Wall clock time and date at job start Mon Mar 8 2021 08:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47017 * 2 1 4 4 C 1.52996 * 109.46926 * 240.00160 * 2 1 3 5 5 O 1.45197 * 109.47302 * 119.99708 * 2 1 3 6 6 C 1.34638 * 116.99581 * 60.00022 * 5 2 1 7 7 O 1.21509 * 120.00662 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99696 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99733 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46772 * 179.97438 * 9 8 6 11 11 C 1.53928 * 113.58327 * 175.00154 * 10 9 8 12 12 C 1.53065 * 86.83896 * 139.53517 * 11 10 9 13 13 C 1.52784 * 120.92831 * 209.74272 * 12 11 10 14 14 C 1.53647 * 83.32224 * 208.46875 * 13 12 11 15 15 N 1.46693 * 120.99462 * 100.36142 * 12 11 10 16 16 C 1.39005 * 110.99656 * 264.02286 * 15 12 11 17 17 N 1.32397 * 119.70435 * 291.55136 * 16 15 12 18 18 C 1.31969 * 121.62089 * 180.02562 * 17 16 15 19 19 C 1.38019 * 120.85868 * 359.97438 * 18 17 16 20 20 C 1.50703 * 120.33871 * 180.02562 * 19 18 17 21 21 O 1.42896 * 109.47283 * 245.00047 * 20 19 18 22 22 Si 1.86298 * 109.46891 * 4.99903 * 20 19 18 23 23 C 1.38888 * 119.32837 * 0.27250 * 19 18 17 24 24 C 1.38301 * 118.50260 * 359.46612 * 23 19 18 25 25 C 1.53065 * 87.86518 * 334.99813 * 12 11 10 26 26 H 1.09004 * 109.47097 * 300.00201 * 1 2 3 27 27 H 1.08992 * 109.47120 * 60.00049 * 1 2 3 28 28 H 1.08997 * 109.46722 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47025 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47216 * 300.00033 * 3 2 1 31 31 H 1.09004 * 109.47351 * 59.99955 * 3 2 1 32 32 H 1.08997 * 109.47247 * 299.99466 * 4 2 1 33 33 H 1.08992 * 109.47392 * 59.99957 * 4 2 1 34 34 H 1.09005 * 109.46661 * 180.02562 * 4 2 1 35 35 H 0.96998 * 120.00173 * 359.97438 * 8 6 5 36 36 H 1.09000 * 109.47477 * 60.00080 * 9 8 6 37 37 H 1.08994 * 109.47489 * 300.00091 * 9 8 6 38 38 H 1.08997 * 112.83267 * 43.89291 * 10 9 8 39 39 H 1.08998 * 113.65102 * 25.04825 * 11 10 9 40 40 H 1.09000 * 113.64666 * 254.01939 * 11 10 9 41 41 H 1.08998 * 114.21095 * 322.05349 * 13 12 11 42 42 H 1.09004 * 114.20793 * 94.68845 * 13 12 11 43 43 H 1.09004 * 113.43692 * 270.52695 * 14 13 12 44 44 H 1.09001 * 113.44247 * 140.16679 * 14 13 12 45 45 H 1.07999 * 119.57220 * 179.97438 * 18 17 16 46 46 H 1.08999 * 109.47268 * 124.99743 * 20 19 18 47 47 H 0.96700 * 114.00230 * 59.99490 * 21 20 19 48 48 H 1.48499 * 109.99982 * 180.02562 * 22 20 19 49 49 H 1.48506 * 110.00119 * 301.32050 * 22 20 19 50 50 H 1.08000 * 120.74481 * 179.69818 * 23 19 18 51 51 H 1.07996 * 120.44688 * 180.23730 * 24 23 19 52 52 H 1.08993 * 113.65247 * 139.48832 * 25 12 11 53 53 H 1.09002 * 113.65183 * 270.51876 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3383 7 8 0.9517 -2.5097 0.5036 8 7 2.0673 -2.6653 2.4172 9 6 1.6741 -4.0668 2.5832 10 6 2.2742 -4.6147 3.8796 11 6 1.8204 -6.0478 4.2108 12 6 3.2629 -6.3126 4.6490 13 6 3.8755 -7.7073 4.5325 14 6 4.7225 -7.2393 5.7259 15 7 3.6356 -6.3005 6.0678 16 6 4.1456 -5.0616 6.4383 17 7 5.3158 -4.6650 5.9627 18 6 5.8355 -3.4969 6.2897 19 6 5.1716 -2.6411 7.1452 20 6 5.7758 -1.3097 7.5103 21 8 6.0781 -1.2906 8.9068 22 14 7.3400 -1.0485 6.5327 23 6 3.9435 -3.0218 7.6704 24 6 3.4214 -4.2493 7.3052 25 6 3.6948 -5.1828 3.7110 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.6269 -2.2364 3.0834 36 1 2.0413 -4.6497 1.7385 37 1 0.5873 -4.1365 2.6275 38 1 2.1777 -3.9224 4.7160 39 1 1.5164 -6.6232 3.3364 40 1 1.0990 -6.1005 5.0262 41 1 3.1862 -8.5192 4.7646 42 1 4.4417 -7.8717 3.6156 43 1 5.6478 -6.7432 5.4328 44 1 4.8788 -8.0137 6.4770 45 1 6.7929 -3.2067 5.8826 46 1 5.0670 -0.5139 7.2811 47 1 6.7045 -1.9735 9.1830 48 1 7.9459 0.2609 6.8841 49 1 8.3025 -2.1443 6.8121 50 1 3.4065 -2.3721 8.3457 51 1 2.4670 -4.5750 7.6917 52 1 4.4736 -4.5433 4.1263 53 1 3.9148 -5.5164 2.6969 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17310064_13915762.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:03 Heat of formation + Delta-G solvation = 13.659174 kcal Electronic energy + Delta-G solvation = -34087.660979 eV Core-core repulsion = 29736.150224 eV Total energy + Delta-G solvation = -4351.510755 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.204 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.08890 -41.77130 -40.73784 -38.75695 -38.00187 -37.31132 -35.50143 -34.58580 -33.63755 -33.13608 -29.69920 -28.74883 -28.35746 -28.28099 -26.91350 -26.04259 -24.94447 -24.41140 -23.07381 -22.79600 -21.76439 -20.80556 -19.79855 -19.10802 -18.73267 -17.98892 -17.74408 -17.56916 -17.32249 -17.08197 -16.55271 -16.43044 -16.12584 -15.92682 -15.77289 -15.57195 -15.38658 -14.90249 -14.57237 -14.47208 -14.31792 -14.30194 -14.06361 -13.76325 -13.47906 -13.33642 -13.30425 -13.11820 -12.90271 -12.85091 -12.78748 -12.71745 -12.48660 -12.43313 -12.31925 -12.18438 -12.12879 -11.93450 -11.63436 -11.37844 -11.14639 -10.93325 -10.91876 -10.66458 -10.57926 -10.24327 -10.18733 -9.70593 -4.97003 -0.15109 0.18263 1.18300 1.24433 1.54908 1.77100 1.92557 2.48922 2.62099 3.09218 3.17885 3.35805 3.45557 3.52904 3.57302 3.61724 3.66828 3.76049 3.81113 3.86224 3.88819 3.96053 4.04651 4.14458 4.19650 4.31606 4.45811 4.50652 4.53349 4.54949 4.62361 4.64561 4.69748 4.75685 4.76582 4.77797 4.80683 4.83537 4.86545 4.89298 4.92699 4.94176 4.98289 5.05636 5.11291 5.14419 5.14884 5.24583 5.26611 5.28302 5.36653 5.44045 5.52546 5.59905 6.18776 6.39124 6.41133 6.77161 7.34414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.643 3.357 7 O -0.595 6.595 8 N -0.699 5.699 9 C 0.154 3.846 10 C -0.110 4.110 11 C -0.104 4.104 12 C 0.046 3.954 13 C -0.124 4.124 14 C 0.003 3.997 15 N -0.422 5.422 16 C 0.262 3.738 17 N -0.509 5.509 18 C 0.107 3.893 19 C -0.170 4.170 20 C -0.070 4.070 21 O -0.545 6.545 22 Si 0.757 3.243 23 C -0.042 4.042 24 C -0.149 4.149 25 C -0.135 4.135 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.414 0.586 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.169 0.831 46 H 0.133 0.867 47 H 0.386 0.614 48 H -0.300 1.300 49 H -0.282 1.282 50 H 0.151 0.849 51 H 0.146 0.854 52 H 0.084 0.916 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 0.897 -0.907 1.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.359 5.359 9 C 0.032 3.968 10 C -0.129 4.129 11 C -0.142 4.142 12 C -0.043 4.043 13 C -0.162 4.162 14 C -0.125 4.125 15 N -0.143 5.143 16 C 0.033 3.967 17 N -0.221 5.221 18 C -0.051 4.051 19 C -0.172 4.172 20 C -0.180 4.180 21 O -0.353 6.353 22 Si 0.663 3.337 23 C -0.068 4.068 24 C -0.170 4.170 25 C -0.174 4.174 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.185 0.815 46 H 0.151 0.849 47 H 0.235 0.765 48 H -0.227 1.227 49 H -0.209 1.209 50 H 0.169 0.831 51 H 0.164 0.836 52 H 0.102 0.898 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.934 0.609 -1.366 1.763 hybrid contribution 0.514 0.377 1.655 1.774 sum 1.448 0.987 0.289 1.776 Atomic orbital electron populations 1.22485 0.94222 1.03659 1.03478 1.22330 0.94327 0.92609 0.81537 1.21893 1.02580 0.90819 1.04197 1.22478 1.01728 1.02232 0.97351 1.86309 1.71511 1.23236 1.47220 1.18343 0.78760 0.80818 0.82469 1.90908 1.42341 1.71049 1.44346 1.44728 1.55215 1.12798 1.23120 1.21345 0.99724 0.78274 0.97447 1.22676 0.96587 0.97246 0.96373 1.22854 0.95074 0.94224 1.02090 1.23193 0.98092 0.96310 0.86672 1.23038 0.98659 0.95794 0.98678 1.23806 0.94977 0.95319 0.98397 1.66984 1.24927 1.03655 1.18720 1.20556 0.89781 0.92761 0.93555 1.67684 1.13133 1.17273 1.24044 1.22682 0.99250 0.88771 0.94389 1.21263 0.96928 0.98554 1.00458 1.25035 1.09778 0.96306 0.86844 1.86599 1.66933 1.59097 1.22702 0.94208 0.74651 0.76612 0.88244 1.21613 0.93952 0.95163 0.96038 1.21884 1.02105 0.94532 0.98517 1.23483 0.96938 0.96737 1.00197 0.91966 0.89518 0.91832 0.90985 0.88440 0.91163 0.91825 0.89547 0.91798 0.74960 0.91158 0.91536 0.89036 0.87313 0.90350 0.88066 0.88989 0.89022 0.89771 0.81492 0.84908 0.76479 1.22746 1.20878 0.83106 0.83622 0.89805 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 2 C 0.13 0.33 1.13 -10.79 -0.01 0.32 16 3 C -0.14 0.36 8.85 71.98 0.64 0.99 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 5 O -0.37 -1.85 9.94 -55.48 -0.55 -2.40 16 6 C 0.64 4.19 8.06 129.79 1.05 5.23 16 7 O -0.60 -7.14 11.88 19.81 0.24 -6.91 16 8 N -0.70 -0.28 5.56 -590.84 -3.29 -3.57 16 9 C 0.15 -0.19 5.51 86.38 0.48 0.29 16 10 C -0.11 0.42 3.51 -10.17 -0.04 0.38 16 11 C -0.10 0.39 7.52 30.93 0.23 0.62 16 12 C 0.05 -0.10 1.20 -0.15 0.00 -0.10 16 13 C -0.12 0.36 8.21 30.74 0.25 0.62 16 14 C 0.00 0.00 7.58 82.70 0.63 0.63 16 15 N -0.42 -0.48 6.43 -694.98 -4.47 -4.95 16 16 C 0.26 0.34 4.79 133.06 0.64 0.98 16 17 N -0.51 -0.60 6.08 -193.27 -1.18 -1.78 16 18 C 0.11 -0.18 9.84 84.62 0.83 0.65 16 19 C -0.17 0.50 5.36 -19.76 -0.11 0.40 16 20 C -0.07 0.28 2.82 71.24 0.20 0.48 16 21 O -0.55 0.18 12.84 -148.98 -1.91 -1.73 16 22 Si 0.76 -3.15 29.91 68.60 2.05 -1.09 16 23 C -0.04 0.10 9.83 22.44 0.22 0.32 16 24 C -0.15 0.07 9.98 22.50 0.22 0.30 16 25 C -0.14 0.38 6.71 30.93 0.21 0.58 16 26 H 0.06 0.15 8.14 -2.39 -0.02 0.14 16 27 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 29 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.10 -0.55 8.14 -2.38 -0.02 -0.57 16 31 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 33 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 35 H 0.41 -1.41 8.58 -92.71 -0.80 -2.21 16 36 H 0.07 0.00 7.85 -2.39 -0.02 -0.02 16 37 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.09 -0.26 7.97 -2.39 -0.02 -0.28 16 39 H 0.11 -0.61 8.10 -2.39 -0.02 -0.63 16 40 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.09 -0.42 8.14 -2.38 -0.02 -0.44 16 43 H 0.09 0.17 6.61 -2.38 -0.02 0.16 16 44 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.17 -0.81 4.85 -2.91 -0.01 -0.83 16 46 H 0.13 -0.82 7.96 -2.39 -0.02 -0.84 16 47 H 0.39 -2.02 8.70 -74.06 -0.64 -2.66 16 48 H -0.30 -1.16 7.11 99.48 0.71 -0.45 16 49 H -0.28 0.01 7.01 99.48 0.70 0.71 16 50 H 0.15 -0.70 8.06 -2.91 -0.02 -0.72 16 51 H 0.15 -0.26 8.06 -2.91 -0.02 -0.29 16 52 H 0.08 -0.05 5.31 -2.39 -0.01 -0.07 16 53 H 0.10 -0.34 7.90 -2.39 -0.02 -0.36 16 Total: 0.00 -16.07 413.81 -2.94 -19.01 By element: Atomic # 1 Polarization: -8.89 SS G_CDS: -0.48 Total: -9.37 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.65 Total: 12.79 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -8.93 Total: -10.29 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -2.23 Total: -11.04 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.05 Total: -1.09 kcal Total: -16.07 -2.94 -19.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310064_13915762.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.669 kcal (2) G-P(sol) polarization free energy of solvation -16.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds