Wall clock time and date at job start Mon Mar 8 2021 08:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47411 * 2 1 4 4 C 1.53003 * 109.47227 * 240.00051 * 2 1 3 5 5 O 1.45202 * 109.47441 * 119.99868 * 2 1 3 6 6 C 1.34641 * 116.99668 * 59.99887 * 5 2 1 7 7 O 1.21518 * 120.00066 * 0.02562 * 6 5 2 8 8 N 1.34770 * 119.99989 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99996 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47320 * 179.97438 * 9 8 6 11 11 C 1.53920 * 113.58806 * 184.99550 * 10 9 8 12 12 C 1.53067 * 86.84091 * 220.46871 * 11 10 9 13 13 C 1.52780 * 120.92300 * 259.74716 * 12 11 10 14 14 C 1.53648 * 83.31985 * 208.46742 * 13 12 11 15 15 N 1.46684 * 120.99411 * 150.36498 * 12 11 10 16 16 C 1.38405 * 110.99920 * 264.01830 * 15 12 11 17 17 N 1.32494 * 119.21949 * 113.73593 * 16 15 12 18 18 C 1.32279 * 120.74501 * 179.97438 * 17 16 15 19 19 C 1.38607 * 119.19099 * 0.02562 * 18 17 16 20 20 C 1.50707 * 120.71745 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.46879 * 300.00322 * 20 19 18 22 22 Si 1.86295 * 109.47138 * 179.97438 * 20 19 18 23 23 C 1.38602 * 118.56244 * 0.26856 * 19 18 17 24 24 N 1.32277 * 119.19341 * 359.45249 * 23 19 18 25 25 C 1.53063 * 87.86472 * 25.00019 * 12 11 10 26 26 H 1.08998 * 109.46922 * 299.99719 * 1 2 3 27 27 H 1.08996 * 109.46767 * 59.99877 * 1 2 3 28 28 H 1.09002 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47723 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47219 * 300.00310 * 3 2 1 31 31 H 1.09004 * 109.46805 * 59.99761 * 3 2 1 32 32 H 1.09002 * 109.47149 * 299.99868 * 4 2 1 33 33 H 1.09001 * 109.46810 * 60.00053 * 4 2 1 34 34 H 1.09006 * 109.46979 * 180.02562 * 4 2 1 35 35 H 0.96995 * 120.00054 * 359.97438 * 8 6 5 36 36 H 1.08999 * 109.47550 * 59.99924 * 9 8 6 37 37 H 1.09003 * 109.47411 * 299.99739 * 9 8 6 38 38 H 1.08997 * 112.82494 * 316.11250 * 10 9 8 39 39 H 1.09005 * 113.64620 * 105.98118 * 11 10 9 40 40 H 1.08997 * 113.65466 * 334.95731 * 11 10 9 41 41 H 1.09001 * 114.21655 * 322.05085 * 13 12 11 42 42 H 1.09005 * 114.21083 * 94.68940 * 13 12 11 43 43 H 1.08996 * 113.44174 * 270.52195 * 14 13 12 44 44 H 1.09007 * 113.44152 * 140.16849 * 14 13 12 45 45 H 1.07995 * 120.40021 * 179.97438 * 18 17 16 46 46 H 1.09004 * 109.46436 * 59.99858 * 20 19 18 47 47 H 0.96704 * 113.99850 * 180.02562 * 21 20 19 48 48 H 1.48503 * 109.99867 * 60.00003 * 22 20 19 49 49 H 1.48502 * 109.99729 * 181.32009 * 22 20 19 50 50 H 1.07992 * 120.40190 * 179.72607 * 23 19 18 51 51 H 1.08995 * 113.65030 * 89.48614 * 25 12 11 52 52 H 1.08997 * 113.65431 * 220.52014 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0672 -2.6654 2.4171 9 6 1.6741 -4.0669 2.5830 10 6 2.2741 -4.6149 3.8794 11 6 2.0211 -6.1188 4.0877 12 6 1.7723 -5.7866 5.5610 13 6 2.8570 -6.0176 6.6119 14 6 1.6554 -6.2038 7.5513 15 7 0.8559 -6.5942 6.3732 16 6 -0.4035 -6.0220 6.4168 17 7 -1.4202 -6.6519 5.8467 18 6 -2.6367 -6.1328 5.8708 19 6 -2.8398 -4.9155 6.5016 20 6 -4.2112 -4.2924 6.5491 21 8 -4.6762 -4.0625 5.2177 22 14 -4.1262 -2.6731 7.4663 23 6 -1.7532 -4.2806 7.0824 24 7 -0.5639 -4.8571 7.0273 25 6 1.3944 -4.3708 5.1187 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2490 35 1 2.6268 -2.2366 3.0832 36 1 2.0412 -4.6498 1.7384 37 1 0.5872 -4.1365 2.6275 38 1 3.3152 -4.3242 4.0195 39 1 2.9029 -6.7376 3.9218 40 1 1.1378 -6.4898 3.5679 41 1 3.4461 -6.9212 6.4552 42 1 3.4650 -5.1389 6.8275 43 1 1.3198 -5.2763 8.0151 44 1 1.7891 -7.0111 8.2715 45 1 -3.4613 -6.6509 5.4040 46 1 -4.8981 -4.9650 7.0629 47 1 -5.5551 -3.6617 5.1717 48 1 -3.1925 -1.7471 6.7764 49 1 -5.4781 -2.0640 7.5478 50 1 -1.8768 -3.3290 7.5778 51 1 0.3358 -4.2530 4.8873 52 1 1.7746 -3.5905 5.7780 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17310064_12175864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:50:59 Heat of formation + Delta-G solvation = 29.178360 kcal Electronic energy + Delta-G solvation = -33993.608514 eV Core-core repulsion = 29577.344811 eV Total energy + Delta-G solvation = -4416.263703 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.30467 -41.90870 -41.40311 -38.89324 -38.15101 -37.52394 -35.65519 -34.98578 -34.73340 -33.77257 -30.24957 -28.89980 -28.44927 -28.36172 -27.08106 -26.36210 -25.92509 -24.64901 -23.29343 -23.16675 -21.98596 -21.00509 -19.93990 -19.24004 -19.18533 -18.59546 -18.29788 -17.79388 -17.42268 -17.14853 -16.81214 -16.59427 -16.36465 -16.07061 -15.80799 -15.61332 -15.55828 -15.15469 -14.84847 -14.81059 -14.63692 -14.41413 -14.07803 -13.69725 -13.52709 -13.43083 -13.26744 -13.11703 -12.99850 -12.95112 -12.93679 -12.76711 -12.58329 -12.44969 -12.40415 -12.32756 -12.12637 -11.98674 -11.86525 -11.61108 -11.47655 -11.30926 -11.18182 -11.01769 -10.50516 -10.44724 -10.34366 -9.83409 -5.02141 -0.46626 -0.10356 1.06512 1.16515 1.52122 1.65265 1.87631 2.16576 2.37568 2.87091 3.01945 3.15482 3.24268 3.33337 3.38440 3.41979 3.49285 3.63750 3.66465 3.67249 3.72158 3.85372 3.87305 3.94432 4.14137 4.17497 4.31144 4.39573 4.41051 4.50915 4.53842 4.56343 4.56848 4.57903 4.65552 4.68771 4.72780 4.73494 4.77963 4.80935 4.85686 4.87235 4.95417 4.99481 5.00836 5.12097 5.15993 5.19235 5.22356 5.26091 5.33689 5.50259 5.62540 6.01197 6.29588 6.49678 6.91112 7.24085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.367 6.367 6 C 0.641 3.359 7 O -0.598 6.598 8 N -0.696 5.696 9 C 0.155 3.845 10 C -0.103 4.103 11 C -0.107 4.107 12 C 0.049 3.951 13 C -0.099 4.099 14 C 0.007 3.993 15 N -0.432 5.432 16 C 0.453 3.547 17 N -0.526 5.526 18 C 0.174 3.826 19 C -0.189 4.189 20 C -0.072 4.072 21 O -0.558 6.558 22 Si 0.760 3.240 23 C 0.160 3.840 24 N -0.533 5.533 25 C -0.117 4.117 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.419 0.581 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.185 0.815 46 H 0.110 0.890 47 H 0.401 0.599 48 H -0.295 1.295 49 H -0.276 1.276 50 H 0.192 0.808 51 H 0.050 0.950 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 3.691 5.742 6.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.395 3.605 7 O -0.489 6.489 8 N -0.357 5.357 9 C 0.033 3.967 10 C -0.122 4.122 11 C -0.146 4.146 12 C -0.041 4.041 13 C -0.137 4.137 14 C -0.121 4.121 15 N -0.154 5.154 16 C 0.098 3.902 17 N -0.241 5.241 18 C 0.008 3.992 19 C -0.193 4.193 20 C -0.181 4.181 21 O -0.369 6.369 22 Si 0.664 3.336 23 C -0.007 4.007 24 N -0.250 5.250 25 C -0.156 4.156 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.256 0.744 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.202 0.798 46 H 0.128 0.872 47 H 0.252 0.748 48 H -0.222 1.222 49 H -0.202 1.202 50 H 0.208 0.792 51 H 0.069 0.931 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.189 2.925 4.927 6.134 hybrid contribution -2.163 0.943 -0.773 2.483 sum 0.026 3.868 4.154 5.676 Atomic orbital electron populations 1.22481 0.94378 1.03446 1.03522 1.22371 0.94241 0.92763 0.81556 1.21892 1.02614 0.90596 1.04278 1.22480 1.01811 1.02132 0.97338 1.86310 1.71485 1.23051 1.47337 1.18384 0.78751 0.80902 0.82512 1.90914 1.42354 1.71116 1.44498 1.44671 1.55277 1.12600 1.23147 1.21252 0.98424 0.78626 0.98417 1.22679 1.01439 0.96369 0.91669 1.22844 1.02755 0.95390 0.93619 1.23678 0.92894 0.92887 0.94603 1.22963 0.94625 1.04764 0.91317 1.23956 0.92285 1.02613 0.93243 1.66439 0.95999 1.42717 1.10281 1.22013 0.93267 0.85855 0.89082 1.68182 1.00370 1.35672 1.19843 1.23445 0.93734 0.91601 0.90469 1.21246 0.97598 0.97879 1.02576 1.24784 0.93125 1.10797 0.89419 1.86537 1.40302 1.84499 1.25549 0.94365 0.79557 0.73375 0.86345 1.23343 0.86395 0.98531 0.92417 1.68504 1.26100 1.10615 1.19809 1.23124 0.98508 0.96356 0.97612 0.92096 0.89249 0.92209 0.90907 0.88216 0.91207 0.92028 0.89340 0.91641 0.74382 0.91111 0.93854 0.84756 0.88113 0.91440 0.87135 0.87142 0.88251 0.88834 0.79811 0.87188 0.74776 1.22246 1.20218 0.79191 0.93114 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 8.37 71.98 0.60 -0.41 16 2 C 0.13 0.59 1.13 -10.79 -0.01 0.58 16 3 C -0.14 0.15 8.85 71.98 0.64 0.79 16 4 C -0.18 -0.87 8.37 71.98 0.60 -0.27 16 5 O -0.37 -2.71 9.94 -55.50 -0.55 -3.27 16 6 C 0.64 6.10 8.06 129.79 1.05 7.14 16 7 O -0.60 -9.34 11.88 19.78 0.24 -9.11 16 8 N -0.70 -2.05 5.56 -590.84 -3.28 -5.33 16 9 C 0.16 0.44 5.51 86.38 0.48 0.91 16 10 C -0.10 0.27 3.75 -10.17 -0.04 0.23 16 11 C -0.11 -0.01 7.52 30.93 0.23 0.22 16 12 C 0.05 0.02 1.14 -0.16 0.00 0.02 16 13 C -0.10 0.44 8.21 30.74 0.25 0.69 16 14 C 0.01 0.00 7.57 82.69 0.63 0.63 16 15 N -0.43 -2.47 6.53 -702.03 -4.58 -7.05 16 16 C 0.45 3.63 5.80 261.49 1.52 5.15 16 17 N -0.53 -5.40 10.47 -197.99 -2.07 -7.47 16 18 C 0.17 0.92 10.92 84.71 0.93 1.85 16 19 C -0.19 -0.32 5.43 -19.69 -0.11 -0.43 16 20 C -0.07 0.24 2.84 71.24 0.20 0.45 16 21 O -0.56 0.09 12.76 -148.98 -1.90 -1.81 16 22 Si 0.76 -3.73 29.87 68.60 2.05 -1.68 16 23 C 0.16 0.25 9.92 84.71 0.84 1.09 16 24 N -0.53 -2.52 6.80 -198.00 -1.35 -3.87 16 25 C -0.12 -0.04 5.78 30.93 0.18 0.14 16 26 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.06 0.70 5.88 -2.39 -0.01 0.68 16 29 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.06 0.66 5.88 -2.39 -0.01 0.64 16 33 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 35 H 0.42 -1.07 8.58 -92.71 -0.80 -1.87 16 36 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.04 0.35 7.85 -2.39 -0.02 0.33 16 38 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 39 H 0.10 -0.30 8.14 -2.38 -0.02 -0.32 16 40 H 0.07 0.35 8.10 -2.39 -0.02 0.34 16 41 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.11 -0.95 8.14 -2.38 -0.02 -0.97 16 43 H 0.10 0.04 6.61 -2.39 -0.02 0.02 16 44 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 45 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 46 H 0.11 -0.91 7.96 -2.38 -0.02 -0.93 16 47 H 0.40 -3.32 8.74 -74.05 -0.65 -3.97 16 48 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 49 H -0.28 0.26 7.11 99.48 0.71 0.97 16 50 H 0.19 -0.81 5.04 -2.91 -0.01 -0.83 16 51 H 0.05 0.35 6.55 -2.39 -0.02 0.33 16 52 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: 0.00 -24.01 410.46 -3.93 -27.93 By element: Atomic # 1 Polarization: -6.67 SS G_CDS: -0.46 Total: -7.13 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 7.98 Total: 18.78 kcal Atomic # 7 Polarization: -12.44 SS G_CDS: -11.29 Total: -23.73 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -2.22 Total: -14.18 kcal Atomic # 14 Polarization: -3.73 SS G_CDS: 2.05 Total: -1.68 kcal Total: -24.01 -3.93 -27.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310064_12175864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.112 kcal (2) G-P(sol) polarization free energy of solvation -24.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds