Wall clock time and date at job start Mon Mar 8 2021 09:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47420 * 2 1 4 4 C 1.53004 * 109.46622 * 240.00226 * 2 1 3 5 5 Si 1.86298 * 109.47153 * 120.00204 * 2 1 3 6 6 C 1.86293 * 109.47320 * 299.99566 * 5 2 1 7 7 C 1.86307 * 109.47045 * 179.97438 * 5 2 1 8 8 O 1.63105 * 109.46974 * 59.99911 * 5 2 1 9 9 C 1.35988 * 113.99543 * 180.02562 * 8 5 2 10 10 C 1.38716 * 119.97960 * 269.72228 * 9 8 5 11 11 C 1.38098 * 120.01373 * 179.72719 * 10 9 8 12 12 C 1.38855 * 119.98549 * 0.57198 * 11 10 9 13 13 N 1.40040 * 120.02010 * 179.72211 * 12 11 10 14 14 C 1.38494 * 120.00302 * 321.09504 * 13 12 11 15 15 N 1.32505 * 119.21402 * 354.17032 * 14 13 12 16 16 C 1.32270 * 120.73771 * 179.75870 * 15 14 13 17 17 C 1.38607 * 119.19860 * 0.51278 * 16 15 14 18 18 C 1.50700 * 120.72022 * 179.72413 * 17 16 15 19 19 O 1.42905 * 109.47054 * 245.01881 * 18 17 16 20 20 Si 1.86293 * 109.47317 * 5.02163 * 18 17 16 21 21 H 1.48498 * 109.47043 * 60.00059 * 20 18 17 22 22 H 1.48506 * 109.47346 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47160 * 299.99877 * 20 18 17 24 24 C 1.38617 * 118.56063 * 359.74541 * 17 16 15 25 25 N 1.32269 * 119.19564 * 0.02562 * 24 17 16 26 26 C 1.38861 * 119.96174 * 359.70194 * 12 11 10 27 27 C 1.38089 * 119.98301 * 0.02562 * 26 12 11 28 28 H 1.09009 * 109.46741 * 299.99930 * 1 2 3 29 29 H 1.09001 * 109.47114 * 59.99597 * 1 2 3 30 30 H 1.09001 * 109.47611 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47037 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47149 * 300.00631 * 3 2 1 33 33 H 1.08999 * 109.47206 * 60.00217 * 3 2 1 34 34 H 1.09003 * 109.47304 * 299.99567 * 4 2 1 35 35 H 1.08996 * 109.47426 * 59.99794 * 4 2 1 36 36 H 1.08999 * 109.46809 * 180.02562 * 4 2 1 37 37 H 1.08996 * 109.47371 * 180.02562 * 6 5 2 38 38 H 1.09003 * 109.47327 * 300.00527 * 6 5 2 39 39 H 1.09002 * 109.47326 * 59.99897 * 6 5 2 40 40 H 1.08998 * 109.46607 * 300.00103 * 7 5 2 41 41 H 1.08991 * 109.46897 * 59.99591 * 7 5 2 42 42 H 1.09001 * 109.47005 * 180.02562 * 7 5 2 43 43 H 1.07997 * 119.99067 * 359.97438 * 10 9 8 44 44 H 1.08008 * 120.00630 * 180.26978 * 11 10 9 45 45 H 0.97001 * 120.00038 * 141.08664 * 13 12 11 46 46 H 1.08002 * 120.40112 * 180.23255 * 16 15 14 47 47 H 1.09005 * 109.47405 * 125.02772 * 18 17 16 48 48 H 0.96704 * 113.99835 * 60.00316 * 19 18 17 49 49 H 1.08000 * 120.40254 * 180.02562 * 24 17 16 50 50 H 1.08004 * 120.00518 * 179.97438 * 26 12 11 51 51 H 1.08005 * 119.99409 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5302 -0.0001 3.0422 7 6 4.0141 -0.8789 1.5207 8 8 1.6073 -2.4160 1.5210 9 6 2.0081 -3.1444 2.5972 10 6 3.1909 -3.8672 2.5433 11 6 3.6015 -4.6026 3.6377 12 6 2.8241 -4.6279 4.7880 13 7 3.2369 -5.3780 5.8962 14 6 3.8299 -6.6160 5.7124 15 7 3.8941 -7.1276 4.4918 16 6 4.4581 -8.3053 4.2812 17 6 4.9753 -9.0095 5.3572 18 6 5.6196 -10.3570 5.1573 19 8 4.8438 -11.3587 5.8183 20 14 5.7064 -10.7399 3.3362 21 1 6.5126 -9.6990 2.6494 22 1 6.3408 -12.0682 3.1392 23 1 4.3344 -10.7582 2.7683 24 6 4.8867 -8.4475 6.6212 25 7 4.3142 -7.2635 6.7622 26 6 1.6374 -3.9086 4.8391 27 6 1.2311 -3.1692 3.7459 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1393 36 1 3.1299 -0.7217 -1.2491 37 1 1.8939 -0.5137 3.9322 38 1 1.8935 1.0276 3.0422 39 1 0.4402 0.0000 3.0423 40 1 4.3769 -1.3930 0.6306 41 1 4.3777 0.1485 1.5204 42 1 4.3774 -1.3932 2.4104 43 1 3.7927 -3.8516 1.6467 44 1 4.5246 -5.1618 3.5972 45 1 3.1076 -5.0305 6.7925 46 1 4.5108 -8.7155 3.2834 47 1 6.6267 -10.3438 5.5742 48 1 3.9342 -11.4270 5.4974 49 1 5.2803 -8.9700 7.4805 50 1 1.0321 -3.9281 5.7333 51 1 0.3083 -2.6093 3.7855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16978794_12175864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:11 Heat of formation + Delta-G solvation = -22.897477 kcal Electronic energy + Delta-G solvation = -29953.324397 eV Core-core repulsion = 25977.090614 eV Total energy + Delta-G solvation = -3976.233784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.35082 -40.92108 -38.74533 -37.79267 -36.86927 -35.89770 -34.86930 -32.72221 -32.03158 -29.65827 -29.11660 -29.07187 -27.86106 -27.40460 -26.68601 -25.95055 -23.99393 -23.54691 -22.67928 -20.51154 -19.71170 -19.24389 -18.87852 -18.19904 -17.46882 -16.90030 -16.61880 -16.45839 -16.24290 -15.99628 -15.95885 -15.57199 -15.21809 -14.87903 -14.80096 -14.74574 -14.43228 -14.34696 -14.13984 -13.97741 -13.71571 -13.49541 -13.39530 -13.24859 -13.16465 -13.09804 -12.96144 -12.91358 -12.44284 -12.37681 -12.22928 -12.20931 -11.98375 -11.87938 -11.74002 -11.68468 -11.63007 -11.58968 -10.60520 -10.51108 -10.13382 -10.11605 -9.98458 -9.94681 -8.66080 -0.26219 0.02799 0.33836 0.36196 1.18241 1.37797 1.46870 1.52537 1.61325 1.70039 1.94312 2.00858 2.37458 2.62625 2.84403 3.03646 3.49827 3.55053 3.60827 3.73181 3.92381 3.95791 4.09047 4.10173 4.16000 4.22763 4.38308 4.46290 4.49736 4.57028 4.67167 4.72707 4.73207 4.76587 4.78896 4.81820 4.82620 4.84725 4.99102 5.01614 5.08265 5.08564 5.16481 5.20173 5.31552 5.34007 5.39375 5.42695 5.43930 5.48144 5.56959 5.62298 5.69174 5.90251 6.18743 6.25474 6.70293 7.13305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.375 4.375 3 C -0.142 4.142 4 C -0.140 4.140 5 Si 1.298 2.702 6 C -0.510 4.510 7 C -0.513 4.513 8 O -0.571 6.571 9 C 0.108 3.892 10 C -0.144 4.144 11 C -0.094 4.094 12 C 0.135 3.865 13 N -0.634 5.634 14 C 0.547 3.453 15 N -0.568 5.568 16 C 0.177 3.823 17 C -0.273 4.273 18 C -0.052 4.052 19 O -0.549 6.549 20 Si 0.967 3.033 21 H -0.255 1.255 22 H -0.269 1.269 23 H -0.251 1.251 24 C 0.217 3.783 25 N -0.575 5.575 26 C -0.116 4.116 27 C -0.141 4.141 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.140 0.860 44 H 0.126 0.874 45 H 0.431 0.569 46 H 0.176 0.824 47 H 0.135 0.865 48 H 0.388 0.612 49 H 0.196 0.804 50 H 0.151 0.849 51 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 0.428 0.612 1.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.418 4.418 3 C -0.199 4.199 4 C -0.197 4.197 5 Si 1.432 2.568 6 C -0.613 4.613 7 C -0.615 4.615 8 O -0.525 6.525 9 C 0.064 3.936 10 C -0.163 4.163 11 C -0.115 4.115 12 C 0.040 3.960 13 N -0.265 5.265 14 C 0.191 3.809 15 N -0.289 5.289 16 C 0.010 3.990 17 C -0.281 4.281 18 C -0.165 4.165 19 O -0.356 6.356 20 Si 0.791 3.209 21 H -0.179 1.179 22 H -0.194 1.194 23 H -0.175 1.175 24 C 0.050 3.950 25 N -0.297 5.297 26 C -0.136 4.136 27 C -0.160 4.160 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.158 0.842 44 H 0.143 0.857 45 H 0.272 0.728 46 H 0.193 0.807 47 H 0.153 0.847 48 H 0.237 0.763 49 H 0.212 0.788 50 H 0.169 0.831 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.715 0.930 -0.082 1.176 hybrid contribution -0.034 -0.150 0.241 0.286 sum 0.681 0.780 0.158 1.048 Atomic orbital electron populations 1.21578 0.93983 1.01854 1.02265 1.25788 1.00595 1.03104 1.12342 1.21612 1.01363 0.94355 1.02536 1.21579 1.01170 0.99991 0.96979 0.76712 0.63144 0.51745 0.65211 1.27010 1.07230 1.09733 1.17309 1.27064 1.24629 1.05216 1.04611 1.83822 1.78223 1.45873 1.44608 1.18150 0.93568 0.95938 0.85941 1.21233 0.96629 0.98991 0.99472 1.20873 0.99566 0.98468 0.92598 1.17639 0.94305 0.95694 0.88334 1.41464 1.61835 1.14050 1.09132 1.19484 0.88648 0.87312 0.85484 1.68095 1.22708 1.15134 1.22990 1.23224 0.87737 0.88038 0.99960 1.21887 1.08660 1.01797 0.95759 1.24657 0.98004 0.83367 1.10430 1.86512 1.28729 1.55566 1.64806 0.85430 0.81187 0.80281 0.74006 1.17919 1.19354 1.17526 1.23307 0.86909 0.87200 0.97599 1.67988 1.17012 1.11753 1.32898 1.20962 0.93952 0.98651 1.00082 1.21266 1.01326 1.01714 0.91686 0.91746 0.92895 0.92641 0.91762 0.92722 0.91579 0.92681 0.92854 0.91966 0.91091 0.89877 0.90455 0.90826 0.89886 0.91429 0.84227 0.85654 0.72799 0.80695 0.84716 0.76251 0.78775 0.83091 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.00 7.85 71.98 0.56 0.57 16 2 C -0.37 0.24 0.53 -10.79 -0.01 0.23 16 3 C -0.14 0.27 7.85 71.98 0.56 0.83 16 4 C -0.14 -0.05 7.85 71.98 0.56 0.51 16 5 Si 1.30 -1.56 8.27 68.60 0.57 -0.99 16 6 C -0.51 0.85 8.31 113.37 0.94 1.79 16 7 C -0.51 0.27 8.32 113.37 0.94 1.22 16 8 O -0.57 -1.74 8.52 -93.41 -0.80 -2.53 16 9 C 0.11 0.38 4.63 22.50 0.10 0.48 16 10 C -0.14 -0.53 8.79 22.35 0.20 -0.34 16 11 C -0.09 -0.43 8.54 22.38 0.19 -0.24 16 12 C 0.14 0.45 6.17 38.13 0.24 0.68 16 13 N -0.63 -1.70 5.48 -190.59 -1.04 -2.75 16 14 C 0.55 3.04 8.13 261.43 2.12 5.17 16 15 N -0.57 -3.21 7.52 -197.90 -1.49 -4.70 16 16 C 0.18 0.21 9.92 84.72 0.84 1.05 16 17 C -0.27 0.42 5.36 -19.69 -0.11 0.31 16 18 C -0.05 0.26 2.83 71.24 0.20 0.46 16 19 O -0.55 1.87 12.85 -148.98 -1.91 -0.05 16 20 Si 0.97 -3.93 25.21 68.60 1.73 -2.20 16 21 H -0.26 0.69 7.11 99.48 0.71 1.40 16 22 H -0.27 0.09 7.11 99.48 0.71 0.80 16 23 H -0.25 0.92 7.05 99.48 0.70 1.62 16 24 C 0.22 0.03 10.99 84.72 0.93 0.96 16 25 N -0.58 -2.62 10.46 -197.89 -2.07 -4.69 16 26 C -0.12 -0.07 9.96 22.38 0.22 0.15 16 27 C -0.14 -0.20 8.77 22.35 0.20 0.00 16 28 H 0.06 -0.12 7.79 -2.38 -0.02 -0.14 16 29 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.05 0.05 7.96 -2.39 -0.02 0.03 16 31 H 0.06 -0.21 7.79 -2.39 -0.02 -0.23 16 32 H 0.05 -0.06 8.14 -2.38 -0.02 -0.07 16 33 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 34 H 0.05 0.07 7.97 -2.39 -0.02 0.05 16 35 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 37 H 0.07 -0.08 7.38 -2.39 -0.02 -0.10 16 38 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 40 H 0.07 -0.04 7.79 -2.39 -0.02 -0.06 16 41 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 42 H 0.07 0.03 7.39 -2.39 -0.02 0.02 16 43 H 0.14 0.21 8.06 -2.91 -0.02 0.18 16 44 H 0.13 0.68 6.73 -2.91 -0.02 0.66 16 45 H 0.43 -0.49 8.94 -92.71 -0.83 -1.32 16 46 H 0.18 -0.46 5.03 -2.91 -0.01 -0.48 16 47 H 0.14 -1.02 7.96 -2.38 -0.02 -1.04 16 48 H 0.39 -3.46 8.70 -74.05 -0.64 -4.10 16 49 H 0.20 -0.93 8.06 -2.91 -0.02 -0.95 16 50 H 0.15 -0.60 8.06 -2.91 -0.02 -0.62 16 51 H 0.15 -0.29 8.06 -2.91 -0.02 -0.32 16 Total: 0.00 -13.60 411.41 3.91 -9.69 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: 0.22 Total: -5.63 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 8.71 Total: 13.84 kcal Atomic # 7 Polarization: -7.53 SS G_CDS: -4.60 Total: -12.13 kcal Atomic # 8 Polarization: 0.13 SS G_CDS: -2.71 Total: -2.58 kcal Atomic # 14 Polarization: -5.48 SS G_CDS: 2.30 Total: -3.19 kcal Total: -13.60 3.91 -9.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16978794_12175864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.206 kcal (2) G-P(sol) polarization free energy of solvation -13.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds