Wall clock time and date at job start Mon Mar 8 2021 09:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47525 * 239.99614 * 2 1 3 5 5 Si 1.86298 * 109.46814 * 119.99733 * 2 1 3 6 6 C 1.86298 * 109.47353 * 299.99945 * 5 2 1 7 7 C 1.86300 * 109.46970 * 180.02562 * 5 2 1 8 8 O 1.63100 * 109.47342 * 60.00453 * 5 2 1 9 9 C 1.35993 * 114.00086 * 180.02562 * 8 5 2 10 10 C 1.38711 * 119.98525 * 90.00068 * 9 8 5 11 11 C 1.38091 * 120.02263 * 180.29722 * 10 9 8 12 12 C 1.38879 * 119.97421 * 359.46616 * 11 10 9 13 13 N 1.39989 * 120.01334 * 180.27946 * 12 11 10 14 14 C 1.38657 * 120.00436 * 30.38407 * 13 12 11 15 15 N 1.29708 * 124.94490 * 5.82338 * 14 13 12 16 16 C 1.32083 * 116.86521 * 179.77487 * 15 14 13 17 17 C 1.33355 * 114.58383 * 0.50657 * 16 15 14 18 18 C 1.50698 * 125.95161 * 179.75177 * 17 16 15 19 19 O 1.42899 * 109.47176 * 300.00287 * 18 17 16 20 20 Si 1.86305 * 109.46911 * 180.02562 * 18 17 16 21 21 H 1.48506 * 109.46716 * 60.00249 * 20 18 17 22 22 H 1.48494 * 109.47200 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47375 * 300.00392 * 20 18 17 24 24 S 1.70963 * 124.94880 * 186.12361 * 14 13 12 25 25 C 1.38881 * 119.96525 * 0.53164 * 12 11 10 26 26 C 1.38094 * 119.97667 * 359.72349 * 25 12 11 27 27 H 1.08995 * 109.47379 * 300.00300 * 1 2 3 28 28 H 1.09001 * 109.46843 * 60.00388 * 1 2 3 29 29 H 1.09007 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46608 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.46944 * 299.99795 * 3 2 1 32 32 H 1.09001 * 109.46957 * 59.99884 * 3 2 1 33 33 H 1.08994 * 109.47313 * 300.00538 * 4 2 1 34 34 H 1.09006 * 109.46685 * 59.99862 * 4 2 1 35 35 H 1.08993 * 109.47362 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47438 * 180.02562 * 6 5 2 37 37 H 1.08995 * 109.47611 * 300.00409 * 6 5 2 38 38 H 1.09002 * 109.47069 * 60.00459 * 6 5 2 39 39 H 1.09000 * 109.47565 * 299.99718 * 7 5 2 40 40 H 1.08994 * 109.47330 * 60.00314 * 7 5 2 41 41 H 1.09006 * 109.47407 * 180.02562 * 7 5 2 42 42 H 1.08004 * 119.98730 * 0.02562 * 10 9 8 43 43 H 1.08001 * 120.00732 * 179.69360 * 11 10 9 44 44 H 0.97009 * 119.99263 * 210.38321 * 13 12 11 45 45 H 1.07996 * 122.70262 * 180.24589 * 16 15 14 46 46 H 1.09001 * 109.47118 * 60.00906 * 18 17 16 47 47 H 0.96693 * 113.99987 * 300.00049 * 19 18 17 48 48 H 1.07992 * 120.00972 * 179.74363 * 25 12 11 49 49 H 1.07999 * 119.98544 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 14 2.1509 -0.8782 1.5212 6 6 1.5299 0.0001 3.0423 7 6 4.0139 -0.8775 1.5216 8 8 1.6073 -2.4159 1.5212 9 6 2.0081 -3.1442 2.5975 10 6 1.2311 -3.1686 3.7463 11 6 1.6404 -3.9030 4.8418 12 6 2.8248 -4.6262 4.7891 13 7 3.2376 -5.3757 5.8971 14 6 2.2948 -5.9256 6.7523 15 7 1.0123 -5.8983 6.5606 16 6 0.2592 -6.4772 7.4784 17 6 0.9361 -7.0089 8.4969 18 6 0.3367 -7.7225 9.6812 19 8 -0.5393 -6.8348 10.3789 20 14 1.6978 -8.2778 10.8257 21 1 2.4626 -7.0947 11.2958 22 1 1.1072 -8.9804 11.9930 23 1 2.6085 -9.2000 10.1011 24 16 2.6532 -6.7320 8.2166 25 6 3.6022 -4.6013 3.6385 26 6 3.1939 -3.8621 2.5458 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2493 36 1 1.8935 -0.5134 3.9323 37 1 1.8931 1.0277 3.0423 38 1 0.4399 0.0001 3.0423 39 1 4.3777 -1.3912 0.6317 40 1 4.3769 0.1502 1.5219 41 1 4.3773 -1.3917 2.4114 42 1 0.3078 -2.6095 3.7855 43 1 1.0377 -3.9179 5.7378 44 1 4.1832 -5.5102 6.0665 45 1 -0.8181 -6.5131 7.4115 46 1 -0.2250 -8.5906 9.3361 47 1 -0.1061 -6.0384 10.7150 48 1 4.5254 -5.1601 3.5982 49 1 3.7981 -3.8429 1.6508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16978794_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:33 Heat of formation + Delta-G solvation = -33.706281 kcal Electronic energy + Delta-G solvation = -28174.970845 eV Core-core repulsion = 24352.846514 eV Total energy + Delta-G solvation = -3822.124331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.42196 -40.51813 -38.60335 -37.68328 -36.87046 -35.77536 -32.16821 -31.52302 -29.76151 -29.16660 -29.07358 -27.86159 -27.40731 -26.79138 -24.85109 -23.87978 -23.19809 -21.00035 -20.50219 -20.00912 -18.87872 -18.56964 -17.77565 -17.06912 -16.71658 -16.41283 -16.34402 -16.11316 -15.97594 -15.51216 -15.36215 -15.03975 -14.87493 -14.79526 -14.46073 -14.26389 -14.12589 -13.93170 -13.71349 -13.50137 -13.39349 -13.23534 -13.15445 -12.96351 -12.94240 -12.90956 -12.45902 -12.40429 -12.38470 -12.36060 -11.96294 -11.87601 -11.73779 -11.63648 -11.57986 -10.77457 -10.50713 -10.40961 -10.24527 -10.11485 -9.96128 -9.72466 -8.44431 -0.38747 -0.14230 0.35206 0.37895 0.53196 1.12103 1.38733 1.39828 1.46679 1.68970 1.85615 1.89255 1.98477 2.01384 2.39317 2.80870 3.44954 3.58305 3.89455 3.90946 3.99085 4.08990 4.10048 4.23928 4.39947 4.45816 4.50053 4.60462 4.62789 4.67877 4.72480 4.74772 4.78332 4.79279 4.81516 4.82663 4.98881 5.03344 5.08040 5.08397 5.11544 5.19698 5.24703 5.33812 5.39184 5.43405 5.44546 5.52910 5.57232 5.62295 5.77198 6.03264 6.20765 6.65689 6.87154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.375 4.375 3 C -0.141 4.141 4 C -0.139 4.139 5 Si 1.297 2.703 6 C -0.513 4.513 7 C -0.508 4.508 8 O -0.572 6.572 9 C 0.102 3.898 10 C -0.143 4.143 11 C -0.109 4.109 12 C 0.137 3.863 13 N -0.623 5.623 14 C 0.299 3.701 15 N -0.557 5.557 16 C 0.103 3.897 17 C -0.296 4.296 18 C -0.020 4.020 19 O -0.546 6.546 20 Si 0.922 3.078 21 H -0.240 1.240 22 H -0.242 1.242 23 H -0.243 1.243 24 S 0.116 5.884 25 C -0.121 4.121 26 C -0.138 4.138 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.437 0.563 45 H 0.187 0.813 46 H 0.136 0.864 47 H 0.389 0.611 48 H 0.157 0.843 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 0.454 1.643 4.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.419 4.419 3 C -0.198 4.198 4 C -0.197 4.197 5 Si 1.431 2.569 6 C -0.615 4.615 7 C -0.611 4.611 8 O -0.527 6.527 9 C 0.057 3.943 10 C -0.162 4.162 11 C -0.131 4.131 12 C 0.039 3.961 13 N -0.256 5.256 14 C -0.070 4.070 15 N -0.282 5.282 16 C -0.048 4.048 17 C -0.419 4.419 18 C -0.135 4.135 19 O -0.353 6.353 20 Si 0.743 3.257 21 H -0.163 1.163 22 H -0.165 1.165 23 H -0.166 1.166 24 S 0.367 5.633 25 C -0.143 4.143 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.278 0.722 45 H 0.204 0.796 46 H 0.154 0.846 47 H 0.239 0.761 48 H 0.174 0.826 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.952 -0.404 1.922 5.327 hybrid contribution -0.620 0.866 -0.343 1.119 sum 4.331 0.462 1.579 4.633 Atomic orbital electron populations 1.21578 0.94244 1.01757 1.02155 1.25792 1.00403 1.03191 1.12496 1.21611 1.01493 0.94296 1.02437 1.21572 1.01324 0.99938 0.96816 0.76730 0.63755 0.51680 0.64776 1.27073 1.06949 1.09826 1.17673 1.26983 1.23757 1.05400 1.04962 1.83820 1.78448 1.45896 1.44491 1.18157 0.93739 0.96624 0.85743 1.21229 1.01033 1.01764 0.92178 1.21012 0.96875 0.95789 0.99380 1.17775 0.96451 0.94426 0.87401 1.41390 1.07072 1.52987 1.24157 1.23756 0.91079 0.97526 0.94673 1.66622 1.02057 1.27306 1.32180 1.21572 1.01477 0.94004 0.87731 1.25921 0.93518 1.16060 1.06364 1.24147 1.01438 0.95210 0.92661 1.86510 1.38190 1.36652 1.73927 0.85951 0.77105 0.82240 0.80408 1.16292 1.16524 1.16642 1.83985 1.08109 1.55085 1.16147 1.20919 1.01875 1.01214 0.90250 1.21271 0.96021 0.98649 0.99809 0.92027 0.92823 0.92766 0.91507 0.92713 0.91802 0.92691 0.92900 0.91659 0.91478 0.89866 0.90996 0.90409 0.89847 0.91026 0.84697 0.84886 0.72213 0.79575 0.84609 0.76147 0.82555 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.15 7.85 71.98 0.56 0.42 16 2 C -0.38 0.07 0.53 -10.79 -0.01 0.07 16 3 C -0.14 0.23 7.85 71.98 0.56 0.80 16 4 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 5 Si 1.30 -1.00 8.27 68.60 0.57 -0.43 16 6 C -0.51 -0.06 8.31 113.37 0.94 0.89 16 7 C -0.51 0.89 8.31 113.37 0.94 1.83 16 8 O -0.57 -2.14 8.52 -93.47 -0.80 -2.94 16 9 C 0.10 0.42 4.64 22.50 0.10 0.52 16 10 C -0.14 -0.69 8.76 22.35 0.20 -0.49 16 11 C -0.11 -0.57 8.76 22.39 0.20 -0.37 16 12 C 0.14 0.32 6.40 38.15 0.24 0.57 16 13 N -0.62 0.28 5.51 -190.61 -1.05 -0.77 16 14 C 0.30 0.80 7.76 179.30 1.39 2.20 16 15 N -0.56 -3.27 7.80 -201.98 -1.58 -4.85 16 16 C 0.10 0.30 11.22 83.55 0.94 1.24 16 17 C -0.30 -0.08 5.75 24.58 0.14 0.06 16 18 C -0.02 0.05 2.99 71.24 0.21 0.26 16 19 O -0.55 0.65 12.87 -148.98 -1.92 -1.27 16 20 Si 0.92 -1.97 26.34 68.60 1.81 -0.16 16 21 H -0.24 0.43 7.11 99.48 0.71 1.14 16 22 H -0.24 -0.04 7.11 99.48 0.71 0.67 16 23 H -0.24 0.22 7.11 99.48 0.71 0.93 16 24 S 0.12 -0.05 20.57 -56.49 -1.16 -1.21 16 25 C -0.12 0.06 9.95 22.39 0.22 0.29 16 26 C -0.14 -0.17 8.76 22.35 0.20 0.03 16 27 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 28 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.05 0.12 7.97 -2.38 -0.02 0.10 16 30 H 0.07 -0.23 7.79 -2.39 -0.02 -0.25 16 31 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 33 H 0.05 0.07 7.96 -2.39 -0.02 0.05 16 34 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 35 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 36 H 0.07 0.08 7.38 -2.39 -0.02 0.06 16 37 H 0.08 -0.13 7.79 -2.39 -0.02 -0.15 16 38 H 0.07 0.03 7.79 -2.39 -0.02 0.01 16 39 H 0.08 -0.19 7.79 -2.39 -0.02 -0.21 16 40 H 0.08 -0.26 7.79 -2.39 -0.02 -0.28 16 41 H 0.07 -0.10 7.38 -2.38 -0.02 -0.12 16 42 H 0.14 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.13 0.92 6.20 -2.91 -0.02 0.90 16 44 H 0.44 -2.89 8.93 -92.70 -0.83 -3.72 16 45 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 46 H 0.14 -0.60 7.96 -2.39 -0.02 -0.62 16 47 H 0.39 -2.75 8.70 -74.06 -0.64 -3.40 16 48 H 0.16 -0.99 8.06 -2.91 -0.02 -1.01 16 49 H 0.15 -0.34 8.06 -2.91 -0.02 -0.37 16 Total: 0.00 -12.47 408.33 3.53 -8.95 By element: Atomic # 1 Polarization: -6.36 SS G_CDS: 0.24 Total: -6.12 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 7.42 Total: 8.82 kcal Atomic # 7 Polarization: -2.99 SS G_CDS: -2.63 Total: -5.62 kcal Atomic # 8 Polarization: -1.50 SS G_CDS: -2.71 Total: -4.21 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.37 Total: -0.60 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.16 Total: -1.21 kcal Total: -12.47 3.53 -8.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16978794_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.759 kcal (2) G-P(sol) polarization free energy of solvation -12.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds