Wall clock time and date at job start Mon Mar 8 2021 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.38840 * 120.33545 * 299.71732 * 4 2 1 6 6 C 1.38341 * 118.50845 * 179.76322 * 5 4 2 7 7 C 1.39100 * 119.09395 * 0.51098 * 6 5 4 8 8 N 1.39012 * 119.70415 * 179.74969 * 7 6 5 9 9 C 1.47548 * 110.99856 * 59.85000 * 8 7 6 10 10 C 1.54579 * 107.31697 * 123.21779 * 9 8 7 11 11 C 1.53746 * 102.82897 * 20.93910 * 10 9 8 12 12 C 1.52316 * 116.25080 * 197.16763 * 11 10 9 13 13 C 1.54051 * 86.61485 * 216.62254 * 12 11 10 14 14 O 1.42903 * 113.63816 * 138.96502 * 13 12 11 15 15 C 1.52318 * 116.24228 * 94.85539 * 11 10 9 16 16 C 1.48116 * 110.99938 * 180.84034 * 8 7 6 17 17 N 1.32425 * 120.59288 * 359.72781 * 7 6 5 18 18 C 1.31939 * 121.61942 * 0.02562 * 17 7 6 19 19 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 20 20 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 21 21 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 22 22 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 23 23 H 1.08004 * 120.74362 * 0.02562 * 5 4 2 24 24 H 1.08001 * 120.45648 * 180.26164 * 6 5 4 25 25 H 1.08989 * 109.87675 * 242.65131 * 9 8 7 26 26 H 1.09001 * 109.87461 * 3.64892 * 9 8 7 27 27 H 1.09000 * 110.73662 * 139.27035 * 10 9 8 28 28 H 1.09000 * 110.74616 * 262.60240 * 10 9 8 29 29 H 1.08997 * 113.69169 * 331.05487 * 12 11 10 30 30 H 1.09005 * 113.68804 * 102.19190 * 12 11 10 31 31 H 1.08996 * 113.56800 * 269.70726 * 13 12 11 32 32 H 0.96700 * 113.99851 * 82.16151 * 14 13 12 33 33 H 1.08999 * 113.69111 * 257.80925 * 15 11 10 34 34 H 1.09003 * 113.69699 * 28.85934 * 15 11 10 35 35 H 1.09006 * 110.40610 * 333.89719 * 16 8 7 36 36 H 1.09001 * 110.40556 * 96.31551 * 16 8 7 37 37 H 1.08009 * 119.57310 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6050 -2.0412 -1.4542 6 6 2.0824 -2.6547 -2.5985 7 6 2.8776 -1.9247 -3.4758 8 7 3.3685 -2.5302 -4.6269 9 6 2.2666 -3.0066 -5.4847 10 6 2.4417 -2.3429 -6.8697 11 6 3.9275 -1.9478 -6.8735 12 6 4.3482 -0.9184 -7.9143 13 6 5.6628 -1.7124 -8.0351 14 8 6.1260 -1.8526 -9.3797 15 6 4.8864 -2.9391 -7.5200 16 6 4.2039 -1.5883 -5.4071 17 7 3.1709 -0.6580 -3.2246 18 6 2.7255 -0.0461 -2.1439 19 1 -0.3934 0.4416 -0.7651 20 1 1.7924 -0.5138 0.8900 21 1 1.5877 2.4585 -1.2243 22 1 1.5613 2.4680 1.2084 23 1 0.9888 -2.5840 -0.7527 24 1 1.8444 -3.6875 -2.8059 25 1 2.3167 -4.0908 -5.5843 26 1 1.3087 -2.7183 -5.0518 27 1 2.2293 -3.0541 -7.6680 28 1 1.8075 -1.4609 -6.9582 29 1 3.7407 -0.9368 -8.8191 30 1 4.4784 0.0854 -7.5097 31 1 6.4419 -1.3718 -7.3532 32 1 6.6142 -1.0858 -9.7095 33 1 5.4442 -3.5406 -6.8023 34 1 4.4321 -3.5357 -8.3112 35 1 3.9060 -0.5593 -5.2055 36 1 5.2587 -1.7322 -5.1728 37 1 2.9855 0.9880 -1.9714 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17058094_13915762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:45:40 Heat of formation + Delta-G solvation = 6.599293 kcal Electronic energy + Delta-G solvation = -20016.968491 eV Core-core repulsion = 16955.173935 eV Total energy + Delta-G solvation = -3061.794556 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23731 -40.98946 -38.68028 -37.63944 -35.76636 -33.64105 -32.63747 -30.72919 -28.67111 -26.96964 -26.42792 -24.68390 -23.77443 -22.65226 -21.90262 -19.64141 -18.69400 -18.52020 -18.20941 -17.46657 -16.95248 -16.46966 -16.27096 -16.11866 -15.58836 -15.35358 -14.76142 -14.59212 -14.38221 -14.33074 -14.16500 -13.94410 -13.49749 -13.23222 -13.10376 -12.70343 -12.57106 -12.41615 -12.03907 -11.86332 -11.54529 -11.26854 -10.98558 -10.78174 -10.71924 -10.64226 -10.39732 -9.16313 -5.02929 -0.02523 0.23885 1.20346 1.52320 1.90161 2.37674 2.71883 3.08109 3.25699 3.29358 3.39489 3.50853 3.59374 3.63035 3.77618 3.81331 3.91633 4.07436 4.11148 4.13112 4.22593 4.34779 4.46572 4.58176 4.64976 4.72174 4.74033 4.76258 4.78640 4.85448 4.91011 4.96133 5.08312 5.15917 5.22416 5.28926 5.42354 5.52550 6.09940 6.31151 6.70232 6.89408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.065 4.065 3 Si 0.680 3.320 4 C -0.200 4.200 5 C -0.026 4.026 6 C -0.181 4.181 7 C 0.312 3.688 8 N -0.469 5.469 9 C 0.049 3.951 10 C -0.124 4.124 11 C -0.093 4.093 12 C -0.153 4.153 13 C 0.077 3.923 14 O -0.560 6.560 15 C -0.110 4.110 16 C 0.065 3.935 17 N -0.515 5.515 18 C 0.132 3.868 19 H 0.376 0.624 20 H 0.120 0.880 21 H -0.258 1.258 22 H -0.253 1.253 23 H 0.140 0.860 24 H 0.139 0.861 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.379 0.621 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 0.866 -0.423 1.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.175 4.175 3 Si 0.581 3.419 4 C -0.203 4.203 5 C -0.052 4.052 6 C -0.204 4.204 7 C 0.081 3.919 8 N -0.186 5.186 9 C -0.076 4.076 10 C -0.162 4.162 11 C -0.094 4.094 12 C -0.191 4.191 13 C 0.018 3.982 14 O -0.366 6.366 15 C -0.147 4.147 16 C -0.061 4.061 17 N -0.229 5.229 18 C -0.025 4.025 19 H 0.223 0.777 20 H 0.138 0.862 21 H -0.183 1.183 22 H -0.178 1.178 23 H 0.158 0.842 24 H 0.157 0.843 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.226 0.774 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.198 0.799 -0.299 1.471 hybrid contribution -1.687 0.423 -0.077 1.741 sum -0.489 1.222 -0.376 1.369 Atomic orbital electron populations 1.86608 1.17697 1.79933 1.49328 1.24856 0.83885 1.10830 0.97946 0.95086 0.91690 0.74468 0.80670 1.21148 1.03213 0.96362 0.99602 1.21348 0.95001 0.93394 0.95476 1.21631 1.01515 1.01623 0.95604 1.20036 0.90608 0.87817 0.93473 1.60833 1.18461 1.34110 1.05165 1.23000 0.91673 1.01321 0.91619 1.22570 0.95545 1.01094 0.97036 1.21739 0.95090 0.98007 0.94584 1.23461 0.98370 0.98204 0.99043 1.23482 0.93598 0.97303 0.83859 1.86533 1.76192 1.45136 1.28733 1.22867 0.96383 0.95923 0.99542 1.22736 0.98015 0.96597 0.88727 1.67501 1.25434 1.08998 1.20924 1.22363 0.92424 0.99159 0.88586 0.77667 0.86216 1.18270 1.17811 0.84225 0.84301 0.89142 0.91694 0.89701 0.90751 0.88839 0.90778 0.89983 0.77386 0.90182 0.88914 0.89102 0.89570 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.31 12.78 -35.23 -0.45 -0.76 16 2 C -0.06 0.05 2.83 36.00 0.10 0.15 16 3 Si 0.68 -0.94 29.82 -169.99 -5.07 -6.01 16 4 C -0.20 0.00 5.39 -104.46 -0.56 -0.56 16 5 C -0.03 0.00 9.77 -39.32 -0.38 -0.39 16 6 C -0.18 -0.12 9.04 -39.22 -0.35 -0.47 16 7 C 0.31 0.57 6.16 -155.00 -0.95 -0.39 16 8 N -0.47 -0.51 5.20 -170.40 -0.89 -1.40 16 9 C 0.05 -0.02 6.47 -2.64 -0.02 -0.04 16 10 C -0.12 0.11 6.34 -25.51 -0.16 -0.05 16 11 C -0.09 0.05 0.93 -154.60 -0.14 -0.10 16 12 C -0.15 0.12 7.28 -26.53 -0.19 -0.08 16 13 C 0.08 -0.02 5.11 -25.68 -0.13 -0.15 16 14 O -0.56 -0.50 13.67 -35.23 -0.48 -0.98 16 15 C -0.11 0.00 7.21 -26.53 -0.19 -0.20 16 16 C 0.07 0.04 5.67 -2.90 -0.02 0.02 16 17 N -0.52 -1.13 8.15 -12.43 -0.10 -1.23 16 18 C 0.13 0.08 9.84 -17.57 -0.17 -0.10 16 19 H 0.38 -0.78 8.70 45.56 0.40 -0.39 16 20 H 0.12 -0.18 7.96 -51.93 -0.41 -0.59 16 21 H -0.26 -0.15 7.11 56.52 0.40 0.25 16 22 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 23 H 0.14 -0.14 8.06 -52.48 -0.42 -0.56 16 24 H 0.14 -0.10 7.99 -52.49 -0.42 -0.52 16 25 H 0.09 -0.11 8.14 -51.94 -0.42 -0.53 16 26 H 0.06 -0.03 7.15 -51.93 -0.37 -0.41 16 27 H 0.08 -0.13 7.99 -51.93 -0.42 -0.54 16 28 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 29 H 0.09 -0.03 8.14 -51.93 -0.42 -0.46 16 30 H 0.07 -0.09 8.12 -51.93 -0.42 -0.51 16 31 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.38 -1.18 9.12 45.56 0.42 -0.76 16 33 H 0.08 0.02 8.12 -51.93 -0.42 -0.40 16 34 H 0.09 0.05 8.05 -51.93 -0.42 -0.36 16 35 H 0.09 0.14 6.51 -51.93 -0.34 -0.20 16 36 H 0.09 0.06 8.07 -51.93 -0.42 -0.36 16 37 H 0.16 -0.22 4.88 -52.48 -0.26 -0.47 16 LS Contribution 299.18 15.07 4.51 4.51 Total: 0.00 -6.05 299.18 -10.06 -16.11 By element: Atomic # 1 Polarization: -3.50 SS G_CDS: -4.39 Total: -7.89 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.18 Total: -2.34 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -0.99 Total: -2.63 kcal Atomic # 8 Polarization: -0.81 SS G_CDS: -0.93 Total: -1.74 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: -5.07 Total: -6.01 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -6.05 -10.06 -16.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17058094_13915762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.705 kcal (2) G-P(sol) polarization free energy of solvation -6.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds