Wall clock time and date at job start Mon Mar 8 2021 06:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86305 * 109.46717 * 2 1 4 4 C 1.50692 * 109.47366 * 240.00289 * 2 1 3 5 5 C 1.37984 * 120.32892 * 119.97363 * 4 2 1 6 6 N 1.32013 * 120.90036 * 179.76429 * 5 4 2 7 7 C 1.32343 * 121.64571 * 0.53021 * 6 5 4 8 8 N 1.39140 * 119.71781 * 179.75480 * 7 6 5 9 9 C 1.48635 * 111.00405 * 119.84913 * 8 7 6 10 10 C 1.54630 * 104.64892 * 201.42414 * 9 8 7 11 11 C 1.53352 * 104.66831 * 23.70748 * 10 9 8 12 12 C 1.52793 * 115.65790 * 129.28098 * 11 10 9 13 13 C 1.53961 * 86.78091 * 92.78366 * 12 11 10 14 14 O 1.42904 * 113.58441 * 270.02121 * 13 12 11 15 15 C 1.52968 * 115.55952 * 230.21299 * 11 10 9 16 16 C 1.48795 * 111.00026 * 4.21622 * 8 7 6 17 17 C 1.39339 * 120.56220 * 359.47172 * 7 6 5 18 18 F 1.35098 * 120.47481 * 180.28067 * 17 7 6 19 19 C 1.38442 * 119.05744 * 0.25742 * 17 7 6 20 20 H 0.96698 * 113.99748 * 299.99732 * 1 2 3 21 21 H 1.08999 * 109.47282 * 119.99725 * 2 1 3 22 22 H 1.48500 * 110.00108 * 300.00041 * 3 2 1 23 23 H 1.48498 * 110.00239 * 61.32170 * 3 2 1 24 24 H 1.07997 * 119.55266 * 0.02562 * 5 4 2 25 25 H 1.08997 * 110.40394 * 82.62720 * 9 8 7 26 26 H 1.09001 * 110.49809 * 320.26270 * 9 8 7 27 27 H 1.08993 * 110.39324 * 264.91032 * 10 9 8 28 28 H 1.08995 * 110.40030 * 142.50480 * 10 9 8 29 29 H 1.09000 * 113.65862 * 338.31155 * 12 11 10 30 30 H 1.09006 * 113.66402 * 207.25766 * 12 11 10 31 31 H 1.09002 * 113.58427 * 139.29177 * 13 12 11 32 32 H 0.96695 * 113.99595 * 178.56744 * 14 13 12 33 33 H 1.08997 * 113.66253 * 152.68656 * 15 11 10 34 34 H 1.08996 * 113.70936 * 21.57709 * 15 11 10 35 35 H 1.08996 * 110.45721 * 39.53896 * 16 8 7 36 36 H 1.08992 * 110.46238 * 276.96719 * 16 8 7 37 37 H 1.08004 * 120.75875 * 180.02562 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7246 -0.0460 -2.1433 6 7 3.1747 -0.6586 -3.2227 7 6 2.8780 -1.9228 -3.4782 8 7 3.3701 -2.5274 -4.6307 9 6 4.2210 -3.6992 -4.2958 10 6 5.1058 -3.9100 -5.5463 11 6 5.1395 -2.5396 -6.2337 12 6 6.5285 -2.0121 -6.5900 13 6 6.3278 -2.6658 -7.9695 14 8 6.7884 -4.0170 -8.0344 15 6 4.8122 -2.5426 -7.7279 16 6 4.2791 -1.6089 -5.3682 17 6 2.0819 -2.6552 -2.5999 18 9 1.7847 -3.9472 -2.8596 19 6 1.6000 -2.0401 -1.4570 20 1 -0.3933 0.4417 0.7651 21 1 1.7924 -0.5138 0.8900 22 1 1.5613 2.4680 -1.2085 23 1 1.5878 2.4586 1.2242 24 1 2.9843 0.9879 -1.9705 25 1 3.6027 -4.5785 -4.1152 26 1 4.8396 -3.4851 -3.4243 27 1 4.6604 -4.6549 -6.2056 28 1 6.1111 -4.2130 -5.2536 29 1 7.3306 -2.4623 -6.0051 30 1 6.5875 -0.9243 -6.6257 31 1 6.6884 -2.0558 -8.7977 32 1 6.6453 -4.4404 -8.8918 33 1 4.3872 -1.6044 -8.0846 34 1 4.2454 -3.4159 -8.0507 35 1 4.9043 -1.0509 -4.6712 36 1 3.7050 -0.9276 -5.9960 37 1 0.9810 -2.5820 -0.7573 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17058094_17656566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:45:46 Heat of formation + Delta-G solvation = -32.409381 kcal Electronic energy + Delta-G solvation = -22460.262714 eV Core-core repulsion = 18927.322640 eV Total energy + Delta-G solvation = -3532.940074 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.09425 -42.12864 -41.05184 -38.68621 -37.69466 -35.60891 -33.75681 -32.51890 -30.66814 -28.92975 -26.84468 -26.48245 -25.02171 -23.57825 -22.61764 -22.26972 -19.83764 -18.85426 -18.68448 -18.43094 -18.13689 -17.91836 -17.13630 -16.58759 -16.53373 -15.83423 -15.74512 -15.42328 -15.31972 -15.19074 -14.48743 -14.41741 -14.22865 -14.07885 -13.88634 -13.76557 -13.34234 -12.93727 -12.74201 -12.61307 -12.44403 -12.13089 -11.79019 -11.46546 -11.24666 -11.10421 -10.90229 -10.73563 -10.55797 -10.49606 -9.31177 -4.94356 -0.36512 -0.13226 1.23353 1.59479 1.94520 2.16501 2.36762 2.95179 3.06435 3.19129 3.23606 3.35895 3.49660 3.56641 3.68465 3.71402 3.82633 3.94481 3.98544 4.07997 4.26588 4.32667 4.34353 4.48966 4.57645 4.61076 4.67905 4.77196 4.81011 4.84438 4.88631 4.90769 5.06567 5.07196 5.19504 5.28026 5.31521 5.44709 5.84016 6.53921 6.58645 6.91217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.076 4.076 3 Si 0.763 3.237 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.498 5.498 7 C 0.271 3.729 8 N -0.466 5.466 9 C 0.038 3.962 10 C -0.085 4.085 11 C -0.085 4.085 12 C -0.120 4.120 13 C 0.081 3.919 14 O -0.568 6.568 15 C -0.152 4.152 16 C 0.064 3.936 17 C 0.020 3.980 18 F -0.131 7.131 19 C -0.063 4.063 20 H 0.400 0.600 21 H 0.108 0.892 22 H -0.295 1.295 23 H -0.278 1.278 24 H 0.186 0.814 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.396 0.604 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 1.978 1.803 4.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.185 4.185 3 Si 0.667 3.333 4 C -0.130 4.130 5 C -0.037 4.037 6 N -0.211 5.211 7 C 0.037 3.963 8 N -0.183 5.183 9 C -0.087 4.087 10 C -0.123 4.123 11 C -0.085 4.085 12 C -0.157 4.157 13 C 0.022 3.978 14 O -0.376 6.376 15 C -0.190 4.190 16 C -0.062 4.062 17 C -0.004 4.004 18 F -0.110 7.110 19 C -0.089 4.089 20 H 0.251 0.749 21 H 0.126 0.874 22 H -0.222 1.222 23 H -0.204 1.204 24 H 0.202 0.798 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.246 0.754 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.509 2.816 0.906 4.590 hybrid contribution -1.752 -0.820 0.858 2.116 sum 1.757 1.997 1.764 3.192 Atomic orbital electron populations 1.86539 1.18141 1.80827 1.51405 1.24864 0.84388 1.11942 0.97341 0.94225 0.90096 0.71687 0.77263 1.20293 1.00544 0.93698 0.98457 1.22811 0.93026 1.00171 0.87716 1.67748 1.23644 1.08685 1.20996 1.20317 0.95499 0.90295 0.90148 1.62575 1.33131 1.08383 1.14243 1.23377 0.94253 0.92422 0.98674 1.21953 0.99531 0.96160 0.94646 1.21942 0.96195 0.95080 0.95307 1.23066 0.95563 1.01270 0.95825 1.22765 0.93167 0.83762 0.98077 1.86420 1.84142 1.26289 1.40706 1.23641 0.97610 1.03206 0.94532 1.22953 0.93187 0.94011 0.96076 1.18303 1.03697 0.80656 0.97765 1.91490 1.91753 1.33710 1.94020 1.21604 0.96951 0.95078 0.95274 0.74903 0.87432 1.22209 1.20444 0.79754 0.89168 0.92604 0.90524 0.89969 0.90942 0.87164 0.90044 0.75435 0.88447 0.91109 0.90915 0.89782 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.16 12.75 -148.98 -1.90 -1.74 16 2 C -0.08 0.25 2.83 71.23 0.20 0.46 16 3 Si 0.76 -3.67 29.82 68.60 2.05 -1.62 16 4 C -0.13 -0.19 5.43 -19.77 -0.11 -0.30 16 5 C 0.12 0.26 9.84 84.61 0.83 1.09 16 6 N -0.50 -3.16 8.47 -193.03 -1.63 -4.79 16 7 C 0.27 2.13 6.24 133.08 0.83 2.96 16 8 N -0.47 -3.19 5.34 -688.06 -3.67 -6.87 16 9 C 0.04 0.16 5.70 86.52 0.49 0.65 16 10 C -0.09 -0.18 5.77 31.27 0.18 0.00 16 11 C -0.08 -0.08 1.18 -51.99 -0.06 -0.14 16 12 C -0.12 0.12 7.17 30.85 0.22 0.34 16 13 C 0.08 -0.14 5.26 31.24 0.16 0.02 16 14 O -0.57 0.04 12.96 -148.98 -1.93 -1.89 16 15 C -0.15 0.13 7.16 30.91 0.22 0.35 16 16 C 0.06 0.23 5.30 86.10 0.46 0.69 16 17 C 0.02 0.15 7.03 22.58 0.16 0.31 16 18 F -0.13 -1.19 15.49 44.97 0.70 -0.49 16 19 C -0.06 -0.24 9.75 22.48 0.22 -0.02 16 20 H 0.40 -3.41 8.74 -74.06 -0.65 -4.06 16 21 H 0.11 -0.88 7.96 -2.39 -0.02 -0.89 16 22 H -0.29 -0.81 7.11 99.48 0.71 -0.11 16 23 H -0.28 0.26 7.11 99.48 0.71 0.97 16 24 H 0.19 -0.61 4.88 -2.91 -0.01 -0.63 16 25 H 0.09 0.43 7.01 -2.39 -0.02 0.41 16 26 H 0.06 0.21 7.97 -2.39 -0.02 0.19 16 27 H 0.08 0.22 7.77 -2.39 -0.02 0.21 16 28 H 0.08 0.17 7.77 -2.39 -0.02 0.15 16 29 H 0.07 0.05 7.88 -2.39 -0.02 0.03 16 30 H 0.11 -0.41 8.14 -2.38 -0.02 -0.43 16 31 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.40 -2.97 9.12 -74.06 -0.68 -3.64 16 33 H 0.10 -0.21 7.98 -2.39 -0.02 -0.23 16 34 H 0.07 0.04 7.88 -2.39 -0.02 0.02 16 35 H 0.07 0.29 7.19 -2.39 -0.02 0.27 16 36 H 0.08 0.36 7.84 -2.39 -0.02 0.34 16 37 H 0.16 0.13 8.06 -2.91 -0.02 0.10 16 Total: 0.00 -15.92 302.05 -2.76 -18.68 By element: Atomic # 1 Polarization: -7.52 SS G_CDS: -0.17 Total: -7.69 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 3.81 Total: 6.40 kcal Atomic # 7 Polarization: -6.35 SS G_CDS: -5.31 Total: -11.66 kcal Atomic # 8 Polarization: 0.20 SS G_CDS: -3.83 Total: -3.63 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.70 Total: -0.49 kcal Atomic # 14 Polarization: -3.67 SS G_CDS: 2.05 Total: -1.62 kcal Total: -15.92 -2.76 -18.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17058094_17656566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.728 kcal (2) G-P(sol) polarization free energy of solvation -15.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds