19 SS G_CDS: -0.14 Total: -15.32 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.67 Total: 6.38 kcal Atomic # 7 Polarization: -6.35 SS G_CDS: -3.82 Total: -10.16 kcal Atomic # 8 Polarization: 1.04 SS G_CDS: -3.50 Total: -2.46 kcal Atomic # 14 Polarization: 2.95 SS G_CDS: 2.20 Total: 5.15 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -1.22 Total: -0.76 kcal Total: -15.39 -1.79 -17.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16977506_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.943 kcal (2) G-P(sol) polarization free energy of solvation -15.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds