Wall clock time and date at job start Mon Mar 8 2021 06:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33328 * 125.95182 * 2 1 4 4 C 1.50696 * 122.71029 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47268 * 29.99578 * 4 3 2 6 6 Si 1.86301 * 109.47428 * 149.99441 * 4 3 2 7 7 N 1.32120 * 114.57898 * 179.75049 * 3 2 1 8 8 C 1.29690 * 116.86884 * 0.48002 * 7 3 2 9 9 N 1.38606 * 124.95205 * 179.81219 * 8 7 3 10 10 C 1.48621 * 110.99757 * 297.18407 * 9 8 7 11 11 C 1.55150 * 103.36362 * 200.78334 * 10 9 8 12 12 C 1.53711 * 102.65255 * 36.63370 * 11 10 9 13 13 C 1.52810 * 115.41826 * 208.87101 * 12 11 10 14 14 C 1.53961 * 86.78342 * 217.78538 * 13 12 11 15 15 O 1.42904 * 113.58441 * 270.03083 * 14 13 12 16 16 C 1.52979 * 115.43416 * 108.16875 * 12 11 10 17 17 C 1.48168 * 111.00136 * 179.72059 * 9 8 7 18 18 S 1.70968 * 110.09650 * 359.54179 * 8 7 3 19 19 H 1.09001 * 109.47388 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.47315 * 299.97167 * 1 2 3 21 21 H 1.08996 * 109.47382 * 59.97446 * 1 2 3 22 22 H 1.09007 * 109.46932 * 269.99670 * 4 3 2 23 23 H 0.96701 * 114.00516 * 180.02562 * 5 4 3 24 24 H 1.48499 * 110.00229 * 300.00314 * 6 4 3 25 25 H 1.48505 * 109.99560 * 61.31765 * 6 4 3 26 26 H 1.08995 * 110.63914 * 319.25022 * 10 9 8 27 27 H 1.08997 * 110.63867 * 82.15485 * 10 9 8 28 28 H 1.08993 * 110.77697 * 278.34226 * 11 10 9 29 29 H 1.09006 * 110.77625 * 154.92091 * 11 10 9 30 30 H 1.09000 * 113.66056 * 103.31246 * 13 12 11 31 31 H 1.08994 * 113.66251 * 332.25711 * 13 12 11 32 32 H 1.09002 * 113.58427 * 139.30139 * 14 13 12 33 33 H 0.96695 * 113.99595 * 178.56744 * 15 14 13 34 34 H 1.09004 * 113.66694 * 27.75548 * 16 12 11 35 35 H 1.09004 * 113.71145 * 256.65535 * 16 12 11 36 36 H 1.08998 * 110.01860 * 26.37312 * 17 9 8 37 37 H 1.09005 * 110.05645 * 265.00435 * 17 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4815 2.5019 0.6746 6 14 2.9324 3.6147 0.8788 7 7 3.5849 0.8188 0.0052 8 6 3.9315 -0.4310 0.0000 9 7 5.2384 -0.8926 0.0004 10 6 5.9541 -0.4664 -1.2304 11 6 7.1331 -1.4704 -1.3255 12 6 6.5014 -2.7798 -0.8264 13 6 7.4638 -3.7577 -0.1536 14 6 6.6673 -4.8807 -0.8428 15 8 5.5741 -5.3683 -0.0621 16 6 6.2536 -3.8409 -1.9001 17 6 5.2784 -2.3737 0.0001 18 16 2.5412 -1.4261 0.0000 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5134 0.8903 21 1 -0.3634 0.5142 -0.8897 22 1 1.6088 2.8217 -1.0270 23 1 0.0689 3.3757 0.7128 24 1 3.1217 3.1636 2.2809 25 1 4.2369 3.6284 0.1692 26 1 5.3049 -0.5525 -2.1017 27 1 6.3227 0.5541 -1.1266 28 1 7.9540 -1.1654 -0.6767 29 1 7.4715 -1.5730 -2.3566 30 1 7.3860 -3.7699 0.9335 31 1 8.4918 -3.6714 -0.5052 32 1 7.2938 -5.6799 -1.2388 33 1 5.0565 -6.0587 -0.4984 34 1 6.9406 -3.7780 -2.7441 35 1 5.2104 -3.9195 -2.2063 36 1 4.3714 -2.7714 -0.4552 37 1 5.3772 -2.7452 1.0202 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17058094_15704122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:45:43 Heat of formation + Delta-G solvation = 9.466988 kcal Electronic energy + Delta-G solvation = -20801.391120 eV Core-core repulsion = 17673.335545 eV Total energy + Delta-G solvation = -3128.055576 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.06454 -41.08521 -38.74562 -37.47320 -35.70491 -33.38141 -31.56127 -29.77201 -28.47845 -26.93856 -25.79678 -25.03046 -23.00239 -22.55282 -20.58584 -19.67896 -19.37479 -18.38810 -18.01012 -17.44964 -17.00111 -16.36312 -16.25322 -15.69840 -15.54900 -15.20522 -15.01484 -14.49400 -14.37053 -14.33480 -14.08720 -13.80417 -13.67847 -13.35826 -13.16864 -13.07062 -12.83902 -12.51353 -12.40388 -12.11123 -11.82526 -11.55992 -11.24258 -11.15579 -10.82270 -10.65074 -10.54740 -10.14860 -9.21272 -5.04059 -0.48210 -0.03908 0.45457 1.12811 1.56311 1.64314 2.01289 2.15638 3.02701 3.09660 3.21640 3.28645 3.48485 3.67709 3.84671 3.86729 3.91964 3.96218 4.12509 4.18295 4.23651 4.30870 4.38170 4.51833 4.61220 4.70941 4.72332 4.76333 4.80494 4.81585 4.88182 4.91043 5.00212 5.09342 5.18114 5.23856 5.27741 5.45867 6.49846 6.85105 6.89933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.210 4.210 3 C 0.045 3.955 4 C -0.029 4.029 5 O -0.551 6.551 6 Si 0.810 3.190 7 N -0.523 5.523 8 C 0.208 3.792 9 N -0.445 5.445 10 C 0.048 3.952 11 C -0.103 4.103 12 C -0.088 4.088 13 C -0.119 4.119 14 C 0.078 3.922 15 O -0.572 6.572 16 C -0.151 4.151 17 C 0.066 3.934 18 S 0.121 5.879 19 H 0.068 0.932 20 H 0.092 0.908 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.409 0.591 24 H -0.326 1.326 25 H -0.303 1.303 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.397 0.603 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -1.116 -5.223 5.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.331 4.331 3 C -0.084 4.084 4 C -0.142 4.142 5 O -0.362 6.362 6 Si 0.718 3.282 7 N -0.245 5.245 8 C -0.161 4.161 9 N -0.167 5.167 10 C -0.079 4.079 11 C -0.141 4.141 12 C -0.089 4.089 13 C -0.157 4.157 14 C 0.019 3.981 15 O -0.380 6.380 16 C -0.189 4.189 17 C -0.061 4.061 18 S 0.373 5.627 19 H 0.087 0.913 20 H 0.111 0.889 21 H 0.107 0.893 22 H 0.123 0.877 23 H 0.262 0.738 24 H -0.256 1.256 25 H -0.232 1.232 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.247 0.753 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.458 -1.712 -3.854 4.242 hybrid contribution -0.654 -0.312 -0.746 1.040 sum -0.197 -2.023 -4.600 5.029 Atomic orbital electron populations 1.20243 0.84248 1.02503 1.04689 1.25974 1.03205 0.93242 1.10725 1.19703 0.86449 0.97294 1.04975 1.23911 0.93567 0.93863 1.02832 1.86372 1.32870 1.38104 1.78810 0.95491 0.76274 0.82504 0.73889 1.65805 1.18055 1.18688 1.21972 1.25518 0.95288 0.91990 1.03280 1.61269 1.06266 1.11421 1.37728 1.23412 0.95522 1.01069 0.87851 1.22519 0.96217 0.91756 1.03595 1.21906 0.94780 0.95032 0.97206 1.23087 0.98867 0.93186 1.00530 1.22855 0.88659 0.95024 0.91594 1.86434 1.45026 1.60108 1.46438 1.23741 1.03091 0.95020 0.97043 1.22810 0.98690 0.82411 1.02150 1.83954 0.97687 1.10833 1.70226 0.91335 0.88924 0.89274 0.87717 0.73778 1.25578 1.23189 0.92485 0.89836 0.89625 0.87439 0.91633 0.86210 0.89458 0.75286 0.86681 0.91048 0.91658 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 8.91 71.23 0.63 0.49 16 2 C -0.21 -1.78 6.50 24.57 0.16 -1.62 16 3 C 0.05 0.50 5.96 41.40 0.25 0.74 16 4 C -0.03 -0.10 2.93 71.23 0.21 0.11 16 5 O -0.55 0.43 9.80 -148.98 -1.46 -1.03 16 6 Si 0.81 4.16 32.08 68.60 2.20 6.36 16 7 N -0.52 -7.87 8.89 -189.86 -1.69 -9.56 16 8 C 0.21 2.52 6.65 179.32 1.19 3.71 16 9 N -0.45 -4.15 5.37 -696.62 -3.74 -7.89 16 10 C 0.05 0.23 6.48 86.71 0.56 0.79 16 11 C -0.10 0.14 6.46 31.57 0.20 0.34 16 12 C -0.09 0.07 1.11 -51.99 -0.06 0.01 16 13 C -0.12 0.25 7.16 30.86 0.22 0.47 16 14 C 0.08 -0.28 5.26 31.24 0.16 -0.12 16 15 O -0.57 0.45 12.98 -148.98 -1.93 -1.48 16 16 C -0.15 0.68 7.15 30.91 0.22 0.90 16 17 C 0.07 0.32 5.10 86.09 0.44 0.75 16 18 S 0.12 0.94 20.63 -56.49 -1.17 -0.22 16 19 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 20 H 0.09 0.28 6.74 -2.38 -0.02 0.26 16 21 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 22 H 0.11 -0.14 7.96 -2.38 -0.02 -0.16 16 23 H 0.41 -4.88 8.74 -74.06 -0.65 -5.53 16 24 H -0.33 -5.15 7.11 99.48 0.71 -4.44 16 25 H -0.30 -4.16 7.11 99.48 0.71 -3.45 16 26 H 0.06 0.26 7.99 -2.39 -0.02 0.24 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 -0.10 8.11 -2.39 -0.02 -0.12 16 29 H 0.11 -0.61 7.85 -2.38 -0.02 -0.63 16 30 H 0.06 0.11 7.88 -2.39 -0.02 0.09 16 31 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.40 -3.37 9.12 -74.06 -0.68 -4.04 16 34 H 0.11 -0.92 7.98 -2.38 -0.02 -0.93 16 35 H 0.07 -0.24 7.87 -2.39 -0.02 -0.25 16 36 H 0.07 0.29 5.56 -5.41 -0.03 0.26 16 37 H 0.09 0.63 7.75 -2.38 -0.02 0.61 16 Total: 0.00 -22.29 307.89 -3.79 -26.09 By element: Atomic # 1 Polarization: -18.65 SS G_CDS: -0.20 Total: -18.85 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 4.20 Total: 6.59 kcal Atomic # 7 Polarization: -12.02 SS G_CDS: -5.43 Total: -17.45 kcal Atomic # 8 Polarization: 0.87 SS G_CDS: -3.39 Total: -2.52 kcal Atomic # 14 Polarization: 4.16 SS G_CDS: 2.20 Total: 6.36 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -1.17 Total: -0.22 kcal Total: -22.29 -3.79 -26.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17058094_15704122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.555 kcal (2) G-P(sol) polarization free energy of solvation -22.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds