Wall clock time and date at job start Mon Mar 8 2021 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33328 * 125.95182 * 2 1 4 4 C 1.50696 * 122.71029 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47268 * 29.99578 * 4 3 2 6 6 Si 1.86301 * 109.47428 * 149.99441 * 4 3 2 7 7 N 1.32120 * 114.57898 * 179.75049 * 3 2 1 8 8 C 1.29690 * 116.86884 * 0.48002 * 7 3 2 9 9 N 1.38606 * 124.95205 * 179.81219 * 8 7 3 10 10 C 1.48621 * 110.99757 * 297.18407 * 9 8 7 11 11 C 1.55150 * 103.36362 * 200.78334 * 10 9 8 12 12 C 1.53711 * 102.65255 * 36.63370 * 11 10 9 13 13 C 1.52810 * 115.41826 * 208.87101 * 12 11 10 14 14 C 1.53961 * 86.78342 * 217.78538 * 13 12 11 15 15 O 1.42904 * 113.58441 * 270.03083 * 14 13 12 16 16 C 1.52979 * 115.43416 * 108.16875 * 12 11 10 17 17 C 1.48168 * 111.00136 * 179.72059 * 9 8 7 18 18 S 1.70968 * 110.09650 * 359.54179 * 8 7 3 19 19 H 1.09001 * 109.47388 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.47315 * 299.97167 * 1 2 3 21 21 H 1.08996 * 109.47382 * 59.97446 * 1 2 3 22 22 H 1.09007 * 109.46932 * 269.99670 * 4 3 2 23 23 H 0.96701 * 114.00516 * 180.02562 * 5 4 3 24 24 H 1.48499 * 110.00229 * 300.00314 * 6 4 3 25 25 H 1.48505 * 109.99560 * 61.31765 * 6 4 3 26 26 H 1.08995 * 110.63914 * 319.25022 * 10 9 8 27 27 H 1.08997 * 110.63867 * 82.15485 * 10 9 8 28 28 H 1.08993 * 110.77697 * 278.34226 * 11 10 9 29 29 H 1.09006 * 110.77625 * 154.92091 * 11 10 9 30 30 H 1.09000 * 113.66056 * 103.31246 * 13 12 11 31 31 H 1.08994 * 113.66251 * 332.25711 * 13 12 11 32 32 H 1.09002 * 113.58427 * 139.30139 * 14 13 12 33 33 H 0.96695 * 113.99595 * 178.56744 * 15 14 13 34 34 H 1.09004 * 113.66694 * 27.75548 * 16 12 11 35 35 H 1.09004 * 113.71145 * 256.65535 * 16 12 11 36 36 H 1.08998 * 110.01860 * 26.37312 * 17 9 8 37 37 H 1.09005 * 110.05645 * 265.00435 * 17 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4815 2.5019 0.6746 6 14 2.9324 3.6147 0.8788 7 7 3.5849 0.8188 0.0052 8 6 3.9315 -0.4310 0.0000 9 7 5.2384 -0.8926 0.0004 10 6 5.9541 -0.4664 -1.2304 11 6 7.1331 -1.4704 -1.3255 12 6 6.5014 -2.7798 -0.8264 13 6 7.4638 -3.7577 -0.1536 14 6 6.6673 -4.8807 -0.8428 15 8 5.5741 -5.3683 -0.0621 16 6 6.2536 -3.8409 -1.9001 17 6 5.2784 -2.3737 0.0001 18 16 2.5412 -1.4261 0.0000 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5134 0.8903 21 1 -0.3634 0.5142 -0.8897 22 1 1.6088 2.8217 -1.0270 23 1 0.0689 3.3757 0.7128 24 1 3.1217 3.1636 2.2809 25 1 4.2369 3.6284 0.1692 26 1 5.3049 -0.5525 -2.1017 27 1 6.3227 0.5541 -1.1266 28 1 7.9540 -1.1654 -0.6767 29 1 7.4715 -1.5730 -2.3566 30 1 7.3860 -3.7699 0.9335 31 1 8.4918 -3.6714 -0.5052 32 1 7.2938 -5.6799 -1.2388 33 1 5.0565 -6.0587 -0.4984 34 1 6.9406 -3.7780 -2.7441 35 1 5.2104 -3.9195 -2.2063 36 1 4.3714 -2.7714 -0.4552 37 1 5.3772 -2.7452 1.0202 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17058094_15704122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:45:44 Heat of formation + Delta-G solvation = 11.468093 kcal Electronic energy + Delta-G solvation = -20801.304346 eV Core-core repulsion = 17673.335545 eV Total energy + Delta-G solvation = -3127.968801 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99895 -40.89735 -38.69470 -37.43033 -35.73161 -33.22460 -31.47031 -29.63037 -28.39335 -27.06519 -25.61675 -24.86878 -22.93443 -22.49391 -20.46228 -19.56504 -19.23816 -18.36181 -18.01610 -17.31659 -16.89415 -16.26121 -16.15685 -15.60904 -15.45156 -15.21368 -14.86701 -14.44786 -14.27659 -14.05805 -14.00765 -13.72470 -13.63757 -13.19913 -13.09483 -12.96197 -12.85226 -12.50100 -12.14642 -11.92929 -11.77689 -11.57164 -11.31246 -10.93779 -10.77300 -10.61043 -10.30153 -9.94408 -8.97026 -4.81141 -0.19688 0.22972 0.72313 1.34605 1.81242 1.91745 2.19345 2.39490 2.91645 3.14381 3.18930 3.24556 3.45376 3.58584 3.79540 3.94185 4.04376 4.09114 4.16211 4.26476 4.30544 4.36786 4.39534 4.52459 4.63690 4.64535 4.67536 4.76569 4.83407 4.84505 4.87807 4.98817 5.03205 5.04737 5.09297 5.33687 5.34051 5.67320 6.55882 6.60872 6.79213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.201 4.201 3 C 0.073 3.927 4 C -0.034 4.034 5 O -0.545 6.545 6 Si 0.710 3.290 7 N -0.488 5.488 8 C 0.224 3.776 9 N -0.427 5.427 10 C 0.049 3.951 11 C -0.112 4.112 12 C -0.086 4.086 13 C -0.117 4.117 14 C 0.078 3.922 15 O -0.550 6.550 16 C -0.161 4.161 17 C 0.064 3.936 18 S 0.101 5.899 19 H 0.059 0.941 20 H 0.093 0.907 21 H 0.076 0.924 22 H 0.080 0.920 23 H 0.386 0.614 24 H -0.262 1.262 25 H -0.250 1.250 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.383 0.617 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 -0.599 -3.955 4.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.322 4.322 3 C -0.057 4.057 4 C -0.146 4.146 5 O -0.352 6.352 6 Si 0.610 3.390 7 N -0.209 5.209 8 C -0.146 4.146 9 N -0.148 5.148 10 C -0.078 4.078 11 C -0.150 4.150 12 C -0.086 4.086 13 C -0.155 4.155 14 C 0.019 3.981 15 O -0.356 6.356 16 C -0.199 4.199 17 C -0.064 4.064 18 S 0.353 5.647 19 H 0.078 0.922 20 H 0.112 0.888 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.234 0.766 24 H -0.187 1.187 25 H -0.175 1.175 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.231 0.769 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.052 -1.213 -2.566 3.027 hybrid contribution -0.868 -0.457 -1.234 1.576 sum 0.185 -1.670 -3.800 4.154 Atomic orbital electron populations 1.20191 0.85986 1.01730 1.04226 1.25562 1.01982 0.93347 1.11344 1.19156 0.86642 0.95461 1.04432 1.23956 0.93116 0.96009 1.01503 1.86416 1.33893 1.35811 1.79034 0.96262 0.78878 0.84453 0.79385 1.65741 1.16840 1.17624 1.20713 1.25241 0.94314 0.91731 1.03267 1.61256 1.06510 1.10287 1.36784 1.23391 0.94803 1.01008 0.88621 1.22513 0.97389 0.92837 1.02292 1.21879 0.95540 0.94538 0.96684 1.23010 0.97908 0.92962 1.01571 1.22789 0.88801 0.94636 0.91880 1.86469 1.44393 1.59316 1.45381 1.23750 1.02838 0.96233 0.97047 1.22825 0.97503 0.83497 1.02542 1.84150 0.98611 1.11318 1.70668 0.92245 0.88843 0.90499 0.90195 0.76565 1.18698 1.17506 0.92415 0.88520 0.89560 0.89651 0.89839 0.88009 0.91075 0.76938 0.88520 0.90653 0.91608 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.10 8.91 36.00 0.32 0.22 16 2 C -0.20 -0.82 6.50 -36.03 -0.23 -1.06 16 3 C 0.07 0.37 5.96 -84.19 -0.50 -0.13 16 4 C -0.03 -0.06 2.93 36.00 0.11 0.04 16 5 O -0.55 -0.08 9.80 -35.23 -0.35 -0.43 16 6 Si 0.71 1.33 32.08 -169.99 -5.45 -4.12 16 7 N -0.49 -3.19 8.89 -11.36 -0.10 -3.29 16 8 C 0.22 1.15 6.65 -87.68 -0.58 0.57 16 9 N -0.43 -1.59 5.37 -171.54 -0.92 -2.51 16 10 C 0.05 0.08 6.48 -1.73 -0.01 0.07 16 11 C -0.11 0.07 6.46 -25.22 -0.16 -0.09 16 12 C -0.09 0.04 1.11 -154.21 -0.17 -0.14 16 13 C -0.12 0.11 7.16 -26.33 -0.19 -0.08 16 14 C 0.08 -0.11 5.26 -25.74 -0.14 -0.25 16 15 O -0.55 0.24 12.98 -35.23 -0.46 -0.22 16 16 C -0.16 0.28 7.15 -26.24 -0.19 0.09 16 17 C 0.06 0.11 5.10 -3.08 -0.02 0.09 16 18 S 0.10 0.34 20.63 -107.50 -2.22 -1.87 16 19 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 20 H 0.09 0.18 6.74 -51.93 -0.35 -0.17 16 21 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 22 H 0.08 0.00 7.96 -51.92 -0.41 -0.41 16 23 H 0.39 -1.94 8.74 45.56 0.40 -1.54 16 24 H -0.26 -1.65 7.11 56.52 0.40 -1.25 16 25 H -0.25 -1.36 7.11 56.52 0.40 -0.96 16 26 H 0.06 0.10 7.99 -51.93 -0.41 -0.32 16 27 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 -0.06 8.11 -51.93 -0.42 -0.48 16 29 H 0.08 -0.18 7.85 -51.93 -0.41 -0.59 16 30 H 0.08 0.02 7.88 -51.93 -0.41 -0.38 16 31 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 32 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 33 H 0.38 -1.60 9.12 45.56 0.42 -1.18 16 34 H 0.10 -0.28 7.98 -51.93 -0.41 -0.69 16 35 H 0.07 -0.10 7.87 -51.93 -0.41 -0.51 16 36 H 0.07 0.11 5.56 -47.18 -0.26 -0.15 16 37 H 0.10 0.26 7.75 -51.93 -0.40 -0.14 16 LS Contribution 307.89 15.07 4.64 4.64 Total: 0.00 -8.41 307.89 -11.02 -19.44 By element: Atomic # 1 Polarization: -6.58 SS G_CDS: -4.40 Total: -10.98 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.77 Total: -0.65 kcal Atomic # 7 Polarization: -4.78 SS G_CDS: -1.02 Total: -5.80 kcal Atomic # 8 Polarization: 0.16 SS G_CDS: -0.80 Total: -0.65 kcal Atomic # 14 Polarization: 1.33 SS G_CDS: -5.45 Total: -4.12 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -2.22 Total: -1.87 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -8.41 -11.02 -19.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17058094_15704122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.904 kcal (2) G-P(sol) polarization free energy of solvation -8.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds