Wall clock time and date at job start Mon Mar 8 2021 08:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33329 * 125.94840 * 2 1 4 4 C 1.50698 * 122.70858 * 359.96481 * 3 2 1 5 5 O 1.42900 * 109.47494 * 329.99915 * 4 3 2 6 6 Si 1.86306 * 109.46820 * 209.99661 * 4 3 2 7 7 N 1.32117 * 114.57659 * 179.79019 * 3 2 1 8 8 C 1.29680 * 116.86756 * 0.51986 * 7 3 2 9 9 N 1.38619 * 124.95194 * 179.71888 * 8 7 3 10 10 C 1.46500 * 120.00285 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47064 * 34.98966 * 10 9 8 12 12 C 1.52993 * 109.47333 * 154.99853 * 10 9 8 13 13 C 1.52994 * 109.47147 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47257 * 299.99814 * 13 12 10 15 15 H 1.08999 * 109.47308 * 300.00109 * 14 13 12 16 16 C 1.50700 * 109.46953 * 179.97438 * 14 13 12 17 17 O 1.21279 * 120.00347 * 359.97438 * 16 14 13 18 18 N 1.34780 * 120.00112 * 180.02562 * 16 14 13 19 19 C 1.46500 * 120.00487 * 180.02562 * 18 16 14 20 20 C 1.46498 * 119.99674 * 359.97438 * 18 16 14 21 21 C 1.53002 * 109.46783 * 60.00158 * 14 13 12 22 22 C 1.52994 * 109.47095 * 299.99941 * 21 14 13 23 23 S 1.70970 * 110.10225 * 359.71512 * 8 7 3 24 24 H 1.09001 * 109.46953 * 179.71216 * 1 2 3 25 25 H 1.09000 * 109.47318 * 299.70813 * 1 2 3 26 26 H 1.09000 * 109.47161 * 59.71444 * 1 2 3 27 27 H 1.09000 * 109.47423 * 89.99830 * 4 3 2 28 28 H 0.96699 * 113.99787 * 180.02562 * 5 4 3 29 29 H 1.48497 * 109.99880 * 298.68114 * 6 4 3 30 30 H 1.48498 * 110.00078 * 60.00433 * 6 4 3 31 31 H 0.97002 * 119.99652 * 0.02562 * 9 8 7 32 32 H 1.09002 * 109.46908 * 300.00171 * 12 10 9 33 33 H 1.08999 * 109.47079 * 59.99822 * 12 10 9 34 34 H 1.08999 * 109.47051 * 60.00081 * 13 12 10 35 35 H 1.09001 * 109.47507 * 180.02562 * 13 12 10 36 36 H 1.09003 * 109.46936 * 59.99369 * 19 18 16 37 37 H 1.08999 * 109.47166 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.46958 * 299.99913 * 19 18 16 39 39 H 1.09003 * 109.47378 * 89.99927 * 20 18 16 40 40 H 1.09001 * 109.47248 * 210.00265 * 20 18 16 41 41 H 1.09001 * 109.47317 * 329.99950 * 20 18 16 42 42 H 1.08999 * 109.47238 * 59.99909 * 21 14 13 43 43 H 1.09002 * 109.46801 * 179.97438 * 21 14 13 44 44 H 1.08999 * 109.47051 * 300.00082 * 22 21 14 45 45 H 1.09003 * 109.46914 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7413 2.4830 -0.0008 5 8 0.4815 2.5019 -0.6750 6 14 2.9327 3.6147 -0.8788 7 7 3.5850 0.8189 0.0044 8 6 3.9315 -0.4308 -0.0024 9 7 5.2385 -0.8924 -0.0049 10 6 5.5067 -2.3327 -0.0132 11 1 4.7457 -2.8405 -0.6057 12 6 6.8854 -2.5912 -0.6242 13 6 7.1657 -4.0952 -0.6323 14 6 7.1355 -4.6274 0.8018 15 1 7.8964 -4.1193 1.3941 16 6 7.4109 -6.1090 0.7937 17 8 7.6112 -6.6829 -0.2558 18 7 7.4338 -6.7967 1.9526 19 6 7.7021 -8.2368 1.9448 20 6 7.1913 -6.1036 3.2203 21 6 5.7567 -4.3689 1.4127 22 6 5.4764 -2.8649 1.4209 23 16 2.5413 -1.4260 -0.0077 24 1 -0.3633 -1.0277 -0.0052 25 1 -0.3634 0.5093 0.8926 26 1 -0.3633 0.5183 -0.8874 27 1 1.6085 2.8218 1.0267 28 1 0.0694 3.3757 -0.7140 29 1 4.2369 3.6285 -0.1689 30 1 3.1222 3.1636 -2.2808 31 1 5.9756 -0.2619 -0.0010 32 1 6.9071 -2.2116 -1.6457 33 1 7.6464 -2.0833 -0.0316 34 1 6.4047 -4.6034 -1.2246 35 1 8.1481 -4.2794 -1.0671 36 1 8.6845 -8.4210 1.5099 37 1 7.6805 -8.6160 2.9665 38 1 6.9414 -8.7449 1.3522 39 1 6.1246 -6.1180 3.4441 40 1 7.7369 -6.6059 4.0192 41 1 7.5320 -5.0713 3.1411 42 1 4.9958 -4.8771 0.8205 43 1 5.7351 -4.7485 2.4343 44 1 6.2374 -2.3567 2.0132 45 1 4.4944 -2.6807 1.8565 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17310062_15704122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:50:52 Heat of formation + Delta-G solvation = -15.442135 kcal Electronic energy + Delta-G solvation = -26016.068384 eV Core-core repulsion = 22354.893899 eV Total energy + Delta-G solvation = -3661.174484 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61102 -41.08989 -39.49969 -37.66584 -36.74575 -36.05693 -33.11995 -32.00004 -31.11455 -29.29039 -28.62786 -27.18866 -25.67900 -24.69794 -23.94032 -23.35657 -21.63826 -20.41098 -20.08209 -19.38158 -18.18610 -18.00354 -17.40710 -17.33207 -16.87906 -16.71820 -16.34205 -15.71176 -15.67808 -15.28335 -15.16545 -14.95160 -14.47064 -14.27182 -14.13692 -13.92479 -13.90278 -13.71185 -13.63683 -13.49554 -13.36643 -13.24292 -13.05910 -12.74131 -12.58658 -12.54126 -12.33625 -12.18175 -11.85917 -11.61380 -11.53553 -11.00898 -10.82646 -10.77236 -10.40595 -10.06511 -9.75493 -8.71127 -4.96129 -0.10769 0.04163 0.64331 1.27580 1.50976 1.66828 1.76054 1.79593 2.00985 2.21034 3.10677 3.38912 3.44142 3.51756 3.87679 3.94204 3.97006 4.02178 4.08807 4.14688 4.21875 4.29589 4.30545 4.35969 4.37421 4.42535 4.43109 4.57663 4.64559 4.70591 4.77591 4.81587 4.84238 4.85374 4.86782 4.98771 5.01508 5.05457 5.05961 5.18205 5.25609 5.33737 5.43329 5.55599 6.19356 6.27785 6.76793 6.95361 7.06905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.244 4.244 3 C 0.072 3.928 4 C -0.034 4.034 5 O -0.552 6.552 6 Si 0.811 3.189 7 N -0.584 5.584 8 C 0.309 3.691 9 N -0.685 5.685 10 C 0.149 3.851 11 H 0.074 0.926 12 C -0.114 4.114 13 C -0.092 4.092 14 C -0.100 4.100 15 H 0.124 0.876 16 C 0.507 3.493 17 O -0.588 6.588 18 N -0.622 5.622 19 C 0.083 3.917 20 C 0.064 3.936 21 C -0.112 4.112 22 C -0.126 4.126 23 S 0.121 5.879 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.407 0.593 29 H -0.302 1.302 30 H -0.325 1.325 31 H 0.414 0.586 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 1.932 7.161 7.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.367 4.367 3 C -0.057 4.057 4 C -0.146 4.146 5 O -0.362 6.362 6 Si 0.719 3.281 7 N -0.313 5.313 8 C -0.062 4.062 9 N -0.324 5.324 10 C 0.045 3.955 11 H 0.092 0.908 12 C -0.152 4.152 13 C -0.131 4.131 14 C -0.120 4.120 15 H 0.141 0.859 16 C 0.296 3.704 17 O -0.468 6.468 18 N -0.355 5.355 19 C -0.059 4.059 20 C -0.078 4.078 21 C -0.150 4.150 22 C -0.165 4.165 23 S 0.369 5.631 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.260 0.740 29 H -0.230 1.230 30 H -0.254 1.254 31 H 0.252 0.748 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.107 0.893 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.374 0.179 6.172 6.186 hybrid contribution 0.344 0.180 -0.120 0.406 sum -0.030 0.359 6.051 6.062 Atomic orbital electron populations 1.20107 0.84995 1.01909 1.04091 1.25538 1.02588 0.92716 1.15869 1.19428 0.86497 0.96744 1.03005 1.23973 0.93516 0.94512 1.02633 1.86388 1.33133 1.37907 1.78816 0.95376 0.76232 0.82695 0.73803 1.65772 1.18033 1.18014 1.29443 1.23508 0.93061 0.91223 0.98404 1.44202 1.00943 1.07735 1.79569 1.21322 0.98774 0.77618 0.97810 0.90819 1.21707 0.95091 0.96322 1.02109 1.21217 1.02730 0.94119 0.94995 1.21380 1.00860 0.90373 0.99428 0.85872 1.21241 0.75637 0.90616 0.82893 1.90697 1.51257 1.72117 1.32747 1.47963 1.70140 1.09647 1.07708 1.21715 1.00564 0.79749 1.03890 1.22339 1.02676 0.98824 0.83927 1.21743 0.94166 0.95872 1.03249 1.21983 1.03432 0.95464 0.95639 1.83801 0.95665 1.09760 1.73833 0.91842 0.90067 0.89511 0.88164 0.74023 1.23006 1.25432 0.74769 0.90822 0.88984 0.92443 0.91273 0.93288 0.87631 0.93345 0.90691 0.89243 0.89105 0.92098 0.87756 0.89315 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.14 8.92 71.24 0.64 0.49 16 2 C -0.24 -1.84 6.50 24.58 0.16 -1.68 16 3 C 0.07 0.68 5.95 41.40 0.25 0.93 16 4 C -0.03 -0.09 2.93 71.24 0.21 0.12 16 5 O -0.55 0.49 9.79 -148.98 -1.46 -0.97 16 6 Si 0.81 2.90 32.09 68.60 2.20 5.10 16 7 N -0.58 -6.86 8.95 -189.86 -1.70 -8.56 16 8 C 0.31 2.31 8.22 179.32 1.47 3.78 16 9 N -0.68 -1.19 5.23 -330.40 -1.73 -2.91 16 10 C 0.15 -0.34 2.40 44.99 0.11 -0.23 16 11 H 0.07 0.00 7.26 -2.39 -0.02 -0.02 16 12 C -0.11 0.43 5.39 30.59 0.16 0.60 16 13 C -0.09 0.04 4.49 30.59 0.14 0.18 16 14 C -0.10 0.31 1.72 -11.54 -0.02 0.29 16 15 H 0.12 -0.93 7.40 -2.39 -0.02 -0.95 16 16 C 0.51 2.02 7.08 87.66 0.62 2.64 16 17 O -0.59 -8.16 15.98 -3.02 -0.05 -8.21 16 18 N -0.62 0.62 3.27 -871.89 -2.85 -2.23 16 19 C 0.08 -0.08 10.16 127.77 1.30 1.22 16 20 C 0.06 -0.60 8.77 127.77 1.12 0.52 16 21 C -0.11 0.65 4.84 30.59 0.15 0.80 16 22 C -0.13 0.68 5.51 30.59 0.17 0.85 16 23 S 0.12 0.62 21.69 -56.49 -1.23 -0.60 16 24 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 25 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.09 0.30 6.72 -2.39 -0.02 0.28 16 27 H 0.10 -0.15 7.96 -2.39 -0.02 -0.17 16 28 H 0.41 -4.83 8.74 -74.06 -0.65 -5.48 16 29 H -0.30 -3.48 7.11 99.48 0.71 -2.77 16 30 H -0.32 -4.45 7.11 99.48 0.71 -3.74 16 31 H 0.41 0.18 8.73 -92.71 -0.81 -0.63 16 32 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.06 0.19 8.10 -2.39 -0.02 0.17 16 35 H 0.07 0.14 8.10 -2.39 -0.02 0.12 16 36 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.11 -0.77 7.79 -2.39 -0.02 -0.79 16 38 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.07 -0.84 6.95 -2.39 -0.02 -0.86 16 40 H 0.09 -1.05 7.92 -2.39 -0.02 -1.07 16 41 H 0.09 -1.09 6.01 -2.39 -0.01 -1.11 16 42 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.10 -0.98 4.53 -2.39 -0.01 -0.99 16 44 H 0.09 -0.67 8.14 -2.39 -0.02 -0.68 16 45 H 0.07 -0.24 8.04 -2.39 -0.02 -0.26 16 Total: 0.00 -26.87 363.48 -0.75 -27.62 By element: Atomic # 1 Polarization: -19.32 SS G_CDS: -0.41 Total: -19.73 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.47 Total: 10.51 kcal Atomic # 7 Polarization: -7.43 SS G_CDS: -6.28 Total: -13.71 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.51 Total: -9.18 kcal Atomic # 14 Polarization: 2.90 SS G_CDS: 2.20 Total: 5.10 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -1.23 Total: -0.60 kcal Total: -26.87 -0.75 -27.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310062_15704122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.177 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds