Wall clock time and date at job start Mon Mar 8 2021 08:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.39144 * 111.00038 * 2 1 4 4 N 1.32333 * 119.72293 * 236.04670 * 3 2 1 5 5 C 1.32011 * 121.65124 * 179.97438 * 4 3 2 6 6 C 1.37980 * 120.89883 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.32623 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47106 * 119.99968 * 7 6 5 9 9 Si 1.86297 * 109.47074 * 359.97438 * 7 6 5 10 10 C 1.38905 * 119.34782 * 359.97438 * 6 5 4 11 11 C 1.38444 * 118.48623 * 359.75328 * 10 6 5 12 12 F 1.35101 * 120.47699 * 180.27112 * 11 10 6 13 13 C 1.46898 * 111.00651 * 236.04708 * 2 1 3 14 14 H 1.08998 * 112.90630 * 75.19882 * 13 2 1 15 15 C 1.53778 * 113.61883 * 206.45950 * 13 2 1 16 16 C 1.53778 * 87.08449 * 139.97809 * 15 13 2 17 17 H 1.08993 * 113.61229 * 220.02023 * 16 15 13 18 18 O 1.42896 * 113.61445 * 89.11333 * 16 15 13 19 19 C 1.53784 * 87.08081 * 334.56700 * 16 15 13 20 20 H 1.09002 * 109.46757 * 183.95269 * 1 2 3 21 21 H 1.08999 * 109.47240 * 303.95220 * 1 2 3 22 22 H 1.09005 * 109.47153 * 63.95923 * 1 2 3 23 23 H 1.07995 * 119.54866 * 179.97438 * 5 4 3 24 24 H 1.09006 * 109.46970 * 239.99717 * 7 6 5 25 25 H 0.96704 * 113.99625 * 179.97438 * 8 7 6 26 26 H 1.48495 * 110.00207 * 298.68119 * 9 7 6 27 27 H 1.48500 * 109.99839 * 60.00152 * 9 7 6 28 28 H 1.08004 * 120.76102 * 179.97438 * 10 6 5 29 29 H 1.08999 * 113.61111 * 254.52872 * 15 13 2 30 30 H 1.08999 * 113.61280 * 25.34255 * 15 13 2 31 31 H 0.96698 * 113.99953 * 82.50585 * 18 16 15 32 32 H 1.09004 * 113.61451 * 270.88641 * 19 16 15 33 33 H 1.08994 * 113.61477 * 139.97943 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9676 1.2990 0.0000 4 7 2.8020 1.6815 -0.9533 5 6 3.2976 2.9045 -0.9904 6 6 2.9602 3.8352 -0.0292 7 6 3.5341 5.2276 -0.0838 8 8 2.4716 6.1767 -0.1957 9 14 4.6599 5.3779 -1.5605 10 6 2.0865 3.4761 0.9891 11 6 1.5780 2.1885 0.9995 12 9 0.7209 1.7980 1.9680 13 6 1.9956 -0.7659 -1.1375 14 1 1.9082 -0.2333 -2.0845 15 6 3.3940 -1.3554 -0.8889 16 6 2.9045 -2.6191 -1.6158 17 1 3.2476 -3.5466 -1.1577 18 8 3.1158 -2.5849 -3.0286 19 6 1.4816 -2.2142 -1.1958 20 1 -0.3633 -1.0253 0.0708 21 1 -0.3633 0.5739 0.8524 22 1 -0.3634 0.4512 -0.9234 23 1 3.9763 3.1803 -1.7839 24 1 4.1012 5.4228 0.8265 25 1 2.7683 7.0962 -0.2355 26 1 5.7866 4.4181 -1.4400 27 1 3.8990 5.1139 -2.8081 28 1 1.8073 4.1863 1.7535 29 1 4.1896 -0.8290 -1.4161 30 1 3.6189 -1.5159 0.1654 31 1 4.0089 -2.8385 -3.2989 32 1 1.1832 -2.6109 -0.2253 33 1 0.7335 -2.3812 -1.9706 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16977506_17656566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:52:44 Heat of formation + Delta-G solvation = -32.185746 kcal Electronic energy + Delta-G solvation = -19418.317997 eV Core-core repulsion = 16169.151380 eV Total energy + Delta-G solvation = -3249.166617 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.106 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.24203 -42.03787 -40.52860 -38.22938 -37.25841 -35.00053 -33.69477 -31.94663 -28.40277 -26.77226 -26.50100 -25.35282 -24.00489 -22.67828 -20.69104 -19.17820 -18.93612 -18.49429 -18.17177 -17.86373 -17.23253 -16.64018 -16.50926 -16.32362 -15.60013 -15.39322 -15.18805 -14.74732 -14.56360 -14.31976 -14.26588 -13.97162 -13.58040 -13.34498 -13.10224 -12.80560 -12.56151 -12.18165 -11.99666 -11.46265 -11.25850 -11.07023 -10.84983 -10.75695 -10.33768 -9.35742 -4.98263 -0.47865 -0.22555 1.23772 1.62842 1.93015 2.01113 2.28145 2.84284 2.94650 3.07217 3.18696 3.34143 3.47007 3.57362 3.66672 3.69193 3.91098 4.10627 4.12364 4.18492 4.25722 4.31292 4.44805 4.50597 4.65714 4.71256 4.73776 4.75092 4.87970 4.98497 5.04776 5.11353 5.46843 5.77415 6.47411 6.79050 6.88053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.470 5.470 3 C 0.280 3.720 4 N -0.502 5.502 5 C 0.101 3.899 6 C -0.133 4.133 7 C -0.068 4.068 8 O -0.563 6.563 9 Si 0.775 3.225 10 C -0.056 4.056 11 C 0.024 3.976 12 F -0.123 7.123 13 C 0.068 3.932 14 H 0.068 0.932 15 C -0.147 4.147 16 C 0.085 3.915 17 H 0.095 0.905 18 O -0.571 6.571 19 C -0.122 4.122 20 H 0.106 0.894 21 H 0.088 0.912 22 H 0.035 0.965 23 H 0.158 0.842 24 H 0.108 0.892 25 H 0.408 0.592 26 H -0.283 1.283 27 H -0.296 1.296 28 H 0.174 0.826 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.399 0.601 32 H 0.117 0.883 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 3.291 1.425 4.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.187 5.187 3 C 0.046 3.954 4 N -0.215 5.215 5 C -0.056 4.056 6 C -0.136 4.136 7 C -0.179 4.179 8 O -0.374 6.374 9 Si 0.681 3.319 10 C -0.082 4.082 11 C 0.000 4.000 12 F -0.101 7.101 13 C -0.038 4.038 14 H 0.086 0.914 15 C -0.185 4.185 16 C 0.025 3.975 17 H 0.113 0.887 18 O -0.380 6.380 19 C -0.160 4.160 20 H 0.125 0.875 21 H 0.106 0.894 22 H 0.054 0.946 23 H 0.174 0.826 24 H 0.125 0.875 25 H 0.260 0.740 26 H -0.210 1.210 27 H -0.224 1.224 28 H 0.191 0.809 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.249 0.751 32 H 0.136 0.864 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.568 1.622 0.576 3.092 hybrid contribution -0.274 0.327 0.426 0.603 sum 2.294 1.949 1.002 3.172 Atomic orbital electron populations 1.22760 0.82684 1.05645 1.02261 1.59556 1.10189 1.06933 1.41972 1.20206 0.94585 0.90221 0.90359 1.67651 1.12517 1.18758 1.22553 1.22495 0.97528 0.88473 0.97126 1.20491 1.00165 0.97209 0.95770 1.24663 0.95498 0.85475 1.12241 1.86431 1.33139 1.20542 1.97248 0.94103 0.75897 0.88183 0.73752 1.21639 0.93843 0.93675 0.99036 1.18245 0.97066 0.94551 0.90159 1.91462 1.67145 1.91113 1.60404 1.23088 0.97334 0.92790 0.90634 0.91409 1.23579 0.95887 0.97443 1.01611 1.22569 0.96706 0.96950 0.81293 0.88709 1.86422 1.38124 1.91903 1.21547 1.23265 0.96609 0.93135 1.02965 0.87508 0.89368 0.94583 0.82582 0.87455 0.74001 1.20979 1.22366 0.80874 0.91768 0.88856 0.75090 0.86446 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.00 127.69 1.15 1.19 16 2 N -0.47 -3.23 4.71 -699.39 -3.29 -6.52 16 3 C 0.28 2.62 6.35 133.09 0.84 3.47 16 4 N -0.50 -5.27 8.48 -193.03 -1.64 -6.90 16 5 C 0.10 0.75 9.84 84.60 0.83 1.58 16 6 C -0.13 -0.53 5.43 -19.77 -0.11 -0.64 16 7 C -0.07 0.21 2.83 71.24 0.20 0.42 16 8 O -0.56 1.72 12.76 -148.98 -1.90 -0.18 16 9 Si 0.78 -3.11 29.82 68.60 2.05 -1.06 16 10 C -0.06 -0.24 9.75 22.48 0.22 -0.02 16 11 C 0.02 0.18 6.99 22.59 0.16 0.34 16 12 F -0.12 -0.92 14.76 44.97 0.66 -0.25 16 13 C 0.07 0.42 2.49 45.44 0.11 0.54 16 14 H 0.07 0.76 7.63 -2.39 -0.02 0.74 16 15 C -0.15 -0.61 7.41 31.12 0.23 -0.38 16 16 C 0.08 0.11 5.28 31.12 0.16 0.28 16 17 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 18 O -0.57 -1.99 13.59 -148.98 -2.02 -4.01 16 19 C -0.12 -0.22 6.44 31.12 0.20 -0.02 16 20 H 0.11 -0.08 7.05 -2.39 -0.02 -0.10 16 21 H 0.09 0.31 5.58 -2.39 -0.01 0.30 16 22 H 0.04 0.16 8.14 -2.38 -0.02 0.14 16 23 H 0.16 0.87 4.88 -2.91 -0.01 0.86 16 24 H 0.11 -0.87 7.96 -2.38 -0.02 -0.89 16 25 H 0.41 -5.59 8.74 -74.05 -0.65 -6.23 16 26 H -0.28 -0.36 7.11 99.48 0.71 0.35 16 27 H -0.30 -1.22 7.11 99.48 0.71 -0.52 16 28 H 0.17 -0.03 8.06 -2.91 -0.02 -0.05 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.36 8.14 -2.39 -0.02 0.35 16 31 H 0.40 -1.92 9.12 -74.06 -0.68 -2.59 16 32 H 0.12 -0.14 7.89 -2.39 -0.02 -0.16 16 33 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 Total: 0.00 -17.43 277.74 -2.27 -19.70 By element: Atomic # 1 Polarization: -7.39 SS G_CDS: -0.13 Total: -7.52 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 4.01 Total: 6.75 kcal Atomic # 7 Polarization: -8.49 SS G_CDS: -4.93 Total: -13.42 kcal Atomic # 8 Polarization: -0.27 SS G_CDS: -3.92 Total: -4.19 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.66 Total: -0.25 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.05 Total: -1.06 kcal Total: -17.43 -2.27 -19.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16977506_17656566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.487 kcal (2) G-P(sol) polarization free energy of solvation -17.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds