Wall clock time and date at job start Mon Mar 8 2021 08:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.53001 * 109.47090 * 240.00203 * 2 1 3 5 5 O 1.45200 * 109.47240 * 119.99780 * 2 1 3 6 6 C 1.34637 * 116.99859 * 59.99723 * 5 2 1 7 7 O 1.21508 * 119.99977 * 0.02562 * 6 5 2 8 8 N 1.34771 * 120.00087 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00202 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47086 * 180.02562 * 9 8 6 11 11 C 1.53920 * 113.58567 * 175.00192 * 10 9 8 12 12 C 1.53069 * 86.84102 * 139.52694 * 11 10 9 13 13 C 1.52884 * 120.88091 * 209.72942 * 12 11 10 14 14 C 1.53653 * 83.28647 * 259.45339 * 13 12 11 15 15 N 1.46697 * 120.99030 * 100.36021 * 12 11 10 16 16 C 1.38609 * 111.00042 * 347.91468 * 15 12 11 17 17 N 1.29693 * 124.94677 * 72.68913 * 16 15 12 18 18 C 1.32123 * 116.86378 * 179.97438 * 17 16 15 19 19 C 1.33327 * 114.58222 * 359.97438 * 18 17 16 20 20 C 1.50698 * 125.95134 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47046 * 119.97400 * 20 19 18 22 22 Si 1.86302 * 109.47363 * 359.97438 * 20 19 18 23 23 S 1.70968 * 124.95328 * 252.38163 * 16 15 12 24 24 C 1.53063 * 87.86380 * 335.00223 * 12 11 10 25 25 H 1.09003 * 109.47590 * 299.99806 * 1 2 3 26 26 H 1.09000 * 109.47298 * 60.00234 * 1 2 3 27 27 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47195 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46910 * 300.00003 * 3 2 1 30 30 H 1.08999 * 109.47280 * 59.99710 * 3 2 1 31 31 H 1.09000 * 109.46760 * 299.99779 * 4 2 1 32 32 H 1.09000 * 109.47407 * 59.99630 * 4 2 1 33 33 H 1.08993 * 109.47054 * 180.02562 * 4 2 1 34 34 H 0.97009 * 119.99828 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.46994 * 60.00515 * 9 8 6 36 36 H 1.09003 * 109.46931 * 300.00322 * 9 8 6 37 37 H 1.08997 * 112.83002 * 43.88276 * 10 9 8 38 38 H 1.08998 * 113.65095 * 25.04122 * 11 10 9 39 39 H 1.08993 * 113.64953 * 254.01542 * 11 10 9 40 40 H 1.09000 * 114.21259 * 145.88962 * 13 12 11 41 41 H 1.08997 * 114.24210 * 13.01765 * 13 12 11 42 42 H 1.09002 * 113.43794 * 219.85684 * 14 13 12 43 43 H 1.08998 * 113.43828 * 89.55157 * 14 13 12 44 44 H 1.08001 * 122.70516 * 179.97438 * 18 17 16 45 45 H 1.08998 * 109.47199 * 239.97442 * 20 19 18 46 46 H 0.96700 * 114.00026 * 179.97438 * 21 20 19 47 47 H 1.48497 * 109.99621 * 298.68157 * 22 20 19 48 48 H 1.48497 * 110.00000 * 59.99686 * 22 20 19 49 49 H 1.08996 * 113.65454 * 139.48502 * 24 12 11 50 50 H 1.09001 * 113.64829 * 270.50876 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9515 -2.5096 0.5037 8 7 2.0680 -2.6656 2.4167 9 6 1.6748 -4.0671 2.5827 10 6 2.2748 -4.6150 3.8792 11 6 1.8211 -6.0480 4.2104 12 6 3.2636 -6.3129 4.6484 13 6 3.8754 -7.7091 4.5315 14 6 3.5634 -7.7750 6.0346 15 7 3.6365 -6.3009 6.0672 16 6 2.6186 -5.7701 6.8438 17 7 1.5000 -6.3688 7.1128 18 6 0.6397 -5.7137 7.8720 19 6 1.0510 -4.5070 8.2621 20 6 0.2784 -3.5464 9.1289 21 8 1.0227 -3.2734 10.3179 22 14 -1.3627 -4.3020 9.5834 23 16 2.6575 -4.2337 7.5930 24 6 3.6954 -5.1831 3.7104 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7216 -1.2490 34 1 2.6277 -2.2367 3.0829 35 1 2.0413 -4.6498 1.7377 36 1 0.5879 -4.1365 2.6280 37 1 2.1785 -3.9226 4.7155 38 1 1.5169 -6.6234 3.3361 39 1 1.0998 -6.1007 5.0258 40 1 4.9395 -7.7126 4.2953 41 1 3.2945 -8.4028 3.9237 42 1 4.3450 -8.2608 6.6187 43 1 2.5695 -8.1648 6.2544 44 1 -0.3193 -6.1228 8.1537 45 1 0.1121 -2.6177 8.5831 46 1 0.5847 -2.6604 10.9240 47 1 -2.1593 -4.5613 8.3573 48 1 -1.1497 -5.5690 10.3280 49 1 4.4743 -4.5435 4.1256 50 1 3.9154 -5.5167 2.6963 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17310064_15704118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:09 Heat of formation + Delta-G solvation = 17.248483 kcal Electronic energy + Delta-G solvation = -32046.003062 eV Core-core repulsion = 27783.800197 eV Total energy + Delta-G solvation = -4262.202864 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.160 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.05239 -41.63802 -40.39317 -38.71905 -37.93610 -37.35504 -35.40238 -34.54970 -32.88691 -30.38480 -28.84111 -28.31020 -28.27108 -27.08386 -26.28826 -24.87692 -24.51343 -23.08652 -21.97149 -21.44256 -20.75362 -19.55044 -19.14080 -19.00766 -18.54422 -17.72511 -17.44205 -17.28578 -17.13949 -16.44945 -16.29590 -16.13043 -15.65576 -15.62298 -15.46347 -15.13562 -15.07832 -14.64089 -14.40622 -14.27486 -13.99646 -13.79106 -13.57293 -13.40122 -13.22307 -13.08543 -12.94387 -12.86148 -12.81574 -12.80711 -12.52479 -12.45765 -12.31989 -12.22909 -12.16719 -12.10299 -11.75994 -11.27265 -11.16668 -10.99905 -10.91958 -10.68858 -10.34321 -10.21596 -10.15494 -9.73427 -5.17365 -0.54349 0.01180 0.61332 1.22583 1.26077 1.48762 1.55381 1.84618 1.93698 2.55691 2.97621 3.09021 3.15761 3.29026 3.37029 3.43102 3.54133 3.71244 3.79861 3.81179 3.85045 3.99112 4.00900 4.02882 4.08337 4.24583 4.37583 4.39814 4.51899 4.57654 4.57824 4.59491 4.64478 4.64617 4.69752 4.75492 4.79616 4.79692 4.81920 4.88534 4.90359 4.94808 5.01251 5.07111 5.09405 5.18655 5.28114 5.38257 5.47642 5.62675 5.84001 6.40818 6.44410 6.48407 7.45850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.649 3.351 7 O -0.567 6.567 8 N -0.711 5.711 9 C 0.151 3.849 10 C -0.128 4.128 11 C -0.131 4.131 12 C 0.047 3.953 13 C -0.128 4.128 14 C 0.012 3.988 15 N -0.385 5.385 16 C 0.175 3.825 17 N -0.493 5.493 18 C 0.049 3.951 19 C -0.224 4.224 20 C -0.038 4.038 21 O -0.545 6.545 22 Si 0.706 3.294 23 S 0.220 5.780 24 C -0.113 4.113 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.406 0.594 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.169 0.831 45 H 0.080 0.920 46 H 0.388 0.612 47 H -0.251 1.251 48 H -0.247 1.247 49 H 0.081 0.919 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 3.055 1.740 3.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.403 3.597 7 O -0.456 6.456 8 N -0.370 5.370 9 C 0.029 3.971 10 C -0.147 4.147 11 C -0.170 4.170 12 C -0.044 4.044 13 C -0.166 4.166 14 C -0.117 4.117 15 N -0.107 5.107 16 C -0.192 4.192 17 N -0.211 5.211 18 C -0.104 4.104 19 C -0.347 4.347 20 C -0.150 4.150 21 O -0.352 6.352 22 Si 0.604 3.396 23 S 0.477 5.523 24 C -0.151 4.151 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.241 0.759 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.186 0.814 45 H 0.098 0.902 46 H 0.236 0.764 47 H -0.175 1.175 48 H -0.171 1.171 49 H 0.099 0.901 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.065 2.412 0.982 2.605 hybrid contribution -0.825 -0.425 0.172 0.944 sum -0.890 1.987 1.154 2.464 Atomic orbital electron populations 1.22524 0.93900 1.05034 1.02684 1.22109 0.94410 0.91562 0.81901 1.21878 1.02341 0.92362 1.03314 1.22521 1.01610 1.03453 0.96539 1.86305 1.71504 1.23475 1.46706 1.18096 0.78846 0.80633 0.82171 1.90919 1.40998 1.70503 1.43174 1.44713 1.55819 1.12612 1.23901 1.21321 1.00036 0.78868 0.96905 1.22882 0.97405 0.96904 0.97478 1.23309 0.95751 0.95061 1.02897 1.23304 0.97033 0.96518 0.87527 1.23068 1.02462 0.94892 0.96175 1.23866 1.04023 0.86441 0.97419 1.66789 1.30120 1.11645 1.02146 1.25576 0.93271 0.98131 1.02189 1.66957 1.01645 1.35758 1.16734 1.21283 1.00185 0.90736 0.98227 1.25498 1.00054 1.00668 1.08432 1.24081 1.03363 1.00202 0.87314 1.86505 1.48354 1.69418 1.30972 0.95002 0.76241 0.83877 0.84452 1.84062 1.12371 1.15188 1.40705 1.22998 0.96259 0.96206 0.99591 0.92149 0.90929 0.89453 0.91384 0.89946 0.91407 0.89443 0.90943 0.92109 0.75919 0.90580 0.91013 0.88824 0.87980 0.89314 0.88061 0.89335 0.88852 0.88251 0.81444 0.90217 0.76394 1.17519 1.17126 0.90061 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.31 8.37 37.16 0.31 0.00 16 2 C 0.14 0.23 1.13 -90.62 -0.10 0.13 16 3 C -0.14 0.06 8.85 37.16 0.33 0.39 16 4 C -0.18 -0.30 8.37 37.16 0.31 0.01 16 5 O -0.37 -1.04 9.94 -40.32 -0.40 -1.44 16 6 C 0.65 2.16 8.06 54.05 0.44 2.60 16 7 O -0.57 -3.21 11.88 -19.28 -0.23 -3.44 16 8 N -0.71 -0.40 5.56 -65.28 -0.36 -0.77 16 9 C 0.15 -0.03 5.51 -4.04 -0.02 -0.05 16 10 C -0.13 0.13 3.51 -89.66 -0.31 -0.18 16 11 C -0.13 0.04 6.78 -26.22 -0.18 -0.13 16 12 C 0.05 -0.01 1.21 -137.40 -0.17 -0.18 16 13 C -0.13 0.15 8.22 -26.45 -0.22 -0.07 16 14 C 0.01 0.01 7.61 -8.78 -0.07 -0.06 16 15 N -0.38 -0.59 6.53 -173.08 -1.13 -1.72 16 16 C 0.17 0.44 5.16 -87.68 -0.45 -0.02 16 17 N -0.49 -1.62 7.28 -15.20 -0.11 -1.73 16 18 C 0.05 0.14 10.07 -19.14 -0.19 -0.06 16 19 C -0.22 -0.43 5.96 -36.02 -0.21 -0.65 16 20 C -0.04 0.03 3.07 36.00 0.11 0.14 16 21 O -0.55 0.29 12.86 -35.23 -0.45 -0.16 16 22 Si 0.71 -1.39 30.49 -169.99 -5.18 -6.58 16 23 S 0.22 0.40 22.92 -107.50 -2.46 -2.06 16 24 C -0.11 0.15 7.51 -26.22 -0.20 -0.04 16 25 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 26 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 27 H 0.09 0.34 5.88 -51.93 -0.31 0.03 16 28 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 30 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.09 0.33 5.88 -51.93 -0.31 0.03 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.41 -0.48 8.58 -40.82 -0.35 -0.83 16 35 H 0.08 0.01 7.85 -51.93 -0.41 -0.40 16 36 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.09 -0.04 7.71 -51.93 -0.40 -0.44 16 38 H 0.10 -0.13 8.10 -51.93 -0.42 -0.56 16 39 H 0.09 0.14 5.64 -51.93 -0.29 -0.15 16 40 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 41 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 42 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 43 H 0.10 0.16 6.86 -51.93 -0.36 -0.19 16 44 H 0.17 0.30 5.85 -52.49 -0.31 -0.01 16 45 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 46 H 0.39 -2.24 8.74 45.56 0.40 -1.84 16 47 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 48 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 49 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 50 H 0.10 -0.22 7.90 -51.93 -0.41 -0.63 16 LS Contribution 405.71 15.07 6.11 6.11 Total: 0.00 -7.97 405.71 -12.69 -20.65 By element: Atomic # 1 Polarization: -2.85 SS G_CDS: -7.84 Total: -10.69 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.63 Total: 1.83 kcal Atomic # 7 Polarization: -2.62 SS G_CDS: -1.60 Total: -4.22 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -1.08 Total: -5.05 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: -5.18 Total: -6.58 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.46 Total: -2.06 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -7.97 -12.69 -20.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310064_15704118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.903 kcal (2) G-P(sol) polarization free energy of solvation -7.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds