Wall clock time and date at job start Mon Mar 8 2021 09:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47525 * 239.99614 * 2 1 3 5 5 Si 1.86298 * 109.46814 * 119.99733 * 2 1 3 6 6 C 1.86298 * 109.47353 * 299.99945 * 5 2 1 7 7 C 1.86300 * 109.46970 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47342 * 60.00453 * 5 2 1 9 9 C 1.35993 * 114.00086 * 180.02562 * 8 5 2 10 10 C 1.38711 * 119.98525 * 90.00068 * 9 8 5 11 11 C 1.38091 * 120.02263 * 180.29722 * 10 9 8 12 12 C 1.38879 * 119.97421 * 359.46616 * 11 10 9 13 13 N 1.39989 * 120.01334 * 180.27946 * 12 11 10 14 14 C 1.38657 * 120.00436 * 30.38407 * 13 12 11 15 15 N 1.29708 * 124.94490 * 5.82338 * 14 13 12 16 16 C 1.32083 * 116.86521 * 179.77487 * 15 14 13 17 17 C 1.33355 * 114.58383 * 0.50657 * 16 15 14 18 18 C 1.50698 * 125.95161 * 179.75177 * 17 16 15 19 19 O 1.42899 * 109.47176 * 300.00287 * 18 17 16 20 20 Si 1.86305 * 109.46911 * 180.02562 * 18 17 16 21 21 H 1.48506 * 109.46716 * 60.00249 * 20 18 17 22 22 H 1.48494 * 109.47200 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47375 * 300.00392 * 20 18 17 24 24 S 1.70963 * 124.94880 * 186.12361 * 14 13 12 25 25 C 1.38881 * 119.96525 * 0.53164 * 12 11 10 26 26 C 1.38094 * 119.97667 * 359.72349 * 25 12 11 27 27 H 1.08995 * 109.47379 * 300.00300 * 1 2 3 28 28 H 1.09001 * 109.46843 * 60.00388 * 1 2 3 29 29 H 1.09007 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46608 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.46944 * 299.99795 * 3 2 1 32 32 H 1.09001 * 109.46957 * 59.99884 * 3 2 1 33 33 H 1.08994 * 109.47313 * 300.00538 * 4 2 1 34 34 H 1.09006 * 109.46685 * 59.99862 * 4 2 1 35 35 H 1.08993 * 109.47362 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47438 * 180.02562 * 6 5 2 37 37 H 1.08995 * 109.47611 * 300.00409 * 6 5 2 38 38 H 1.09002 * 109.47069 * 60.00459 * 6 5 2 39 39 H 1.09000 * 109.47565 * 299.99718 * 7 5 2 40 40 H 1.08994 * 109.47330 * 60.00314 * 7 5 2 41 41 H 1.09006 * 109.47407 * 180.02562 * 7 5 2 42 42 H 1.08004 * 119.98730 * 0.02562 * 10 9 8 43 43 H 1.08001 * 120.00732 * 179.69360 * 11 10 9 44 44 H 0.97009 * 119.99263 * 210.38321 * 13 12 11 45 45 H 1.07996 * 122.70262 * 180.24589 * 16 15 14 46 46 H 1.09001 * 109.47118 * 60.00906 * 18 17 16 47 47 H 0.96693 * 113.99987 * 300.00049 * 19 18 17 48 48 H 1.07992 * 120.00972 * 179.74363 * 25 12 11 49 49 H 1.07999 * 119.98544 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 14 2.1509 -0.8782 1.5212 6 6 1.5299 0.0001 3.0423 7 6 4.0139 -0.8775 1.5216 8 8 1.6073 -2.4159 1.5212 9 6 2.0081 -3.1442 2.5975 10 6 1.2311 -3.1686 3.7463 11 6 1.6404 -3.9030 4.8418 12 6 2.8248 -4.6262 4.7891 13 7 3.2376 -5.3757 5.8971 14 6 2.2948 -5.9256 6.7523 15 7 1.0123 -5.8983 6.5606 16 6 0.2592 -6.4772 7.4784 17 6 0.9361 -7.0089 8.4969 18 6 0.3367 -7.7225 9.6812 19 8 -0.5393 -6.8348 10.3789 20 14 1.6978 -8.2778 10.8257 21 1 2.4626 -7.0947 11.2958 22 1 1.1072 -8.9804 11.9930 23 1 2.6085 -9.2000 10.1011 24 16 2.6532 -6.7320 8.2166 25 6 3.6022 -4.6013 3.6385 26 6 3.1939 -3.8621 2.5458 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2493 36 1 1.8935 -0.5134 3.9323 37 1 1.8931 1.0277 3.0423 38 1 0.4399 0.0001 3.0423 39 1 4.3777 -1.3912 0.6317 40 1 4.3769 0.1502 1.5219 41 1 4.3773 -1.3917 2.4114 42 1 0.3078 -2.6095 3.7855 43 1 1.0377 -3.9179 5.7378 44 1 4.1832 -5.5102 6.0665 45 1 -0.8181 -6.5131 7.4115 46 1 -0.2250 -8.5906 9.3361 47 1 -0.1061 -6.0384 10.7150 48 1 4.5254 -5.1601 3.5982 49 1 3.7981 -3.8429 1.6508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16978794_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:34 Heat of formation + Delta-G solvation = -42.470978 kcal Electronic energy + Delta-G solvation = -28175.350911 eV Core-core repulsion = 24352.846514 eV Total energy + Delta-G solvation = -3822.504397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.39244 -40.48170 -38.59816 -37.71470 -36.89548 -35.76032 -32.13241 -31.51652 -29.75385 -29.18335 -29.10159 -27.91027 -27.42015 -26.79214 -24.84507 -23.84620 -23.16863 -20.98624 -20.51749 -20.00302 -18.84616 -18.59002 -17.77166 -17.07458 -16.69422 -16.40842 -16.34258 -16.13936 -15.99720 -15.50900 -15.35198 -15.04192 -14.90782 -14.80694 -14.47552 -14.25118 -14.16035 -13.92326 -13.70688 -13.49922 -13.41576 -13.26923 -13.15460 -12.97232 -12.95664 -12.94022 -12.47613 -12.43686 -12.39967 -12.39382 -12.01211 -11.87769 -11.75291 -11.65087 -11.57970 -10.79134 -10.52469 -10.39424 -10.24793 -10.13734 -9.91183 -9.69432 -8.42662 -0.35919 -0.13553 0.38876 0.42500 0.53562 1.05709 1.33126 1.37525 1.41524 1.65169 1.83252 1.89605 1.94647 1.96349 2.36719 2.85844 3.36314 3.54130 3.84875 3.90411 4.01078 4.06985 4.07132 4.26717 4.39149 4.44288 4.49710 4.54870 4.63004 4.66563 4.67906 4.71509 4.74434 4.75098 4.77741 4.81809 4.96065 5.04236 5.06363 5.06683 5.13926 5.16949 5.26644 5.30549 5.38381 5.42353 5.47905 5.51448 5.57343 5.61114 5.80770 5.96548 6.24205 6.44177 6.86042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.136 4.136 5 Si 1.279 2.721 6 C -0.506 4.506 7 C -0.506 4.506 8 O -0.560 6.560 9 C 0.113 3.887 10 C -0.132 4.132 11 C -0.097 4.097 12 C 0.144 3.856 13 N -0.630 5.630 14 C 0.311 3.689 15 N -0.532 5.532 16 C 0.117 3.883 17 C -0.299 4.299 18 C -0.024 4.024 19 O -0.534 6.534 20 Si 0.898 3.102 21 H -0.237 1.237 22 H -0.228 1.228 23 H -0.236 1.236 24 S 0.094 5.906 25 C -0.126 4.126 26 C -0.133 4.133 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.144 0.856 44 H 0.424 0.576 45 H 0.182 0.818 46 H 0.127 0.873 47 H 0.378 0.622 48 H 0.131 0.869 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 0.581 1.517 3.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.417 4.417 3 C -0.194 4.194 4 C -0.193 4.193 5 Si 1.413 2.587 6 C -0.609 4.609 7 C -0.609 4.609 8 O -0.514 6.514 9 C 0.068 3.932 10 C -0.151 4.151 11 C -0.118 4.118 12 C 0.047 3.953 13 N -0.261 5.261 14 C -0.058 4.058 15 N -0.256 5.256 16 C -0.034 4.034 17 C -0.421 4.421 18 C -0.138 4.138 19 O -0.339 6.339 20 Si 0.718 3.282 21 H -0.160 1.160 22 H -0.151 1.151 23 H -0.159 1.159 24 S 0.344 5.656 25 C -0.147 4.147 26 C -0.152 4.152 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.263 0.737 45 H 0.199 0.801 46 H 0.144 0.856 47 H 0.225 0.775 48 H 0.149 0.851 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.785 -0.287 1.789 4.196 hybrid contribution -0.238 0.830 -0.331 0.925 sum 3.547 0.544 1.459 3.873 Atomic orbital electron populations 1.21535 0.93688 1.02108 1.01986 1.25745 1.00797 1.02711 1.12401 1.21557 1.00832 0.94731 1.02283 1.21533 1.00689 1.00270 0.96800 0.77025 0.63655 0.52563 0.65428 1.27001 1.07014 1.09323 1.17588 1.26994 1.24226 1.04862 1.04784 1.83825 1.77983 1.45088 1.44468 1.18010 0.93243 0.96147 0.85773 1.21161 1.00698 1.01373 0.91871 1.21024 0.96222 0.94977 0.99599 1.17652 0.96541 0.94460 0.86642 1.41392 1.06591 1.53474 1.24663 1.23574 0.91072 0.97188 0.93955 1.66627 1.01234 1.26496 1.31217 1.21435 1.01067 0.93449 0.87431 1.25739 0.93277 1.16653 1.06430 1.24087 1.01370 0.95134 0.93193 1.86537 1.37544 1.35916 1.73890 0.86283 0.77679 0.82942 0.81316 1.16012 1.15079 1.15859 1.84115 1.08540 1.55727 1.17182 1.20651 1.01290 1.01707 0.91091 1.21031 0.96205 0.98974 0.99015 0.92569 0.92588 0.92142 0.92439 0.92335 0.92427 0.92154 0.92596 0.92590 0.90997 0.90556 0.90765 0.90798 0.90534 0.90991 0.84776 0.83856 0.73694 0.80102 0.85559 0.77507 0.85137 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.02 7.85 37.16 0.29 0.27 16 2 C -0.37 0.07 0.53 -90.62 -0.05 0.03 16 3 C -0.14 0.10 7.85 37.16 0.29 0.39 16 4 C -0.14 0.00 7.85 37.16 0.29 0.29 16 5 Si 1.28 -0.61 8.27 -169.99 -1.41 -2.02 16 6 C -0.51 0.10 8.31 101.05 0.84 0.94 16 7 C -0.51 0.28 8.31 101.05 0.84 1.12 16 8 O -0.56 -0.87 8.52 -19.72 -0.17 -1.04 16 9 C 0.11 0.20 4.64 -39.23 -0.18 0.02 16 10 C -0.13 -0.23 8.76 -39.46 -0.35 -0.58 16 11 C -0.10 -0.19 8.76 -39.40 -0.35 -0.54 16 12 C 0.14 0.16 6.40 -83.66 -0.54 -0.38 16 13 N -0.63 0.13 5.51 -11.60 -0.06 0.06 16 14 C 0.31 0.37 7.76 -87.62 -0.68 -0.31 16 15 N -0.53 -1.32 7.80 -15.19 -0.12 -1.44 16 16 C 0.12 0.13 11.22 -19.15 -0.21 -0.09 16 17 C -0.30 -0.03 5.75 -36.02 -0.21 -0.24 16 18 C -0.02 0.03 2.99 36.00 0.11 0.13 16 19 O -0.53 0.27 12.87 -35.23 -0.45 -0.18 16 20 Si 0.90 -0.85 26.34 -169.99 -4.48 -5.33 16 21 H -0.24 0.16 7.11 56.52 0.40 0.56 16 22 H -0.23 -0.01 7.11 56.52 0.40 0.40 16 23 H -0.24 0.07 7.11 56.52 0.40 0.47 16 24 S 0.09 -0.01 20.57 -107.50 -2.21 -2.22 16 25 C -0.13 -0.01 9.95 -39.40 -0.39 -0.40 16 26 C -0.13 -0.10 8.76 -39.46 -0.35 -0.45 16 27 H 0.06 -0.03 7.79 -51.93 -0.40 -0.43 16 28 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.06 0.03 7.97 -51.92 -0.41 -0.38 16 30 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 31 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 32 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 33 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 34 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.06 -0.04 7.79 -51.93 -0.40 -0.44 16 36 H 0.07 0.01 7.38 -51.93 -0.38 -0.37 16 37 H 0.08 -0.06 7.79 -51.93 -0.40 -0.46 16 38 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 39 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 40 H 0.08 -0.08 7.79 -51.93 -0.40 -0.48 16 41 H 0.07 -0.03 7.38 -51.93 -0.38 -0.41 16 42 H 0.13 0.09 8.06 -52.48 -0.42 -0.33 16 43 H 0.14 0.36 6.20 -52.49 -0.33 0.03 16 44 H 0.42 -1.28 8.93 -40.82 -0.36 -1.65 16 45 H 0.18 -0.04 8.06 -52.49 -0.42 -0.46 16 46 H 0.13 -0.26 7.96 -51.93 -0.41 -0.67 16 47 H 0.38 -1.31 8.70 45.56 0.40 -0.91 16 48 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 49 H 0.14 -0.10 8.06 -52.49 -0.42 -0.52 16 LS Contribution 408.33 15.07 6.15 6.15 Total: 0.00 -5.46 408.33 -10.67 -16.13 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -7.29 Total: -10.32 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.63 Total: 0.20 kcal Atomic # 7 Polarization: -1.19 SS G_CDS: -0.18 Total: -1.38 kcal Atomic # 8 Polarization: -0.60 SS G_CDS: -0.62 Total: -1.22 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: -5.88 Total: -7.35 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -5.46 -10.67 -16.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16978794_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.342 kcal (2) G-P(sol) polarization free energy of solvation -5.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds