Wall clock time and date at job start Mon Mar 8 2021 08:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46504 * 120.00184 * 2 1 4 4 C 1.34778 * 120.00466 * 180.02562 * 2 1 3 5 5 O 1.21284 * 119.99514 * 5.02420 * 4 2 1 6 6 C 1.50699 * 120.00540 * 185.02638 * 4 2 1 7 7 H 1.09001 * 109.46899 * 25.74296 * 6 4 2 8 8 C 1.52997 * 109.47240 * 145.74398 * 6 4 2 9 9 C 1.52993 * 109.47195 * 179.97438 * 8 6 4 10 10 C 1.53002 * 109.47654 * 300.00383 * 9 8 6 11 11 H 1.08993 * 109.46860 * 299.99937 * 10 9 8 12 12 N 1.46497 * 109.47652 * 179.97438 * 10 9 8 13 13 C 1.38996 * 120.00133 * 154.72229 * 12 10 9 14 14 N 1.32394 * 119.70954 * 180.27679 * 13 12 10 15 15 C 1.31971 * 121.62933 * 179.97438 * 14 13 12 16 16 C 1.38024 * 120.85049 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.33309 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47060 * 245.00119 * 17 16 15 19 19 Si 1.86305 * 109.47150 * 4.99760 * 17 16 15 20 20 C 1.38881 * 119.33572 * 359.97420 * 16 15 14 21 21 C 1.38308 * 118.49983 * 359.73403 * 20 16 15 22 22 C 1.53006 * 109.46736 * 59.99518 * 10 9 8 23 23 C 1.52997 * 109.47293 * 300.00094 * 22 10 9 24 24 H 1.09008 * 109.47000 * 269.99172 * 1 2 3 25 25 H 1.08996 * 109.47806 * 29.99560 * 1 2 3 26 26 H 1.09006 * 109.47170 * 149.99907 * 1 2 3 27 27 H 1.08996 * 109.47461 * 238.04252 * 3 2 1 28 28 H 1.09005 * 109.46805 * 358.04099 * 3 2 1 29 29 H 1.08994 * 109.46896 * 118.03681 * 3 2 1 30 30 H 1.09001 * 109.47258 * 60.00117 * 8 6 4 31 31 H 1.09001 * 109.47385 * 300.00259 * 8 6 4 32 32 H 1.08999 * 109.47863 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.46892 * 60.00445 * 9 8 6 34 34 H 0.97004 * 119.99743 * 335.00418 * 12 10 9 35 35 H 1.08001 * 119.57732 * 180.02562 * 15 14 13 36 36 H 1.09000 * 109.47690 * 124.99983 * 17 16 15 37 37 H 0.96705 * 114.00034 * 180.02562 * 18 17 16 38 38 H 1.48503 * 110.00053 * 178.68304 * 19 17 16 39 39 H 1.48496 * 110.00023 * 300.00062 * 19 17 16 40 40 H 1.07996 * 120.75104 * 179.97438 * 20 16 15 41 41 H 1.08000 * 120.44704 * 180.28461 * 21 20 16 42 42 H 1.08993 * 109.47104 * 60.00568 * 22 10 9 43 43 H 1.09001 * 109.46531 * 180.02562 * 22 10 9 44 44 H 1.09001 * 109.47274 * 300.00547 * 23 22 10 45 45 H 1.09001 * 109.46963 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5360 -2.2154 -0.0930 6 6 3.6416 -1.1697 0.1138 7 1 3.9684 -0.2653 0.6270 8 6 4.0905 -2.3976 0.9086 9 6 5.6160 -2.4006 1.0241 10 6 6.2335 -2.4449 -0.3751 11 1 5.9063 -3.3492 -0.8881 12 7 7.6943 -2.4471 -0.2645 13 6 8.4675 -2.9949 -1.2815 14 7 9.7869 -2.9987 -1.1730 15 6 10.5573 -3.5091 -2.1152 16 6 10.0095 -4.0606 -3.2558 17 6 10.9002 -4.6397 -4.3245 18 8 10.7714 -3.8691 -5.5211 19 14 12.6710 -4.5983 -3.7469 20 6 8.6292 -4.0764 -3.4086 21 6 7.8476 -3.5397 -2.4017 22 6 5.7845 -1.2170 -1.1698 23 6 4.2589 -1.2141 -1.2854 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8900 -0.5139 27 1 2.8502 1.3115 -0.8719 28 1 1.4896 2.0969 -0.0351 29 1 2.7974 1.3418 0.9070 30 1 3.7636 -3.3020 0.3954 31 1 3.6503 -2.3662 1.9052 32 1 5.9359 -3.2751 1.5906 33 1 5.9433 -1.4962 1.5371 34 1 8.1218 -2.0700 0.5203 35 1 11.6302 -3.4952 -1.9922 36 1 10.6068 -5.6705 -4.5230 37 1 11.3176 -4.1857 -6.2536 38 1 13.5560 -5.1957 -4.7789 39 1 13.0833 -3.1982 -3.4731 40 1 8.1763 -4.5018 -4.2919 41 1 6.7709 -3.5398 -2.4858 42 1 6.1117 -0.3127 -0.6569 43 1 6.2240 -1.2488 -2.1668 44 1 3.9317 -2.1185 -1.7984 45 1 3.9391 -0.3391 -1.8512 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17310062_13915762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:50:46 Heat of formation + Delta-G solvation = -22.188997 kcal Electronic energy + Delta-G solvation = -25297.683072 eV Core-core repulsion = 21702.601395 eV Total energy + Delta-G solvation = -3595.081678 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64533 -41.20521 -39.31279 -37.90582 -36.61472 -35.94764 -33.55778 -32.28105 -31.77354 -30.45147 -28.78977 -27.20269 -26.12959 -24.94173 -23.75382 -23.66622 -22.24635 -21.16647 -20.10050 -18.69659 -18.51380 -18.15002 -18.00654 -17.25951 -16.75512 -16.61470 -16.33664 -15.78278 -15.62458 -15.27462 -15.04206 -14.92802 -14.74914 -14.25039 -14.10639 -14.05992 -13.91327 -13.86877 -13.57546 -13.52493 -13.39630 -13.24167 -12.89354 -12.63849 -12.35577 -12.28131 -12.14583 -12.01510 -11.65356 -11.39340 -10.96881 -10.79586 -10.70839 -10.59620 -10.29999 -9.71937 -8.68077 -4.90931 0.22667 0.41013 1.33129 1.51920 1.60370 1.95892 1.99683 2.11635 2.79258 3.43322 3.47378 3.55629 3.63007 3.65064 3.84974 3.96258 4.00343 4.10155 4.13174 4.14325 4.27782 4.29740 4.32622 4.37945 4.41827 4.45220 4.46758 4.50863 4.64585 4.72889 4.77561 4.78602 4.85510 4.87589 4.91955 5.02812 5.04753 5.11052 5.13900 5.24942 5.28107 5.37174 5.47864 5.54677 6.04600 6.29810 6.57150 6.63953 7.09887 7.15566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.625 5.625 3 C 0.069 3.931 4 C 0.509 3.491 5 O -0.587 6.587 6 C -0.100 4.100 7 H 0.118 0.882 8 C -0.096 4.096 9 C -0.114 4.114 10 C 0.154 3.846 11 H 0.079 0.921 12 N -0.713 5.713 13 C 0.398 3.602 14 N -0.563 5.563 15 C 0.144 3.856 16 C -0.199 4.199 17 C -0.067 4.067 18 O -0.560 6.560 19 Si 0.753 3.247 20 C -0.014 4.014 21 C -0.243 4.243 22 C -0.124 4.124 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.408 0.592 35 H 0.164 0.836 36 H 0.095 0.905 37 H 0.394 0.606 38 H -0.283 1.283 39 H -0.298 1.298 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 2.711 1.284 3.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.358 5.358 3 C -0.072 4.072 4 C 0.298 3.702 5 O -0.467 6.467 6 C -0.121 4.121 7 H 0.136 0.864 8 C -0.135 4.135 9 C -0.152 4.152 10 C 0.049 3.951 11 H 0.097 0.903 12 N -0.344 5.344 13 C 0.162 3.838 14 N -0.281 5.281 15 C -0.012 4.012 16 C -0.204 4.204 17 C -0.176 4.176 18 O -0.370 6.370 19 Si 0.659 3.341 20 C -0.039 4.039 21 C -0.268 4.268 22 C -0.162 4.162 23 C -0.136 4.136 24 H 0.076 0.924 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.245 0.755 35 H 0.181 0.819 36 H 0.113 0.887 37 H 0.244 0.756 38 H -0.209 1.209 39 H -0.226 1.226 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.070 3.163 2.179 3.842 hybrid contribution -0.532 -0.021 -1.753 1.832 sum -0.463 3.142 0.426 3.204 Atomic orbital electron populations 1.21769 0.79118 1.03432 1.02191 1.48009 1.07613 1.07270 1.72885 1.22119 0.98026 0.83928 1.03146 1.21265 0.91215 0.82883 0.74835 1.90684 1.71545 1.33080 1.51436 1.21418 0.89114 1.02247 0.99282 0.86447 1.21290 0.95070 0.96986 1.00128 1.21694 0.94031 1.04179 0.95273 1.21094 0.77680 0.98818 0.97491 0.90283 1.44619 1.04936 1.64275 1.20569 1.18609 0.87829 0.89163 0.88211 1.67167 1.04731 1.23768 1.32400 1.22422 0.99375 0.90875 0.88577 1.20108 0.95103 1.07721 0.97498 1.24690 1.09756 0.96878 0.86307 1.86551 1.69451 1.58087 1.22893 0.94270 0.72382 0.80783 0.86693 1.21414 0.92625 0.92614 0.97294 1.21651 1.01800 1.07722 0.95594 1.21947 0.94391 0.98978 1.00927 1.21365 0.94915 1.03076 0.94271 0.92388 0.88666 0.92690 0.90732 0.88688 0.90478 0.92149 0.91241 0.90501 0.89414 0.75542 0.81938 0.88737 0.75576 1.20936 1.22621 0.83684 0.83618 0.90008 0.91717 0.92243 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.06 10.45 127.77 1.34 1.27 16 2 N -0.63 0.30 3.27 -871.89 -2.85 -2.55 16 3 C 0.07 -0.59 9.52 127.77 1.22 0.63 16 4 C 0.51 2.09 6.67 87.66 0.58 2.67 16 5 O -0.59 -7.98 15.81 -3.04 -0.05 -8.03 16 6 C -0.10 0.28 1.96 -11.54 -0.02 0.26 16 7 H 0.12 -0.91 6.45 -2.39 -0.02 -0.92 16 8 C -0.10 0.16 4.85 30.59 0.15 0.31 16 9 C -0.11 0.59 5.39 30.59 0.16 0.75 16 10 C 0.15 -0.52 2.14 44.99 0.10 -0.43 16 11 H 0.08 -0.15 6.43 -2.39 -0.02 -0.16 16 12 N -0.71 0.22 5.24 -324.55 -1.70 -1.48 16 13 C 0.40 1.91 7.63 133.07 1.02 2.92 16 14 N -0.56 -4.33 10.39 -193.27 -2.01 -6.33 16 15 C 0.14 0.80 9.84 84.62 0.83 1.63 16 16 C -0.20 -0.83 5.39 -19.76 -0.11 -0.93 16 17 C -0.07 -0.02 2.81 71.24 0.20 0.18 16 18 O -0.56 -1.52 12.82 -148.98 -1.91 -3.43 16 19 Si 0.75 -0.73 29.88 68.60 2.05 1.32 16 20 C -0.01 -0.05 9.84 22.44 0.22 0.17 16 21 C -0.24 -0.78 8.86 22.50 0.20 -0.58 16 22 C -0.12 0.56 5.43 30.60 0.17 0.72 16 23 C -0.10 0.36 5.18 30.59 0.16 0.52 16 24 H 0.06 -0.07 8.14 -2.38 -0.02 -0.09 16 25 H 0.09 -0.57 7.90 -2.39 -0.02 -0.59 16 26 H 0.05 0.23 7.36 -2.38 -0.02 0.21 16 27 H 0.07 -0.75 7.37 -2.39 -0.02 -0.77 16 28 H 0.09 -1.05 7.78 -2.38 -0.02 -1.07 16 29 H 0.08 -0.83 7.33 -2.39 -0.02 -0.84 16 30 H 0.06 0.16 7.85 -2.39 -0.02 0.14 16 31 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 34 H 0.41 -0.67 8.73 -92.70 -0.81 -1.48 16 35 H 0.16 0.33 4.87 -2.91 -0.01 0.32 16 36 H 0.09 -0.37 7.96 -2.39 -0.02 -0.39 16 37 H 0.39 -2.13 8.74 -74.05 -0.65 -2.78 16 38 H -0.28 -0.74 7.11 99.48 0.71 -0.03 16 39 H -0.30 -1.92 7.05 99.48 0.70 -1.22 16 40 H 0.15 0.06 8.06 -2.91 -0.02 0.03 16 41 H 0.15 -0.01 6.10 -2.91 -0.02 -0.03 16 42 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.06 -0.14 7.71 -2.39 -0.02 -0.15 16 44 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.08 -0.42 7.41 -2.39 -0.02 -0.44 16 Total: 0.00 -21.69 354.47 -0.68 -22.36 By element: Atomic # 1 Polarization: -11.56 SS G_CDS: -0.41 Total: -11.97 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.21 Total: 10.12 kcal Atomic # 7 Polarization: -3.81 SS G_CDS: -6.56 Total: -10.37 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -1.96 Total: -11.46 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.05 Total: 1.32 kcal Total: -21.69 -0.68 -22.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310062_13915762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.176 kcal (2) G-P(sol) polarization free energy of solvation -21.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds