Wall clock time and date at job start Mon Mar 8 2021 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 112.84946 * 2 1 4 4 O 1.42903 * 109.47379 * 48.80401 * 3 2 1 5 5 C 1.53779 * 113.61720 * 131.30586 * 2 1 3 6 6 C 1.53782 * 87.08402 * 139.97892 * 5 2 1 7 7 H 1.09000 * 113.68470 * 89.12703 * 6 5 2 8 8 N 1.46501 * 113.61439 * 220.02094 * 6 5 2 9 9 C 1.38409 * 119.99744 * 252.49493 * 8 6 5 10 10 N 1.32484 * 119.21494 * 180.02562 * 9 8 6 11 11 C 1.32280 * 120.74173 * 179.97438 * 10 9 8 12 12 C 1.38604 * 119.19325 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.71697 * 179.97438 * 12 11 10 14 14 O 1.42896 * 109.47341 * 300.00272 * 13 12 11 15 15 Si 1.86300 * 109.46849 * 180.02562 * 13 12 11 16 16 C 1.38601 * 118.56125 * 0.27661 * 12 11 10 17 17 N 1.32277 * 119.19335 * 359.44625 * 16 12 11 18 18 C 1.53781 * 113.61248 * 228.80222 * 2 1 3 19 19 H 1.09002 * 109.47401 * 191.19351 * 1 2 3 20 20 H 1.09000 * 109.47222 * 311.19936 * 1 2 3 21 21 H 1.09006 * 109.47447 * 71.19784 * 1 2 3 22 22 H 1.09000 * 109.47176 * 168.80848 * 3 2 1 23 23 H 1.09004 * 109.47172 * 288.80019 * 3 2 1 24 24 H 0.96700 * 114.00051 * 180.02562 * 4 3 2 25 25 H 1.09004 * 113.61293 * 25.42999 * 5 2 1 26 26 H 1.08994 * 113.61581 * 254.53066 * 5 2 1 27 27 H 0.96997 * 120.00005 * 72.50159 * 8 6 5 28 28 H 1.07995 * 120.40078 * 180.02562 * 11 10 9 29 29 H 1.09000 * 109.46989 * 60.00603 * 13 12 11 30 30 H 0.96693 * 114.00306 * 299.99773 * 14 13 12 31 31 H 1.48506 * 110.00048 * 58.68772 * 15 13 12 32 32 H 1.48502 * 109.99996 * 180.02562 * 15 13 12 33 33 H 1.08002 * 120.40316 * 179.72258 * 16 12 11 34 34 H 1.09007 * 113.60981 * 105.47207 * 18 2 1 35 35 H 1.08990 * 113.62005 * 334.56925 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 8 1.4913 2.1935 1.0138 5 6 2.1460 -0.9300 1.0584 6 6 3.1923 -1.3136 -0.0013 7 1 4.0717 -0.6695 -0.0016 8 7 3.5310 -2.7389 -0.0026 9 6 4.7585 -3.1590 0.4797 10 7 5.0488 -4.4516 0.4707 11 6 6.2130 -4.8863 0.9238 12 6 7.1331 -3.9713 1.4110 13 6 8.4696 -4.4288 1.9361 14 8 8.2699 -5.3213 3.0340 15 14 9.4507 -2.9518 2.5076 16 6 6.7949 -2.6272 1.4106 17 7 5.6157 -2.2588 0.9380 18 6 2.1459 -0.9281 -1.0602 19 1 -0.3634 -1.0081 0.1995 20 1 -0.3634 0.6769 0.7732 21 1 -0.3634 0.3312 -0.9729 22 1 3.1942 1.3533 0.1995 23 1 1.9600 1.8734 -0.9729 24 1 1.8191 3.1015 1.0709 25 1 1.4945 -1.7548 1.3473 26 1 2.5650 -0.4007 1.9141 27 1 2.8951 -3.3882 -0.3416 28 1 6.4441 -5.9412 0.9136 29 1 9.0144 -4.9429 1.1443 30 1 7.7904 -4.9299 3.7769 31 1 8.7040 -2.2244 3.5653 32 1 10.7713 -3.3894 3.0272 33 1 7.4876 -1.8892 1.7875 34 1 2.5650 -0.3970 -1.9150 35 1 1.4945 -1.7522 -1.3507 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17058580_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:46:23 Heat of formation + Delta-G solvation = 4.864201 kcal Electronic energy + Delta-G solvation = -18478.611931 eV Core-core repulsion = 15479.542365 eV Total energy + Delta-G solvation = -2999.069566 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.16195 -40.94061 -38.22425 -37.30514 -35.66056 -34.74530 -32.44755 -30.12305 -27.41159 -26.83861 -26.46572 -25.90416 -23.52900 -22.46566 -19.84231 -19.06340 -18.81643 -18.22301 -18.11915 -16.69810 -16.52114 -16.31672 -16.10909 -15.72890 -15.72779 -15.32411 -14.57528 -14.47926 -14.18633 -14.03145 -13.61848 -13.28852 -13.19833 -12.92008 -12.85911 -12.29299 -11.93086 -11.80441 -11.69580 -11.47098 -11.43847 -11.08563 -10.75834 -10.69668 -10.07492 -9.10171 -4.92014 0.03343 0.12402 1.31491 1.60434 1.83299 1.97805 2.75640 3.12832 3.16590 3.40781 3.42687 3.61159 3.66049 3.71266 3.77664 3.81357 4.05171 4.21532 4.23754 4.43781 4.55949 4.60361 4.64602 4.73882 4.74914 4.80346 4.85015 4.88188 5.06657 5.13931 5.20530 5.36867 5.44409 5.77491 6.02402 6.39700 6.47885 6.91105 7.25388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C 0.095 3.905 4 O -0.590 6.590 5 C -0.141 4.141 6 C 0.140 3.860 7 H 0.114 0.886 8 N -0.681 5.681 9 C 0.552 3.448 10 N -0.591 5.591 11 C 0.213 3.787 12 C -0.285 4.285 13 C -0.056 4.056 14 O -0.547 6.547 15 Si 0.760 3.240 16 C 0.193 3.807 17 N -0.578 5.578 18 C -0.124 4.124 19 H 0.057 0.943 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.396 0.604 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.418 0.582 28 H 0.183 0.817 29 H 0.133 0.867 30 H 0.385 0.615 31 H -0.282 1.282 32 H -0.299 1.299 33 H 0.188 0.812 34 H 0.089 0.911 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 3.128 -3.016 4.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C 0.017 3.983 4 O -0.399 6.399 5 C -0.180 4.180 6 C 0.034 3.966 7 H 0.132 0.868 8 N -0.316 5.316 9 C 0.195 3.805 10 N -0.313 5.313 11 C 0.045 3.955 12 C -0.293 4.293 13 C -0.167 4.167 14 O -0.355 6.355 15 Si 0.665 3.335 16 C 0.026 3.974 17 N -0.301 5.301 18 C -0.162 4.162 19 H 0.076 0.924 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.246 0.754 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.257 0.743 28 H 0.200 0.800 29 H 0.150 0.850 30 H 0.234 0.766 31 H -0.209 1.209 32 H -0.226 1.226 33 H 0.204 0.796 34 H 0.108 0.892 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.560 3.072 -3.026 4.348 hybrid contribution 0.133 -0.670 1.180 1.364 sum 0.693 2.402 -1.846 3.108 Atomic orbital electron populations 1.21569 0.93329 1.01684 1.02043 1.21580 0.96299 0.93258 0.97084 1.21985 0.95403 0.89844 0.91033 1.86424 1.66648 1.28889 1.57909 1.23570 0.98001 0.98960 0.97469 1.22617 0.97034 0.80091 0.96816 0.86772 1.44315 1.12943 1.08751 1.65620 1.19707 0.87887 0.85104 0.87813 1.68014 1.22903 1.15582 1.24832 1.23152 0.85670 1.01291 0.85380 1.21696 1.01253 0.95722 1.10627 1.24867 0.96039 1.03832 0.91924 1.86582 1.79323 1.40689 1.28868 0.94312 0.75704 0.77456 0.86061 1.23192 0.91059 0.94531 0.88590 1.67942 1.05190 1.38060 1.18875 1.23438 0.96785 0.99230 0.96773 0.92395 0.92990 0.91966 0.92680 0.92039 0.75417 0.90039 0.92234 0.74348 0.80037 0.84979 0.76584 1.20851 1.22626 0.79610 0.89241 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.02 9.08 71.98 0.65 0.63 16 2 C -0.08 0.09 1.19 -51.66 -0.06 0.03 16 3 C 0.09 -0.20 6.39 71.98 0.46 0.26 16 4 O -0.59 -0.35 12.64 -148.98 -1.88 -2.24 16 5 C -0.14 -0.16 6.99 31.12 0.22 0.06 16 6 C 0.14 -0.05 3.90 45.52 0.18 0.12 16 7 H 0.11 0.12 6.89 -2.39 -0.02 0.10 16 8 N -0.68 -1.32 5.50 -327.93 -1.80 -3.12 16 9 C 0.55 3.27 8.42 261.49 2.20 5.47 16 10 N -0.59 -3.76 10.46 -197.99 -2.07 -5.83 16 11 C 0.21 0.51 10.92 84.71 0.93 1.44 16 12 C -0.28 0.11 5.40 -19.69 -0.11 0.00 16 13 C -0.06 0.17 2.85 71.24 0.20 0.37 16 14 O -0.55 -0.15 12.79 -148.98 -1.90 -2.06 16 15 Si 0.76 -3.08 29.87 68.60 2.05 -1.03 16 16 C 0.19 0.10 9.92 84.71 0.84 0.94 16 17 N -0.58 -2.87 9.13 -197.99 -1.81 -4.68 16 18 C -0.12 0.47 6.98 31.12 0.22 0.69 16 19 H 0.06 -0.03 7.94 -2.39 -0.02 -0.05 16 20 H 0.05 0.20 7.32 -2.39 -0.02 0.18 16 21 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 22 H 0.06 -0.18 7.35 -2.39 -0.02 -0.20 16 23 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 24 H 0.40 -3.01 9.12 -74.06 -0.68 -3.68 16 25 H 0.08 0.15 7.96 -2.38 -0.02 0.13 16 26 H 0.06 0.26 8.10 -2.39 -0.02 0.24 16 27 H 0.42 -0.10 8.84 -92.71 -0.82 -0.92 16 28 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 29 H 0.13 -0.70 7.96 -2.39 -0.02 -0.72 16 30 H 0.39 -1.74 8.70 -74.06 -0.64 -2.38 16 31 H -0.28 0.00 7.11 99.48 0.71 0.70 16 32 H -0.30 -1.13 7.11 99.48 0.71 -0.42 16 33 H 0.19 -0.93 5.04 -2.91 -0.01 -0.94 16 34 H 0.09 -0.49 8.10 -2.38 -0.02 -0.51 16 35 H 0.10 -0.52 8.08 -2.39 -0.02 -0.54 16 Total: 0.00 -15.94 292.40 -2.66 -18.60 By element: Atomic # 1 Polarization: -8.70 SS G_CDS: -0.97 Total: -9.66 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.73 Total: 10.03 kcal Atomic # 7 Polarization: -7.96 SS G_CDS: -5.68 Total: -13.64 kcal Atomic # 8 Polarization: -0.51 SS G_CDS: -3.79 Total: -4.29 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.05 Total: -1.03 kcal Total: -15.94 -2.66 -18.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17058580_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.466 kcal (2) G-P(sol) polarization free energy of solvation -15.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds