Wall clock time and date at job start Mon Mar 8 2021 09:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33357 * 125.95149 * 2 1 4 4 C 1.50706 * 122.70871 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47283 * 329.98079 * 4 3 2 6 6 Si 1.86301 * 109.47118 * 209.97690 * 4 3 2 7 7 H 1.48501 * 109.46901 * 60.00135 * 6 4 3 8 8 H 1.48494 * 109.47329 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47262 * 300.00436 * 6 4 3 10 10 N 1.32075 * 114.58283 * 180.02562 * 3 2 1 11 11 C 1.29708 * 116.86906 * 359.97438 * 10 3 2 12 12 N 1.38661 * 124.94803 * 180.02562 * 11 10 3 13 13 C 1.39989 * 119.99578 * 173.66598 * 12 11 10 14 14 C 1.38880 * 120.02133 * 321.40517 * 13 12 11 15 15 C 1.38086 * 119.97973 * 179.79326 * 14 13 12 16 16 C 1.38714 * 120.01934 * 0.46523 * 15 14 13 17 17 O 1.35993 * 119.98320 * 179.76674 * 16 15 14 18 18 Si 1.63102 * 114.00089 * 270.02432 * 17 16 15 19 19 C 1.86302 * 109.46872 * 299.99780 * 18 17 16 20 20 C 1.86298 * 109.47109 * 59.99747 * 18 17 16 21 21 C 1.86301 * 109.47202 * 179.97438 * 18 17 16 22 22 C 1.53002 * 109.46989 * 59.99998 * 21 18 17 23 23 C 1.52997 * 109.47115 * 179.97438 * 21 18 17 24 24 C 1.52996 * 109.47249 * 299.99982 * 21 18 17 25 25 C 1.38720 * 120.04169 * 359.78958 * 16 15 14 26 26 C 1.38087 * 120.01681 * 359.97438 * 25 16 15 27 27 S 1.70967 * 110.10234 * 0.27319 * 11 10 3 28 28 H 1.08999 * 109.47278 * 90.00208 * 1 2 3 29 29 H 1.09003 * 109.47008 * 210.00155 * 1 2 3 30 30 H 1.09003 * 109.46820 * 329.99981 * 1 2 3 31 31 H 1.09005 * 109.46733 * 89.98059 * 4 3 2 32 32 H 0.96704 * 113.99607 * 299.99536 * 5 4 3 33 33 H 0.96991 * 120.00157 * 353.66622 * 12 11 10 34 34 H 1.08004 * 120.00846 * 0.02597 * 14 13 12 35 35 H 1.07999 * 119.99276 * 180.21149 * 15 14 13 36 36 H 1.08994 * 109.47369 * 59.99867 * 19 18 17 37 37 H 1.09003 * 109.46741 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.46882 * 299.99843 * 19 18 17 39 39 H 1.08997 * 109.47273 * 60.00072 * 20 18 17 40 40 H 1.09004 * 109.46881 * 180.02562 * 20 18 17 41 41 H 1.09004 * 109.46991 * 300.00019 * 20 18 17 42 42 H 1.08997 * 109.47227 * 59.99959 * 22 21 18 43 43 H 1.08994 * 109.47251 * 180.02562 * 22 21 18 44 44 H 1.09003 * 109.47327 * 300.00086 * 22 21 18 45 45 H 1.09000 * 109.47314 * 60.00365 * 23 21 18 46 46 H 1.09004 * 109.47122 * 180.02562 * 23 21 18 47 47 H 1.08997 * 109.47252 * 300.00133 * 23 21 18 48 48 H 1.09004 * 109.47361 * 59.99836 * 24 21 18 49 49 H 1.08994 * 109.47477 * 179.97438 * 24 21 18 50 50 H 1.08999 * 109.47127 * 300.00345 * 24 21 18 51 51 H 1.07997 * 119.99133 * 179.97438 * 25 16 15 52 52 H 1.07997 * 120.01176 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2900 1.0795 0.0000 4 6 1.7416 2.4833 -0.0006 5 8 0.4819 2.5023 -0.6750 6 14 2.9331 3.6151 -0.8781 7 1 3.1142 3.1539 -2.2779 8 1 2.3930 4.9984 -0.8781 9 1 4.2421 3.5953 -0.1771 10 7 3.5848 0.8192 -0.0005 11 6 3.9314 -0.4307 -0.0005 12 7 5.2389 -0.8924 -0.0005 13 6 5.4977 -2.2616 0.1334 14 6 4.7307 -3.0325 0.9972 15 6 4.9839 -4.3839 1.1253 16 6 6.0102 -4.9696 0.3988 17 8 6.2619 -6.2997 0.5292 18 14 7.3350 -6.6598 1.7035 19 6 8.9602 -5.8261 1.3365 20 6 6.6857 -6.0599 3.3433 21 6 7.5845 -8.5047 1.7723 22 6 8.1175 -8.9979 0.4256 23 6 8.5916 -8.8425 2.8735 24 6 6.2497 -9.1889 2.0740 25 6 6.7803 -4.1994 -0.4603 26 6 6.5253 -2.8488 -0.5933 27 16 2.5414 -1.4260 -0.0073 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6087 2.8218 1.0270 32 1 0.5248 2.2124 -1.5966 33 1 5.9742 -0.2667 -0.0932 34 1 3.9340 -2.5759 1.5657 35 1 4.3853 -4.9842 1.7944 36 1 8.8140 -4.7467 1.2964 37 1 9.6772 -6.0664 2.1215 38 1 9.3401 -6.1771 0.3770 39 1 5.7349 -6.5476 3.5580 40 1 7.4031 -6.3002 4.1281 41 1 6.5395 -4.9804 3.3033 42 1 9.0684 -8.5105 0.2107 43 1 8.2630 -10.0773 0.4657 44 1 7.4004 -8.7572 -0.3592 45 1 8.2123 -8.4911 3.8330 46 1 8.7378 -9.9219 2.9135 47 1 9.5424 -8.3551 2.6582 48 1 5.5325 -8.9483 1.2892 49 1 6.3955 -10.2683 2.1138 50 1 5.8699 -8.8375 3.0333 51 1 7.5794 -4.6562 -1.0252 52 1 7.1252 -2.2491 -1.2619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16978794_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:45 Heat of formation + Delta-G solvation = -49.982124 kcal Electronic energy + Delta-G solvation = -30379.091771 eV Core-core repulsion = 26400.724047 eV Total energy + Delta-G solvation = -3978.367724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 380.150 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.41391 -40.92168 -38.85922 -37.63030 -36.95370 -35.79903 -32.87017 -32.26827 -30.12972 -29.43064 -29.17575 -28.63118 -27.96325 -27.48251 -25.69948 -25.07093 -23.86799 -22.95090 -20.72414 -20.59552 -19.61201 -19.02046 -18.24857 -17.68313 -17.49944 -16.89245 -16.59128 -16.48248 -16.07722 -15.83485 -15.47603 -15.22773 -14.96758 -14.86585 -14.79385 -14.62623 -14.30632 -14.23740 -13.87207 -13.84588 -13.78728 -13.59828 -13.49613 -13.38223 -13.33267 -13.26930 -13.01626 -13.01236 -12.73491 -12.53273 -12.47432 -12.22089 -12.02936 -12.02100 -11.80012 -11.73298 -11.72976 -11.49950 -10.68657 -10.62476 -10.37238 -10.20738 -10.16451 -10.06854 -9.56989 -8.46760 -0.32019 0.03673 0.16199 0.26754 0.79134 1.21559 1.27296 1.56130 1.63183 1.71481 1.77881 1.85933 1.87487 2.17620 2.25569 2.62184 3.32198 3.48788 3.72964 3.74316 3.99350 4.01443 4.05350 4.12314 4.21651 4.30865 4.32177 4.38101 4.53743 4.57089 4.60766 4.64356 4.65474 4.66795 4.72705 4.75744 4.76396 4.82600 4.85254 4.90706 5.01060 5.01471 5.05506 5.10996 5.13765 5.25476 5.27977 5.29455 5.31054 5.33264 5.37205 5.45192 5.51383 5.62181 6.01103 6.13222 6.45725 6.85958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.235 4.235 3 C 0.056 3.944 4 C -0.047 4.047 5 O -0.534 6.534 6 Si 0.981 3.019 7 H -0.260 1.260 8 H -0.261 1.261 9 H -0.246 1.246 10 N -0.532 5.532 11 C 0.299 3.701 12 N -0.634 5.634 13 C 0.139 3.861 14 C -0.132 4.132 15 C -0.121 4.121 16 C 0.117 3.883 17 O -0.558 6.558 18 Si 1.279 2.721 19 C -0.507 4.507 20 C -0.507 4.507 21 C -0.372 4.372 22 C -0.136 4.136 23 C -0.137 4.137 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.115 4.115 27 S 0.133 5.867 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.377 0.623 33 H 0.422 0.578 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.140 0.860 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -2.072 0.290 2.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.357 4.357 3 C -0.074 4.074 4 C -0.159 4.159 5 O -0.338 6.338 6 Si 0.802 3.198 7 H -0.184 1.184 8 H -0.185 1.185 9 H -0.169 1.169 10 N -0.257 5.257 11 C -0.071 4.071 12 N -0.266 5.266 13 C 0.043 3.957 14 C -0.154 4.154 15 C -0.140 4.140 16 C 0.073 3.927 17 O -0.512 6.512 18 Si 1.413 2.587 19 C -0.610 4.610 20 C -0.610 4.610 21 C -0.416 4.416 22 C -0.193 4.193 23 C -0.194 4.194 24 C -0.193 4.193 25 C -0.145 4.145 26 C -0.136 4.136 27 S 0.384 5.616 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.143 0.857 32 H 0.224 0.776 33 H 0.262 0.738 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.158 0.842 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.459 -2.203 0.233 2.653 hybrid contribution 0.396 0.403 0.040 0.566 sum 1.855 -1.800 0.274 2.599 Atomic orbital electron populations 1.20263 0.86140 1.03466 1.02888 1.25478 1.01828 0.93595 1.14819 1.20158 0.86502 0.97495 1.03223 1.24468 0.92654 0.95087 1.03732 1.86520 1.28762 1.89604 1.28939 0.85166 0.78058 0.77026 0.79514 1.18408 1.18503 1.16924 1.65909 1.17669 1.16713 1.25379 1.23191 0.91329 0.91930 1.00633 1.41140 1.02859 1.05551 1.77091 1.17639 0.98570 0.82241 0.97251 1.20959 1.02003 0.94014 0.98458 1.21123 0.98337 0.94184 1.00385 1.18022 0.95704 0.81669 0.97327 1.83839 1.73858 1.22355 1.71150 0.77043 0.58984 0.65274 0.57361 1.26999 1.19777 1.08507 1.05680 1.27005 1.07227 1.06718 1.20065 1.25739 0.98735 1.18767 0.98362 1.21539 1.00740 1.01540 0.95515 1.21560 0.98161 1.02272 0.97456 1.21538 0.95553 1.00788 1.01459 1.21159 1.00537 0.92986 0.99814 1.20778 0.99165 0.94537 0.99131 1.84330 0.95449 1.09199 1.72608 0.90930 0.92027 0.88695 0.85706 0.77576 0.73792 0.84631 0.84235 0.90993 0.90411 0.90720 0.90697 0.90414 0.90988 0.92564 0.92537 0.92160 0.92401 0.92281 0.92416 0.92150 0.92536 0.92545 0.84238 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.03 8.95 36.01 0.32 0.35 16 2 C -0.24 -0.33 6.50 -36.01 -0.23 -0.56 16 3 C 0.06 0.12 5.92 -84.19 -0.50 -0.37 16 4 C -0.05 -0.03 2.82 36.01 0.10 0.07 16 5 O -0.53 0.10 9.90 -35.23 -0.35 -0.25 16 6 Si 0.98 1.29 27.37 -169.99 -4.65 -3.37 16 7 H -0.26 -0.60 7.11 56.52 0.40 -0.20 16 8 H -0.26 -0.50 7.11 56.52 0.40 -0.10 16 9 H -0.25 -0.72 7.11 56.52 0.40 -0.31 16 10 N -0.53 -1.73 8.94 -11.35 -0.10 -1.83 16 11 C 0.30 0.64 7.93 -87.61 -0.69 -0.06 16 12 N -0.63 -0.27 5.49 -11.60 -0.06 -0.33 16 13 C 0.14 0.01 6.15 -83.66 -0.51 -0.51 16 14 C -0.13 -0.01 8.18 -39.40 -0.32 -0.34 16 15 C -0.12 0.02 8.76 -39.46 -0.35 -0.33 16 16 C 0.12 0.02 4.64 -39.23 -0.18 -0.16 16 17 O -0.56 -0.10 8.52 -19.72 -0.17 -0.27 16 18 Si 1.28 -1.86 8.27 -169.99 -1.41 -3.26 16 19 C -0.51 0.67 8.31 101.05 0.84 1.51 16 20 C -0.51 0.58 8.31 101.05 0.84 1.42 16 21 C -0.37 0.37 0.53 -90.62 -0.05 0.32 16 22 C -0.14 0.09 7.85 37.16 0.29 0.39 16 23 C -0.14 0.18 7.85 37.16 0.29 0.47 16 24 C -0.14 0.09 7.85 37.16 0.29 0.38 16 25 C -0.13 0.07 8.76 -39.46 -0.35 -0.27 16 26 C -0.11 0.11 9.96 -39.40 -0.39 -0.29 16 27 S 0.13 0.15 19.60 -107.50 -2.11 -1.96 16 28 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 29 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 30 H 0.09 -0.01 6.62 -51.93 -0.34 -0.36 16 31 H 0.13 -0.03 7.96 -51.93 -0.41 -0.44 16 32 H 0.38 -1.08 8.68 45.56 0.40 -0.68 16 33 H 0.42 -0.41 8.95 -40.82 -0.37 -0.77 16 34 H 0.14 -0.02 6.18 -52.42 -0.32 -0.35 16 35 H 0.14 -0.21 8.06 -52.49 -0.42 -0.63 16 36 H 0.07 -0.08 7.38 -51.93 -0.38 -0.47 16 37 H 0.08 -0.13 7.79 -51.93 -0.40 -0.53 16 38 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 39 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 40 H 0.08 -0.12 7.79 -51.93 -0.40 -0.52 16 41 H 0.07 -0.06 7.37 -51.93 -0.38 -0.45 16 42 H 0.06 -0.08 7.80 -51.93 -0.40 -0.48 16 43 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 44 H 0.06 -0.03 7.97 -51.93 -0.41 -0.44 16 45 H 0.06 -0.11 7.79 -51.93 -0.40 -0.52 16 46 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 47 H 0.06 -0.11 7.79 -51.93 -0.40 -0.52 16 48 H 0.06 -0.03 7.97 -51.93 -0.41 -0.44 16 49 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 50 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 51 H 0.14 -0.28 8.06 -52.49 -0.42 -0.70 16 52 H 0.14 -0.37 8.06 -52.49 -0.42 -0.80 16 LS Contribution 424.97 15.07 6.40 6.40 Total: 0.00 -5.33 424.97 -11.10 -16.43 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: -8.06 Total: -13.60 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.60 Total: 2.03 kcal Atomic # 7 Polarization: -2.00 SS G_CDS: -0.17 Total: -2.16 kcal Atomic # 8 Polarization: -0.01 SS G_CDS: -0.52 Total: -0.53 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -6.06 Total: -6.63 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.11 Total: -1.96 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -5.33 -11.10 -16.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16978794_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.549 kcal (2) G-P(sol) polarization free energy of solvation -5.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds