Wall clock time and date at job start Mon Mar 8 2021 09:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33357 * 125.95149 * 2 1 4 4 C 1.50706 * 122.70871 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47283 * 329.98079 * 4 3 2 6 6 Si 1.86301 * 109.47118 * 209.97690 * 4 3 2 7 7 H 1.48501 * 109.46901 * 60.00135 * 6 4 3 8 8 H 1.48494 * 109.47329 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47262 * 300.00436 * 6 4 3 10 10 N 1.32075 * 114.58283 * 180.02562 * 3 2 1 11 11 C 1.29708 * 116.86906 * 359.97438 * 10 3 2 12 12 N 1.38661 * 124.94803 * 180.02562 * 11 10 3 13 13 C 1.39989 * 119.99578 * 173.66598 * 12 11 10 14 14 C 1.38880 * 120.02133 * 321.40517 * 13 12 11 15 15 C 1.38086 * 119.97973 * 179.79326 * 14 13 12 16 16 C 1.38714 * 120.01934 * 0.46523 * 15 14 13 17 17 O 1.35993 * 119.98320 * 179.76674 * 16 15 14 18 18 Si 1.63102 * 114.00089 * 270.02432 * 17 16 15 19 19 C 1.86302 * 109.46872 * 299.99780 * 18 17 16 20 20 C 1.86298 * 109.47109 * 59.99747 * 18 17 16 21 21 C 1.86301 * 109.47202 * 179.97438 * 18 17 16 22 22 C 1.53002 * 109.46989 * 59.99998 * 21 18 17 23 23 C 1.52997 * 109.47115 * 179.97438 * 21 18 17 24 24 C 1.52996 * 109.47249 * 299.99982 * 21 18 17 25 25 C 1.38720 * 120.04169 * 359.78958 * 16 15 14 26 26 C 1.38087 * 120.01681 * 359.97438 * 25 16 15 27 27 S 1.70967 * 110.10234 * 0.27319 * 11 10 3 28 28 H 1.08999 * 109.47278 * 90.00208 * 1 2 3 29 29 H 1.09003 * 109.47008 * 210.00155 * 1 2 3 30 30 H 1.09003 * 109.46820 * 329.99981 * 1 2 3 31 31 H 1.09005 * 109.46733 * 89.98059 * 4 3 2 32 32 H 0.96704 * 113.99607 * 299.99536 * 5 4 3 33 33 H 0.96991 * 120.00157 * 353.66622 * 12 11 10 34 34 H 1.08004 * 120.00846 * 0.02597 * 14 13 12 35 35 H 1.07999 * 119.99276 * 180.21149 * 15 14 13 36 36 H 1.08994 * 109.47369 * 59.99867 * 19 18 17 37 37 H 1.09003 * 109.46741 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.46882 * 299.99843 * 19 18 17 39 39 H 1.08997 * 109.47273 * 60.00072 * 20 18 17 40 40 H 1.09004 * 109.46881 * 180.02562 * 20 18 17 41 41 H 1.09004 * 109.46991 * 300.00019 * 20 18 17 42 42 H 1.08997 * 109.47227 * 59.99959 * 22 21 18 43 43 H 1.08994 * 109.47251 * 180.02562 * 22 21 18 44 44 H 1.09003 * 109.47327 * 300.00086 * 22 21 18 45 45 H 1.09000 * 109.47314 * 60.00365 * 23 21 18 46 46 H 1.09004 * 109.47122 * 180.02562 * 23 21 18 47 47 H 1.08997 * 109.47252 * 300.00133 * 23 21 18 48 48 H 1.09004 * 109.47361 * 59.99836 * 24 21 18 49 49 H 1.08994 * 109.47477 * 179.97438 * 24 21 18 50 50 H 1.08999 * 109.47127 * 300.00345 * 24 21 18 51 51 H 1.07997 * 119.99133 * 179.97438 * 25 16 15 52 52 H 1.07997 * 120.01176 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2900 1.0795 0.0000 4 6 1.7416 2.4833 -0.0006 5 8 0.4819 2.5023 -0.6750 6 14 2.9331 3.6151 -0.8781 7 1 3.1142 3.1539 -2.2779 8 1 2.3930 4.9984 -0.8781 9 1 4.2421 3.5953 -0.1771 10 7 3.5848 0.8192 -0.0005 11 6 3.9314 -0.4307 -0.0005 12 7 5.2389 -0.8924 -0.0005 13 6 5.4977 -2.2616 0.1334 14 6 4.7307 -3.0325 0.9972 15 6 4.9839 -4.3839 1.1253 16 6 6.0102 -4.9696 0.3988 17 8 6.2619 -6.2997 0.5292 18 14 7.3350 -6.6598 1.7035 19 6 8.9602 -5.8261 1.3365 20 6 6.6857 -6.0599 3.3433 21 6 7.5845 -8.5047 1.7723 22 6 8.1175 -8.9979 0.4256 23 6 8.5916 -8.8425 2.8735 24 6 6.2497 -9.1889 2.0740 25 6 6.7803 -4.1994 -0.4603 26 6 6.5253 -2.8488 -0.5933 27 16 2.5414 -1.4260 -0.0073 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6087 2.8218 1.0270 32 1 0.5248 2.2124 -1.5966 33 1 5.9742 -0.2667 -0.0932 34 1 3.9340 -2.5759 1.5657 35 1 4.3853 -4.9842 1.7944 36 1 8.8140 -4.7467 1.2964 37 1 9.6772 -6.0664 2.1215 38 1 9.3401 -6.1771 0.3770 39 1 5.7349 -6.5476 3.5580 40 1 7.4031 -6.3002 4.1281 41 1 6.5395 -4.9804 3.3033 42 1 9.0684 -8.5105 0.2107 43 1 8.2630 -10.0773 0.4657 44 1 7.4004 -8.7572 -0.3592 45 1 8.2123 -8.4911 3.8330 46 1 8.7378 -9.9219 2.9135 47 1 9.5424 -8.3551 2.6582 48 1 5.5325 -8.9483 1.2892 49 1 6.3955 -10.2683 2.1138 50 1 5.8699 -8.8375 3.0333 51 1 7.5794 -4.6562 -1.0252 52 1 7.1252 -2.2491 -1.2619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16978794_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:44 Heat of formation + Delta-G solvation = -40.254130 kcal Electronic energy + Delta-G solvation = -30378.669934 eV Core-core repulsion = 26400.724047 eV Total energy + Delta-G solvation = -3977.945886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 380.150 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.42531 -40.93752 -38.84027 -37.62607 -36.86459 -35.78702 -32.88427 -32.20608 -30.11331 -29.33715 -29.07662 -28.62372 -27.85831 -27.40026 -25.72007 -25.10351 -23.82770 -22.93398 -20.76668 -20.51407 -19.63572 -18.97031 -18.26794 -17.70629 -17.50815 -16.90171 -16.55650 -16.48147 -15.99016 -15.93787 -15.44818 -15.21796 -14.87662 -14.86486 -14.78444 -14.57621 -14.25015 -14.14045 -13.86868 -13.79134 -13.73006 -13.54469 -13.39917 -13.32958 -13.26164 -13.18049 -12.95542 -12.91627 -12.75880 -12.49630 -12.40099 -12.28057 -12.19836 -11.96412 -11.83900 -11.67125 -11.64521 -11.48802 -10.78260 -10.53213 -10.40944 -10.17444 -10.11783 -10.08008 -9.58315 -8.48582 -0.35982 -0.00392 0.19546 0.26066 0.73043 1.16072 1.34070 1.48133 1.59198 1.66559 1.73717 1.76556 2.00031 2.04822 2.35132 2.67274 3.31382 3.51079 3.79417 3.83219 4.06364 4.10495 4.10929 4.13769 4.30447 4.31534 4.36853 4.46136 4.56356 4.60019 4.72767 4.75413 4.76817 4.78286 4.80993 4.82620 4.82888 4.87013 4.92600 4.99847 5.08026 5.08840 5.09252 5.16162 5.20373 5.33749 5.35148 5.35662 5.36341 5.40593 5.44679 5.57140 5.62585 5.63309 6.05163 6.15628 6.57930 6.81102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.239 4.239 3 C 0.041 3.959 4 C -0.037 4.037 5 O -0.536 6.536 6 Si 1.011 2.989 7 H -0.275 1.275 8 H -0.268 1.268 9 H -0.272 1.272 10 N -0.556 5.556 11 C 0.288 3.712 12 N -0.630 5.630 13 C 0.129 3.871 14 C -0.138 4.138 15 C -0.127 4.127 16 C 0.108 3.892 17 O -0.568 6.568 18 Si 1.301 2.699 19 C -0.512 4.512 20 C -0.514 4.514 21 C -0.376 4.376 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.112 4.112 27 S 0.145 5.855 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.388 0.612 33 H 0.427 0.573 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.051 0.949 50 H 0.062 0.938 51 H 0.153 0.847 52 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 -2.291 0.247 2.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.361 4.361 3 C -0.089 4.089 4 C -0.150 4.150 5 O -0.342 6.342 6 Si 0.836 3.164 7 H -0.200 1.200 8 H -0.193 1.193 9 H -0.197 1.197 10 N -0.281 5.281 11 C -0.082 4.082 12 N -0.263 5.263 13 C 0.033 3.967 14 C -0.160 4.160 15 C -0.146 4.146 16 C 0.064 3.936 17 O -0.522 6.522 18 Si 1.435 2.565 19 C -0.615 4.615 20 C -0.617 4.617 21 C -0.419 4.419 22 C -0.197 4.197 23 C -0.199 4.199 24 C -0.198 4.198 25 C -0.149 4.149 26 C -0.133 4.133 27 S 0.395 5.605 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.151 0.849 32 H 0.238 0.762 33 H 0.267 0.733 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.081 0.919 51 H 0.171 0.829 52 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.366 -2.430 0.182 2.794 hybrid contribution 0.452 0.426 0.036 0.622 sum 1.818 -2.005 0.218 2.715 Atomic orbital electron populations 1.20309 0.84889 1.03634 1.03696 1.25748 1.02699 0.93482 1.14180 1.20379 0.86400 0.98299 1.03828 1.24340 0.92539 0.94082 1.04077 1.86498 1.28137 1.89600 1.29952 0.84738 0.76826 0.76590 0.78220 1.19977 1.19304 1.19669 1.65923 1.18430 1.17435 1.26349 1.23409 0.92137 0.92014 1.00660 1.41177 1.02531 1.05853 1.76763 1.17774 0.99096 0.82078 0.97722 1.21005 1.02139 0.94197 0.98656 1.21247 0.98521 0.94220 1.00656 1.18186 0.95999 0.81788 0.97649 1.83836 1.74311 1.22431 1.71662 0.76653 0.58610 0.64477 0.56750 1.27037 1.19905 1.08484 1.06052 1.27077 1.07492 1.06564 1.20539 1.25814 0.98577 1.19258 0.98297 1.21582 1.01097 1.01373 0.95673 1.21616 0.98522 1.02084 0.97704 1.21582 0.95829 1.00618 1.01721 1.21362 1.00788 0.93095 0.99701 1.20977 0.98796 0.94617 0.98891 1.84239 0.94933 1.08890 1.72393 0.89735 0.91498 0.88822 0.84887 0.76226 0.73262 0.84733 0.83369 0.91051 0.89959 0.90423 0.90607 0.89958 0.91274 0.91784 0.93002 0.92498 0.91739 0.92802 0.91643 0.92505 0.92978 0.91899 0.82905 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.10 8.95 71.24 0.64 0.74 16 2 C -0.24 -0.65 6.50 24.58 0.16 -0.49 16 3 C 0.04 0.19 5.92 41.42 0.25 0.43 16 4 C -0.04 -0.05 2.82 71.24 0.20 0.15 16 5 O -0.54 0.48 9.90 -148.98 -1.47 -0.99 16 6 Si 1.01 3.46 27.37 68.60 1.88 5.34 16 7 H -0.27 -1.53 7.11 99.48 0.71 -0.82 16 8 H -0.27 -1.17 7.11 99.48 0.71 -0.46 16 9 H -0.27 -2.04 7.11 99.48 0.71 -1.34 16 10 N -0.56 -4.02 8.94 -189.81 -1.70 -5.71 16 11 C 0.29 1.38 7.93 179.30 1.42 2.81 16 12 N -0.63 -0.80 5.49 -190.60 -1.05 -1.85 16 13 C 0.13 0.03 6.15 38.15 0.23 0.27 16 14 C -0.14 -0.07 8.18 22.39 0.18 0.11 16 15 C -0.13 0.01 8.76 22.35 0.20 0.21 16 16 C 0.11 0.04 4.64 22.50 0.10 0.14 16 17 O -0.57 -0.18 8.52 -93.47 -0.80 -0.98 16 18 Si 1.30 -4.03 8.27 68.60 0.57 -3.46 16 19 C -0.51 1.64 8.31 113.37 0.94 2.58 16 20 C -0.51 1.25 8.31 113.37 0.94 2.20 16 21 C -0.38 0.74 0.53 -10.80 -0.01 0.73 16 22 C -0.14 0.18 7.85 71.98 0.56 0.74 16 23 C -0.14 0.40 7.85 71.98 0.56 0.97 16 24 C -0.14 0.14 7.85 71.98 0.56 0.71 16 25 C -0.13 0.21 8.76 22.35 0.20 0.41 16 26 C -0.11 0.25 9.96 22.39 0.22 0.47 16 27 S 0.14 0.35 19.60 -56.49 -1.11 -0.76 16 28 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.09 -0.09 6.62 -2.39 -0.02 -0.11 16 31 H 0.13 -0.08 7.96 -2.38 -0.02 -0.09 16 32 H 0.39 -2.44 8.68 -74.05 -0.64 -3.09 16 33 H 0.43 -0.58 8.95 -92.71 -0.83 -1.41 16 34 H 0.14 0.03 6.18 -2.95 -0.02 0.02 16 35 H 0.15 -0.40 8.06 -2.91 -0.02 -0.43 16 36 H 0.07 -0.20 7.38 -2.39 -0.02 -0.22 16 37 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 38 H 0.08 -0.29 7.79 -2.38 -0.02 -0.31 16 39 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 40 H 0.08 -0.28 7.79 -2.38 -0.02 -0.30 16 41 H 0.07 -0.12 7.37 -2.38 -0.02 -0.13 16 42 H 0.06 -0.19 7.80 -2.39 -0.02 -0.21 16 43 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.06 -0.04 7.97 -2.39 -0.02 -0.06 16 45 H 0.06 -0.27 7.79 -2.39 -0.02 -0.29 16 46 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 47 H 0.06 -0.29 7.79 -2.39 -0.02 -0.31 16 48 H 0.06 -0.02 7.97 -2.38 -0.02 -0.04 16 49 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 50 H 0.06 -0.16 7.79 -2.39 -0.02 -0.18 16 51 H 0.15 -0.74 8.06 -2.91 -0.02 -0.76 16 52 H 0.15 -0.98 8.06 -2.91 -0.02 -1.00 16 Total: 0.00 -11.99 424.97 3.90 -8.08 By element: Atomic # 1 Polarization: -13.05 SS G_CDS: 0.21 Total: -12.84 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 7.38 Total: 13.17 kcal Atomic # 7 Polarization: -4.82 SS G_CDS: -2.74 Total: -7.56 kcal Atomic # 8 Polarization: 0.30 SS G_CDS: -2.27 Total: -1.97 kcal Atomic # 14 Polarization: -0.56 SS G_CDS: 2.44 Total: 1.88 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.11 Total: -0.76 kcal Total: -11.99 3.90 -8.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16978794_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.170 kcal (2) G-P(sol) polarization free energy of solvation -11.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds