Wall clock time and date at job start Mon Mar 8 2021 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 112.90339 * 2 1 4 4 O 1.42905 * 109.47124 * 311.25403 * 3 2 1 5 5 C 1.53774 * 113.62058 * 131.24970 * 2 1 3 6 6 C 1.53785 * 87.17034 * 89.15755 * 5 2 1 7 7 H 1.09000 * 113.61223 * 139.94055 * 6 5 2 8 8 N 1.46500 * 113.61819 * 270.84431 * 6 5 2 9 9 C 1.38613 * 120.00100 * 196.69491 * 8 6 5 10 10 N 1.29689 * 124.94743 * 0.02562 * 9 8 6 11 11 C 1.32115 * 116.86594 * 179.97438 * 10 9 8 12 12 C 1.33331 * 114.57801 * 0.02562 * 11 10 9 13 13 C 1.50710 * 125.95137 * 180.02562 * 12 11 10 14 14 O 1.42907 * 109.46883 * 300.00119 * 13 12 11 15 15 Si 1.86292 * 109.47044 * 179.97438 * 13 12 11 16 16 S 1.70962 * 124.94962 * 179.72158 * 9 8 6 17 17 C 1.53774 * 87.07932 * 25.39480 * 6 5 2 18 18 H 1.09005 * 109.46938 * 281.31003 * 1 2 3 19 19 H 1.09001 * 109.47414 * 41.31542 * 1 2 3 20 20 H 1.09005 * 109.46816 * 161.31440 * 1 2 3 21 21 H 1.08997 * 109.47130 * 71.25484 * 3 2 1 22 22 H 1.08996 * 109.47239 * 191.25145 * 3 2 1 23 23 H 0.96706 * 113.99649 * 180.02562 * 4 3 2 24 24 H 1.09003 * 113.61178 * 334.57589 * 5 2 1 25 25 H 1.08997 * 113.61711 * 203.75104 * 5 2 1 26 26 H 0.96998 * 119.99845 * 16.69249 * 8 6 5 27 27 H 1.07998 * 122.71230 * 180.02562 * 11 10 9 28 28 H 1.09001 * 109.47041 * 59.99683 * 13 12 11 29 29 H 0.96696 * 113.99678 * 179.97438 * 14 13 12 30 30 H 1.48502 * 109.99866 * 59.99948 * 15 13 12 31 31 H 1.48504 * 109.99967 * 181.31702 * 15 13 12 32 32 H 1.09001 * 113.62137 * 89.11848 * 17 6 5 33 33 H 1.09007 * 113.61392 * 220.01524 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 8 1.4925 2.1940 -1.0129 5 6 2.1462 -0.9289 1.0593 6 6 2.0951 -2.0437 0.0012 7 1 2.9748 -2.6873 0.0021 8 7 0.8381 -2.7962 0.0016 9 6 0.7662 -4.0259 -0.6341 10 7 1.7492 -4.5991 -1.2563 11 6 1.5030 -5.7747 -1.8066 12 6 0.2549 -6.2137 -1.6418 13 6 -0.3009 -7.5154 -2.1597 14 8 -0.1946 -7.5453 -3.5845 15 14 -2.0910 -7.6663 -1.6664 16 16 -0.6291 -5.0112 -0.7059 17 6 2.1467 -0.9314 -1.0594 18 1 -0.3633 0.2016 1.0078 19 1 -0.3634 0.7719 -0.6785 20 1 -0.3633 -0.9736 -0.3293 21 1 1.9627 1.8726 0.9731 22 1 3.1953 1.3519 -0.2005 23 1 1.8216 3.1015 -1.0705 24 1 1.4946 -1.1086 1.9145 25 1 3.1586 -0.6488 1.3499 26 1 0.0562 -2.4340 0.4468 27 1 2.2522 -6.3348 -2.3463 28 1 0.2637 -8.3458 -1.7357 29 1 -0.5338 -8.3563 -3.9872 30 1 -2.8719 -6.5398 -2.2378 31 1 -2.6420 -8.9600 -2.1439 32 1 3.1594 -0.6509 -1.3491 33 1 1.4957 -1.1130 -1.9146 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17058580_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:46:27 Heat of formation + Delta-G solvation = 4.018806 kcal Electronic energy + Delta-G solvation = -17113.654621 eV Core-core repulsion = 14269.126554 eV Total energy + Delta-G solvation = -2844.528067 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45751 -40.37553 -38.00956 -37.36777 -35.18134 -31.51795 -30.42686 -27.72039 -26.87297 -26.39123 -24.74624 -22.91060 -20.66979 -19.99119 -19.06164 -18.61242 -18.23416 -17.67024 -16.70270 -16.36736 -16.09769 -15.75116 -15.52284 -15.42345 -14.65271 -14.44032 -14.30780 -14.04206 -13.68519 -13.25100 -13.09081 -12.88233 -12.52750 -12.45750 -12.35862 -11.81954 -11.63143 -11.25625 -11.02147 -10.75830 -10.66008 -10.32029 -10.20634 -8.73511 -5.06178 -0.11428 0.00811 0.62785 1.22312 1.51856 1.87977 1.94375 2.12697 3.18788 3.41006 3.43212 3.57582 3.66828 3.79695 3.93756 4.05976 4.19313 4.46809 4.49789 4.57642 4.59264 4.70580 4.74052 4.75554 4.87457 4.90956 4.96847 5.07315 5.15714 5.24753 5.40072 5.87880 6.11097 6.58615 6.90290 6.98411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 C 0.087 3.913 4 O -0.593 6.593 5 C -0.119 4.119 6 C 0.136 3.864 7 H 0.091 0.909 8 N -0.668 5.668 9 C 0.314 3.686 10 N -0.574 5.574 11 C 0.101 3.899 12 C -0.270 4.270 13 C -0.025 4.025 14 O -0.556 6.556 15 Si 0.718 3.282 16 S 0.113 5.887 17 C -0.142 4.142 18 H 0.072 0.928 19 H 0.054 0.946 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.394 0.606 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.423 0.577 27 H 0.180 0.820 28 H 0.108 0.892 29 H 0.397 0.603 30 H -0.286 1.286 31 H -0.253 1.253 32 H 0.093 0.907 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 0.305 5.355 5.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.085 4.085 3 C 0.010 3.990 4 O -0.402 6.402 5 C -0.157 4.157 6 C 0.028 3.972 7 H 0.109 0.891 8 N -0.310 5.310 9 C -0.056 4.056 10 N -0.300 5.300 11 C -0.050 4.050 12 C -0.393 4.393 13 C -0.137 4.137 14 O -0.367 6.367 15 Si 0.621 3.379 16 S 0.362 5.638 17 C -0.181 4.181 18 H 0.091 0.909 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.243 0.757 24 H 0.109 0.891 25 H 0.134 0.866 26 H 0.265 0.735 27 H 0.197 0.803 28 H 0.126 0.874 29 H 0.248 0.752 30 H -0.213 1.213 31 H -0.178 1.178 32 H 0.111 0.889 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.186 0.674 5.466 5.634 hybrid contribution 0.958 -0.183 -1.677 1.940 sum -0.229 0.491 3.789 3.828 Atomic orbital electron populations 1.21654 0.93034 1.01632 1.02626 1.21969 0.96278 0.93188 0.97100 1.22198 0.95548 0.90470 0.90794 1.86447 1.66623 1.28857 1.58234 1.23388 1.03588 0.92581 0.96158 1.21820 0.86245 0.91770 0.97324 0.89052 1.44085 1.14564 1.14768 1.57606 1.23940 0.93531 0.92537 0.95582 1.66473 1.31680 1.12530 1.19363 1.21460 0.95742 0.90579 0.97171 1.24624 0.97134 1.03567 1.13986 1.23934 1.11728 0.94641 0.83427 1.86571 1.85154 1.46195 1.18759 0.94504 0.73105 0.79423 0.90903 1.83765 1.13284 1.12892 1.53861 1.23573 1.01421 0.96201 0.96906 0.90866 0.92703 0.92583 0.92329 0.92575 0.75666 0.89071 0.86635 0.73512 0.80322 0.87408 0.75150 1.21313 1.17760 0.88904 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.06 8.64 71.98 0.62 0.68 16 2 C -0.09 0.12 1.20 -51.60 -0.06 0.06 16 3 C 0.09 -0.20 6.52 71.98 0.47 0.27 16 4 O -0.59 -0.70 12.54 -148.98 -1.87 -2.56 16 5 C -0.12 0.57 6.97 31.12 0.22 0.78 16 6 C 0.14 0.06 4.34 45.52 0.20 0.26 16 7 H 0.09 0.28 7.87 -2.39 -0.02 0.26 16 8 N -0.67 -0.81 4.64 -327.90 -1.52 -2.33 16 9 C 0.31 1.83 8.09 179.32 1.45 3.29 16 10 N -0.57 -5.48 9.96 -202.03 -2.01 -7.49 16 11 C 0.10 0.77 11.22 83.54 0.94 1.71 16 12 C -0.27 -1.41 5.78 24.58 0.14 -1.26 16 13 C -0.03 -0.02 2.98 71.24 0.21 0.19 16 14 O -0.56 -1.75 12.85 -148.98 -1.91 -3.66 16 15 Si 0.72 -0.26 31.05 68.60 2.13 1.87 16 16 S 0.11 0.37 20.57 -56.49 -1.16 -0.79 16 17 C -0.14 -0.31 6.99 31.18 0.22 -0.09 16 18 H 0.07 -0.25 8.14 -2.38 -0.02 -0.27 16 19 H 0.05 0.21 7.14 -2.39 -0.02 0.20 16 20 H 0.06 -0.03 5.31 -2.38 -0.01 -0.04 16 21 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 22 H 0.06 -0.23 7.95 -2.39 -0.02 -0.24 16 23 H 0.39 -2.71 9.12 -74.05 -0.68 -3.39 16 24 H 0.09 -0.61 8.10 -2.39 -0.02 -0.63 16 25 H 0.12 -0.86 8.10 -2.39 -0.02 -0.88 16 26 H 0.42 -1.15 6.64 -92.71 -0.62 -1.76 16 27 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 28 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 29 H 0.40 -2.26 8.74 -74.06 -0.65 -2.91 16 30 H -0.29 -2.12 7.11 99.48 0.71 -1.42 16 31 H -0.25 -0.40 7.11 99.48 0.71 0.31 16 32 H 0.09 0.12 7.96 -2.39 -0.02 0.10 16 33 H 0.05 0.35 8.10 -2.38 -0.02 0.33 16 Total: 0.00 -16.59 285.87 -2.69 -19.29 By element: Atomic # 1 Polarization: -9.46 SS G_CDS: -0.75 Total: -10.21 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.40 Total: 5.89 kcal Atomic # 7 Polarization: -6.29 SS G_CDS: -3.53 Total: -9.82 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: -3.78 Total: -6.22 kcal Atomic # 14 Polarization: -0.26 SS G_CDS: 2.13 Total: 1.87 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.16 Total: -0.79 kcal Total: -16.59 -2.69 -19.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17058580_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.305 kcal (2) G-P(sol) polarization free energy of solvation -16.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds