Wall clock time and date at job start Mon Mar 8 2021 08:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46501 * 119.99801 * 2 1 4 4 C 1.34776 * 120.00064 * 179.72141 * 2 1 3 5 5 O 1.21285 * 120.00126 * 5.08563 * 4 2 1 6 6 C 1.50702 * 120.00142 * 185.08399 * 4 2 1 7 7 H 1.09005 * 109.46354 * 331.79186 * 6 4 2 8 8 C 1.52999 * 109.47078 * 91.78819 * 6 4 2 9 9 C 1.52992 * 109.46942 * 180.02562 * 8 6 4 10 10 C 1.53003 * 109.47250 * 299.99872 * 9 8 6 11 11 H 1.08999 * 109.47036 * 300.00447 * 10 9 8 12 12 N 1.46502 * 109.47300 * 180.02562 * 10 9 8 13 13 C 1.39142 * 120.00117 * 85.00151 * 12 10 9 14 14 N 1.32334 * 119.71634 * 0.02562 * 13 12 10 15 15 C 1.32007 * 121.64959 * 179.97438 * 14 13 12 16 16 C 1.37989 * 120.90018 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.32791 * 179.97438 * 16 15 14 18 18 O 1.42906 * 109.46706 * 120.00172 * 17 16 15 19 19 Si 1.86293 * 109.47122 * 0.02562 * 17 16 15 20 20 C 1.38906 * 119.34068 * 359.97438 * 16 15 14 21 21 C 1.38442 * 118.48819 * 359.75215 * 20 16 15 22 22 F 1.35099 * 120.46847 * 180.27128 * 21 20 16 23 23 C 1.52999 * 109.47044 * 60.00190 * 10 9 8 24 24 C 1.52991 * 109.47047 * 211.79155 * 6 4 2 25 25 H 1.09000 * 109.46713 * 90.00193 * 1 2 3 26 26 H 1.09004 * 109.46656 * 209.99957 * 1 2 3 27 27 H 1.08999 * 109.47241 * 329.99941 * 1 2 3 28 28 H 1.08998 * 109.47000 * 5.15278 * 3 2 1 29 29 H 1.08999 * 109.46908 * 125.14647 * 3 2 1 30 30 H 1.08995 * 109.46713 * 245.15110 * 3 2 1 31 31 H 1.09000 * 109.47438 * 300.00203 * 8 6 4 32 32 H 1.08999 * 109.46994 * 60.00028 * 8 6 4 33 33 H 1.09007 * 109.47438 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47466 * 60.00056 * 9 8 6 35 35 H 0.97005 * 120.00067 * 265.00221 * 12 10 9 36 36 H 1.08003 * 119.55525 * 180.02562 * 15 14 13 37 37 H 1.08999 * 109.47039 * 239.99643 * 17 16 15 38 38 H 0.96697 * 113.99802 * 299.99986 * 18 17 16 39 39 H 1.48501 * 110.00214 * 58.67791 * 19 17 16 40 40 H 1.48500 * 110.00081 * 179.97438 * 19 17 16 41 41 H 1.08002 * 120.74969 * 179.97438 * 20 16 15 42 42 H 1.09000 * 109.47438 * 180.02562 * 23 10 9 43 43 H 1.09011 * 109.47041 * 59.99773 * 23 10 9 44 44 H 1.08998 * 109.47671 * 299.99677 * 24 6 4 45 45 H 1.09000 * 109.47841 * 59.99797 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1390 -1.1672 0.0057 5 8 1.5362 -2.2159 -0.0823 6 6 3.6416 -1.1692 0.1213 7 1 4.0395 -0.2455 -0.2990 8 6 4.0395 -1.2718 1.5951 9 6 5.5649 -1.2732 1.7125 10 6 6.1343 -2.4687 0.9462 11 1 5.7367 -3.3925 1.3664 12 7 7.5950 -2.4704 1.0591 13 6 8.2068 -3.0567 2.1628 14 7 7.4638 -3.6116 3.1069 15 6 8.0039 -4.1786 4.1696 16 6 9.3734 -4.2129 4.3355 17 6 9.9762 -4.8632 5.5540 18 8 10.8267 -5.9378 5.1488 19 14 8.6162 -5.5247 6.6418 20 6 10.1907 -3.6421 3.3682 21 6 9.5966 -3.0596 2.2617 22 9 10.3536 -2.4976 1.2940 23 6 5.7364 -2.3662 -0.5276 24 6 4.2104 -2.3649 -0.6450 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.4928 2.0951 0.0923 29 1 2.8915 1.2876 0.8403 30 1 2.7532 1.3674 -0.9325 31 1 3.6342 -0.4198 2.1411 32 1 3.6415 -2.1953 2.0155 33 1 5.8485 -1.3467 2.7625 34 1 5.9626 -0.3494 1.2923 35 1 8.1357 -2.0629 0.3645 36 1 7.3654 -4.6218 4.9194 37 1 10.5594 -4.1273 6.1075 38 1 10.3736 -6.6313 4.6499 39 1 7.7948 -6.5057 5.8882 40 1 9.1977 -6.1691 7.8468 41 1 11.2653 -3.6557 3.4752 42 1 6.1417 -3.2181 -1.0736 43 1 6.1341 -1.4423 -0.9479 44 1 3.8125 -3.2886 -0.2247 45 1 3.9269 -2.2920 -1.6949 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17310062_17656566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:50:55 Heat of formation + Delta-G solvation = -67.918168 kcal Electronic energy + Delta-G solvation = -27848.431815 eV Core-core repulsion = 23781.913196 eV Total energy + Delta-G solvation = -4066.518619 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.93744 -41.60325 -41.24007 -39.31425 -37.99752 -36.60555 -35.97552 -33.29308 -32.31056 -31.81763 -30.37382 -28.78974 -27.20752 -26.34388 -25.12829 -23.77334 -23.48131 -22.70725 -21.24052 -20.09121 -19.29682 -18.52838 -18.34626 -18.03059 -17.63821 -17.23670 -17.01357 -16.69938 -16.38228 -16.15036 -15.94626 -15.50908 -15.44822 -15.09004 -14.89878 -14.57346 -14.33497 -14.30023 -14.07317 -13.87873 -13.60157 -13.51956 -13.45099 -13.33917 -13.20059 -12.88235 -12.69336 -12.53780 -12.30633 -12.15673 -12.07185 -11.74607 -11.37060 -11.07635 -10.79327 -10.72321 -10.60840 -10.51267 -9.71682 -8.75161 -4.89948 -0.07016 0.12331 1.31708 1.52979 1.62837 1.95056 1.99170 2.06944 2.55394 3.03405 3.28196 3.42514 3.48177 3.60658 3.64079 3.65929 3.86488 4.00042 4.01769 4.16432 4.19402 4.30231 4.34908 4.39979 4.43787 4.46021 4.46922 4.48007 4.54395 4.68162 4.73120 4.77137 4.81534 4.87816 4.89786 4.97919 4.99934 5.03904 5.14736 5.16064 5.26299 5.33170 5.46113 5.50388 5.99389 6.22425 6.31198 6.49436 6.98964 7.11111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.625 5.625 3 C 0.069 3.931 4 C 0.508 3.492 5 O -0.588 6.588 6 C -0.099 4.099 7 H 0.119 0.881 8 C -0.095 4.095 9 C -0.115 4.115 10 C 0.158 3.842 11 H 0.074 0.926 12 N -0.709 5.709 13 C 0.385 3.615 14 N -0.526 5.526 15 C 0.146 3.854 16 C -0.204 4.204 17 C -0.066 4.066 18 O -0.549 6.549 19 Si 0.763 3.237 20 C -0.040 4.040 21 C -0.037 4.037 22 F -0.140 7.140 23 C -0.117 4.117 24 C -0.096 4.096 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.417 0.583 36 H 0.180 0.820 37 H 0.131 0.869 38 H 0.386 0.614 39 H -0.280 1.280 40 H -0.300 1.300 41 H 0.154 0.846 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 7.223 0.694 7.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.357 5.357 3 C -0.073 4.073 4 C 0.298 3.702 5 O -0.468 6.468 6 C -0.120 4.120 7 H 0.137 0.863 8 C -0.133 4.133 9 C -0.154 4.154 10 C 0.053 3.947 11 H 0.092 0.908 12 N -0.341 5.341 13 C 0.146 3.854 14 N -0.243 5.243 15 C -0.011 4.011 16 C -0.209 4.209 17 C -0.175 4.175 18 O -0.357 6.357 19 Si 0.668 3.332 20 C -0.066 4.066 21 C -0.063 4.063 22 F -0.119 7.119 23 C -0.155 4.155 24 C -0.134 4.134 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.255 0.745 36 H 0.196 0.804 37 H 0.148 0.852 38 H 0.235 0.765 39 H -0.207 1.207 40 H -0.228 1.228 41 H 0.172 0.828 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.745 6.410 1.146 6.741 hybrid contribution 1.524 -0.810 -1.235 2.122 sum -0.221 5.600 -0.089 5.605 Atomic orbital electron populations 1.21763 0.79085 1.03406 1.02071 1.48013 1.07607 1.07261 1.72863 1.22131 0.98091 0.83865 1.03169 1.21267 0.91247 0.82890 0.74835 1.90686 1.71535 1.33141 1.51481 1.21411 0.89383 1.02267 0.98911 0.86276 1.21325 0.96103 1.02808 0.93113 1.21822 0.93948 0.98613 1.00994 1.20959 0.78195 0.99382 0.96128 0.90822 1.44701 1.07157 1.61267 1.20976 1.18568 0.86588 0.91080 0.89177 1.67371 1.38526 1.15131 1.03302 1.22668 0.92442 0.92739 0.93211 1.20885 0.94146 1.06097 0.99803 1.25006 1.03124 0.91837 0.97549 1.86582 1.38570 1.34329 1.76174 0.94210 0.77354 0.85555 0.76107 1.21418 1.02062 0.92593 0.90566 1.18121 0.88094 1.08472 0.91632 1.91467 1.75531 1.83568 1.61354 1.21750 0.95104 1.03934 0.94703 1.21278 0.94627 0.97353 1.00159 0.92744 0.92782 0.88398 0.88629 0.90229 0.90887 0.90039 0.92737 0.91641 0.90098 0.74544 0.80358 0.85170 0.76452 1.20678 1.22825 0.82813 0.90969 0.89190 0.92612 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.04 10.39 127.77 1.33 1.28 16 2 N -0.62 0.11 3.27 -871.86 -2.85 -2.74 16 3 C 0.07 -0.59 9.38 127.77 1.20 0.61 16 4 C 0.51 2.48 6.70 87.66 0.59 3.06 16 5 O -0.59 -8.61 15.84 -3.05 -0.05 -8.66 16 6 C -0.10 0.19 1.86 -11.54 -0.02 0.17 16 7 H 0.12 -0.88 6.58 -2.38 -0.02 -0.89 16 8 C -0.09 0.24 5.19 30.59 0.16 0.39 16 9 C -0.11 0.40 5.51 30.59 0.17 0.57 16 10 C 0.16 -0.25 2.47 44.99 0.11 -0.14 16 11 H 0.07 0.22 7.54 -2.39 -0.02 0.20 16 12 N -0.71 0.52 5.23 -324.29 -1.69 -1.18 16 13 C 0.38 1.08 7.47 133.08 0.99 2.07 16 14 N -0.53 -1.63 9.20 -193.04 -1.78 -3.40 16 15 C 0.15 -0.06 9.84 84.61 0.83 0.77 16 16 C -0.20 0.20 5.40 -19.76 -0.11 0.10 16 17 C -0.07 0.17 2.84 71.24 0.20 0.38 16 18 O -0.55 -0.46 12.78 -148.98 -1.90 -2.37 16 19 Si 0.76 -2.80 29.82 68.60 2.05 -0.76 16 20 C -0.04 -0.04 9.75 22.48 0.22 0.18 16 21 C -0.04 -0.11 7.35 22.58 0.17 0.05 16 22 F -0.14 -0.60 16.65 44.97 0.75 0.15 16 23 C -0.12 0.45 5.39 30.61 0.17 0.62 16 24 C -0.10 0.01 4.83 30.61 0.15 0.16 16 25 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.05 0.23 7.49 -2.39 -0.02 0.21 16 27 H 0.10 -0.62 7.88 -2.39 -0.02 -0.64 16 28 H 0.10 -1.08 7.77 -2.39 -0.02 -1.10 16 29 H 0.08 -0.86 7.27 -2.39 -0.02 -0.88 16 30 H 0.07 -0.75 7.83 -2.39 -0.02 -0.77 16 31 H 0.08 -0.38 7.66 -2.39 -0.02 -0.40 16 32 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 35 H 0.42 -1.35 8.08 -92.70 -0.75 -2.10 16 36 H 0.18 -0.88 4.88 -2.91 -0.01 -0.89 16 37 H 0.13 -0.61 7.96 -2.39 -0.02 -0.63 16 38 H 0.39 -1.67 8.70 -74.06 -0.64 -2.31 16 39 H -0.28 -0.10 7.11 99.48 0.71 0.61 16 40 H -0.30 -1.28 7.11 99.48 0.71 -0.58 16 41 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 42 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16 44 H 0.06 0.29 7.85 -2.39 -0.02 0.27 16 45 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -20.46 363.87 0.33 -20.13 By element: Atomic # 1 Polarization: -11.11 SS G_CDS: -0.33 Total: -11.44 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 6.15 Total: 10.27 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -6.33 Total: -7.32 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.95 Total: -11.03 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.75 Total: 0.15 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 2.05 Total: -0.76 kcal Total: -20.46 0.33 -20.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310062_17656566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.791 kcal (2) G-P(sol) polarization free energy of solvation -20.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds