Wall clock time and date at job start Mon Mar 8 2021 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.38840 * 120.33545 * 299.71732 * 4 2 1 6 6 C 1.38341 * 118.50845 * 179.76322 * 5 4 2 7 7 C 1.39100 * 119.09395 * 0.51098 * 6 5 4 8 8 N 1.39012 * 119.70415 * 179.74969 * 7 6 5 9 9 C 1.47548 * 110.99856 * 59.85000 * 8 7 6 10 10 C 1.54579 * 107.31697 * 123.21779 * 9 8 7 11 11 C 1.53746 * 102.82897 * 20.93910 * 10 9 8 12 12 C 1.52316 * 116.25080 * 197.16763 * 11 10 9 13 13 C 1.54051 * 86.61485 * 216.62254 * 12 11 10 14 14 O 1.42903 * 113.63816 * 138.96502 * 13 12 11 15 15 C 1.52318 * 116.24228 * 94.85539 * 11 10 9 16 16 C 1.48116 * 110.99938 * 180.84034 * 8 7 6 17 17 N 1.32425 * 120.59288 * 359.72781 * 7 6 5 18 18 C 1.31939 * 121.61942 * 0.02562 * 17 7 6 19 19 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 20 20 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 21 21 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 22 22 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 23 23 H 1.08004 * 120.74362 * 0.02562 * 5 4 2 24 24 H 1.08001 * 120.45648 * 180.26164 * 6 5 4 25 25 H 1.08989 * 109.87675 * 242.65131 * 9 8 7 26 26 H 1.09001 * 109.87461 * 3.64892 * 9 8 7 27 27 H 1.09000 * 110.73662 * 139.27035 * 10 9 8 28 28 H 1.09000 * 110.74616 * 262.60240 * 10 9 8 29 29 H 1.08997 * 113.69169 * 331.05487 * 12 11 10 30 30 H 1.09005 * 113.68804 * 102.19190 * 12 11 10 31 31 H 1.08996 * 113.56800 * 269.70726 * 13 12 11 32 32 H 0.96700 * 113.99851 * 82.16151 * 14 13 12 33 33 H 1.08999 * 113.69111 * 257.80925 * 15 11 10 34 34 H 1.09003 * 113.69699 * 28.85934 * 15 11 10 35 35 H 1.09006 * 110.40610 * 333.89719 * 16 8 7 36 36 H 1.09001 * 110.40556 * 96.31551 * 16 8 7 37 37 H 1.08009 * 119.57310 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6050 -2.0412 -1.4542 6 6 2.0824 -2.6547 -2.5985 7 6 2.8776 -1.9247 -3.4758 8 7 3.3685 -2.5302 -4.6269 9 6 2.2666 -3.0066 -5.4847 10 6 2.4417 -2.3429 -6.8697 11 6 3.9275 -1.9478 -6.8735 12 6 4.3482 -0.9184 -7.9143 13 6 5.6628 -1.7124 -8.0351 14 8 6.1260 -1.8526 -9.3797 15 6 4.8864 -2.9391 -7.5200 16 6 4.2039 -1.5883 -5.4071 17 7 3.1709 -0.6580 -3.2246 18 6 2.7255 -0.0461 -2.1439 19 1 -0.3934 0.4416 -0.7651 20 1 1.7924 -0.5138 0.8900 21 1 1.5877 2.4585 -1.2243 22 1 1.5613 2.4680 1.2084 23 1 0.9888 -2.5840 -0.7527 24 1 1.8444 -3.6875 -2.8059 25 1 2.3167 -4.0908 -5.5843 26 1 1.3087 -2.7183 -5.0518 27 1 2.2293 -3.0541 -7.6680 28 1 1.8075 -1.4609 -6.9582 29 1 3.7407 -0.9368 -8.8191 30 1 4.4784 0.0854 -7.5097 31 1 6.4419 -1.3718 -7.3532 32 1 6.6142 -1.0858 -9.7095 33 1 5.4442 -3.5406 -6.8023 34 1 4.4321 -3.5357 -8.3112 35 1 3.9060 -0.5593 -5.2055 36 1 5.2587 -1.7322 -5.1728 37 1 2.9855 0.9880 -1.9714 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17058094_13915762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:45:39 Heat of formation + Delta-G solvation = 7.158923 kcal Electronic energy + Delta-G solvation = -20016.944223 eV Core-core repulsion = 16955.173935 eV Total energy + Delta-G solvation = -3061.770288 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.23785 -40.98109 -38.67074 -37.63747 -35.76961 -33.65636 -32.62956 -30.71319 -28.67207 -26.94358 -26.41017 -24.68546 -23.76060 -22.63577 -21.89133 -19.62731 -18.68518 -18.51305 -18.21304 -17.48194 -16.93533 -16.45628 -16.24839 -16.09348 -15.57060 -15.34816 -14.75131 -14.59912 -14.41516 -14.32249 -14.15384 -13.93349 -13.49691 -13.22629 -13.07879 -12.68162 -12.56027 -12.38655 -12.10554 -11.85584 -11.51891 -11.22703 -10.99827 -10.79395 -10.69133 -10.62317 -10.42920 -9.18310 -4.94831 -0.04208 0.22625 1.27245 1.56765 1.93015 2.38103 2.70306 3.12538 3.29835 3.37741 3.42598 3.54158 3.64379 3.66124 3.81626 3.84807 3.93851 4.08611 4.14926 4.16594 4.27763 4.39306 4.53541 4.61901 4.68752 4.72982 4.77163 4.79405 4.82466 4.89291 4.90675 4.98339 5.10419 5.16447 5.25780 5.31913 5.43582 5.53218 6.07152 6.44012 6.86612 6.88706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.068 4.068 3 Si 0.757 3.243 4 C -0.196 4.196 5 C -0.030 4.030 6 C -0.185 4.185 7 C 0.297 3.703 8 N -0.476 5.476 9 C 0.050 3.950 10 C -0.122 4.122 11 C -0.087 4.087 12 C -0.147 4.147 13 C 0.076 3.924 14 O -0.581 6.581 15 C -0.112 4.112 16 C 0.069 3.931 17 N -0.534 5.534 18 C 0.123 3.877 19 H 0.386 0.614 20 H 0.130 0.870 21 H -0.283 1.283 22 H -0.298 1.298 23 H 0.151 0.849 24 H 0.150 0.850 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.394 0.606 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 0.721 -0.362 1.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.177 4.177 3 Si 0.662 3.338 4 C -0.200 4.200 5 C -0.056 4.056 6 C -0.208 4.208 7 C 0.065 3.935 8 N -0.193 5.193 9 C -0.075 4.075 10 C -0.160 4.160 11 C -0.088 4.088 12 C -0.185 4.185 13 C 0.017 3.983 14 O -0.389 6.389 15 C -0.149 4.149 16 C -0.057 4.057 17 N -0.248 5.248 18 C -0.034 4.034 19 H 0.235 0.765 20 H 0.148 0.852 21 H -0.209 1.209 22 H -0.226 1.226 23 H 0.169 0.831 24 H 0.168 0.832 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.190 0.645 -0.256 1.377 hybrid contribution -1.700 0.493 -0.074 1.772 sum -0.510 1.138 -0.330 1.290 Atomic orbital electron populations 1.86581 1.18370 1.80289 1.50163 1.24998 0.83392 1.11329 0.98025 0.94171 0.90496 0.72354 0.76759 1.21205 1.02816 0.96370 0.99589 1.21543 0.94923 0.93571 0.95513 1.21783 1.01282 1.02128 0.95558 1.20244 0.91204 0.88023 0.93983 1.60881 1.18985 1.34129 1.05347 1.23042 0.91278 1.01728 0.91499 1.22563 0.95153 1.01170 0.97108 1.21654 0.95243 0.97913 0.93998 1.23401 0.98016 0.98340 0.98737 1.23545 0.93995 0.97097 0.83680 1.86486 1.76625 1.46524 1.29267 1.22855 0.96636 0.96084 0.99362 1.22653 0.97709 0.96061 0.89289 1.67501 1.26129 1.09430 1.21695 1.22640 0.92515 0.99849 0.88400 0.76518 0.85246 1.20923 1.22595 0.83086 0.83243 0.88391 0.91714 0.88949 0.90956 0.89132 0.90301 0.89088 0.75601 0.90560 0.89463 0.90061 0.90009 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.44 12.78 -148.98 -1.90 -2.35 16 2 C -0.07 0.14 2.83 71.23 0.20 0.34 16 3 Si 0.76 -2.10 29.82 68.60 2.05 -0.06 16 4 C -0.20 0.07 5.39 -19.76 -0.11 -0.04 16 5 C -0.03 0.00 9.77 22.44 0.22 0.22 16 6 C -0.19 -0.22 9.04 22.50 0.20 -0.02 16 7 C 0.30 1.17 6.16 133.04 0.82 1.99 16 8 N -0.48 -1.22 5.20 -693.02 -3.60 -4.82 16 9 C 0.05 -0.04 6.47 86.72 0.56 0.52 16 10 C -0.12 0.21 6.34 31.38 0.20 0.41 16 11 C -0.09 0.07 0.93 -52.24 -0.05 0.02 16 12 C -0.15 0.21 7.28 30.72 0.22 0.44 16 13 C 0.08 -0.03 5.11 31.28 0.16 0.13 16 14 O -0.58 -1.04 13.67 -148.98 -2.04 -3.07 16 15 C -0.11 -0.05 7.21 30.72 0.22 0.17 16 16 C 0.07 0.12 5.67 86.24 0.49 0.61 16 17 N -0.53 -2.53 8.15 -193.25 -1.57 -4.10 16 18 C 0.12 0.14 9.84 84.64 0.83 0.97 16 19 H 0.39 -1.68 8.70 -74.06 -0.64 -2.32 16 20 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 21 H -0.28 -0.36 7.11 99.48 0.71 0.34 16 22 H -0.30 -1.43 7.11 99.48 0.71 -0.72 16 23 H 0.15 -0.42 8.06 -2.91 -0.02 -0.44 16 24 H 0.15 -0.26 7.99 -2.91 -0.02 -0.28 16 25 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.06 -0.06 7.15 -2.39 -0.02 -0.07 16 27 H 0.09 -0.29 7.99 -2.39 -0.02 -0.31 16 28 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.08 -0.19 8.12 -2.38 -0.02 -0.20 16 31 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.39 -2.49 9.12 -74.06 -0.68 -3.17 16 33 H 0.08 0.08 8.12 -2.39 -0.02 0.06 16 34 H 0.09 0.14 8.05 -2.39 -0.02 0.12 16 35 H 0.08 0.31 6.51 -2.38 -0.02 0.29 16 36 H 0.08 0.18 8.07 -2.39 -0.02 0.16 16 37 H 0.17 -0.51 4.88 -2.91 -0.01 -0.52 16 Total: 0.00 -13.67 299.18 -3.29 -16.97 By element: Atomic # 1 Polarization: -8.13 SS G_CDS: -0.19 Total: -8.32 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 3.98 Total: 5.75 kcal Atomic # 7 Polarization: -3.74 SS G_CDS: -5.18 Total: -8.92 kcal Atomic # 8 Polarization: -1.48 SS G_CDS: -3.94 Total: -5.42 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 2.05 Total: -0.06 kcal Total: -13.67 -3.29 -16.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17058094_13915762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.124 kcal (2) G-P(sol) polarization free energy of solvation -13.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds