Wall clock time and date at job start Mon Mar 8 2021 08:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.53001 * 109.47090 * 240.00203 * 2 1 3 5 5 O 1.45200 * 109.47240 * 119.99780 * 2 1 3 6 6 C 1.34637 * 116.99859 * 59.99723 * 5 2 1 7 7 O 1.21508 * 119.99977 * 0.02562 * 6 5 2 8 8 N 1.34771 * 120.00087 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00202 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47086 * 180.02562 * 9 8 6 11 11 C 1.53920 * 113.58567 * 175.00192 * 10 9 8 12 12 C 1.53069 * 86.84102 * 139.52694 * 11 10 9 13 13 C 1.52884 * 120.88091 * 209.72942 * 12 11 10 14 14 C 1.53653 * 83.28647 * 259.45339 * 13 12 11 15 15 N 1.46697 * 120.99030 * 100.36021 * 12 11 10 16 16 C 1.38609 * 111.00042 * 347.91468 * 15 12 11 17 17 N 1.29693 * 124.94677 * 72.68913 * 16 15 12 18 18 C 1.32123 * 116.86378 * 179.97438 * 17 16 15 19 19 C 1.33327 * 114.58222 * 359.97438 * 18 17 16 20 20 C 1.50698 * 125.95134 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47046 * 119.97400 * 20 19 18 22 22 Si 1.86302 * 109.47363 * 359.97438 * 20 19 18 23 23 S 1.70968 * 124.95328 * 252.38163 * 16 15 12 24 24 C 1.53063 * 87.86380 * 335.00223 * 12 11 10 25 25 H 1.09003 * 109.47590 * 299.99806 * 1 2 3 26 26 H 1.09000 * 109.47298 * 60.00234 * 1 2 3 27 27 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47195 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46910 * 300.00003 * 3 2 1 30 30 H 1.08999 * 109.47280 * 59.99710 * 3 2 1 31 31 H 1.09000 * 109.46760 * 299.99779 * 4 2 1 32 32 H 1.09000 * 109.47407 * 59.99630 * 4 2 1 33 33 H 1.08993 * 109.47054 * 180.02562 * 4 2 1 34 34 H 0.97009 * 119.99828 * 0.02562 * 8 6 5 35 35 H 1.08995 * 109.46994 * 60.00515 * 9 8 6 36 36 H 1.09003 * 109.46931 * 300.00322 * 9 8 6 37 37 H 1.08997 * 112.83002 * 43.88276 * 10 9 8 38 38 H 1.08998 * 113.65095 * 25.04122 * 11 10 9 39 39 H 1.08993 * 113.64953 * 254.01542 * 11 10 9 40 40 H 1.09000 * 114.21259 * 145.88962 * 13 12 11 41 41 H 1.08997 * 114.24210 * 13.01765 * 13 12 11 42 42 H 1.09002 * 113.43794 * 219.85684 * 14 13 12 43 43 H 1.08998 * 113.43828 * 89.55157 * 14 13 12 44 44 H 1.08001 * 122.70516 * 179.97438 * 18 17 16 45 45 H 1.08998 * 109.47199 * 239.97442 * 20 19 18 46 46 H 0.96700 * 114.00026 * 179.97438 * 21 20 19 47 47 H 1.48497 * 109.99621 * 298.68157 * 22 20 19 48 48 H 1.48497 * 110.00000 * 59.99686 * 22 20 19 49 49 H 1.08996 * 113.65454 * 139.48502 * 24 12 11 50 50 H 1.09001 * 113.64829 * 270.50876 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9515 -2.5096 0.5037 8 7 2.0680 -2.6656 2.4167 9 6 1.6748 -4.0671 2.5827 10 6 2.2748 -4.6150 3.8792 11 6 1.8211 -6.0480 4.2104 12 6 3.2636 -6.3129 4.6484 13 6 3.8754 -7.7091 4.5315 14 6 3.5634 -7.7750 6.0346 15 7 3.6365 -6.3009 6.0672 16 6 2.6186 -5.7701 6.8438 17 7 1.5000 -6.3688 7.1128 18 6 0.6397 -5.7137 7.8720 19 6 1.0510 -4.5070 8.2621 20 6 0.2784 -3.5464 9.1289 21 8 1.0227 -3.2734 10.3179 22 14 -1.3627 -4.3020 9.5834 23 16 2.6575 -4.2337 7.5930 24 6 3.6954 -5.1831 3.7104 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7216 -1.2490 34 1 2.6277 -2.2367 3.0829 35 1 2.0413 -4.6498 1.7377 36 1 0.5879 -4.1365 2.6280 37 1 2.1785 -3.9226 4.7155 38 1 1.5169 -6.6234 3.3361 39 1 1.0998 -6.1007 5.0258 40 1 4.9395 -7.7126 4.2953 41 1 3.2945 -8.4028 3.9237 42 1 4.3450 -8.2608 6.6187 43 1 2.5695 -8.1648 6.2544 44 1 -0.3193 -6.1228 8.1537 45 1 0.1121 -2.6177 8.5831 46 1 0.5847 -2.6604 10.9240 47 1 -2.1593 -4.5613 8.3573 48 1 -1.1497 -5.5690 10.3280 49 1 4.4743 -4.5435 4.1256 50 1 3.9154 -5.5167 2.6963 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17310064_15704118.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:07 Heat of formation + Delta-G solvation = 16.851393 kcal Electronic energy + Delta-G solvation = -32046.020281 eV Core-core repulsion = 27783.800197 eV Total energy + Delta-G solvation = -4262.220083 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.160 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.08050 -41.82809 -40.49549 -38.81141 -37.89025 -37.43761 -35.57237 -34.64347 -32.94527 -30.41819 -28.89427 -28.39564 -28.32236 -27.05559 -26.33027 -24.92199 -24.57442 -23.20577 -22.00553 -21.52515 -20.86138 -19.64260 -19.17145 -19.15348 -18.46899 -17.83342 -17.49889 -17.40652 -17.26994 -16.47320 -16.34635 -16.21974 -15.72410 -15.63335 -15.56341 -15.21014 -15.14898 -14.71240 -14.50322 -14.28775 -14.02313 -13.82098 -13.52440 -13.38304 -13.24707 -13.13096 -12.94880 -12.93385 -12.89244 -12.84453 -12.59822 -12.53944 -12.39934 -12.34021 -12.19540 -12.08888 -11.77972 -11.42653 -11.23584 -11.07591 -11.05686 -10.72098 -10.40234 -10.29800 -10.24713 -9.83920 -5.05846 -0.66837 -0.08282 0.49361 1.11237 1.31450 1.38109 1.60874 1.70645 1.92627 2.51758 2.95149 3.04740 3.25018 3.31470 3.36990 3.42939 3.55476 3.71752 3.73451 3.76937 3.82984 3.91908 4.00185 4.05654 4.08616 4.25101 4.31931 4.39976 4.46449 4.55143 4.55975 4.58729 4.64608 4.68129 4.69576 4.73858 4.74747 4.79492 4.84654 4.85254 4.87783 4.94575 4.98618 5.04824 5.12223 5.18997 5.24407 5.28567 5.33033 5.53929 5.78467 6.32332 6.33183 6.79921 7.27928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.644 3.356 7 O -0.594 6.594 8 N -0.700 5.700 9 C 0.157 3.843 10 C -0.116 4.116 11 C -0.131 4.131 12 C 0.044 3.956 13 C -0.116 4.116 14 C 0.007 3.993 15 N -0.395 5.395 16 C 0.169 3.831 17 N -0.508 5.508 18 C 0.028 3.972 19 C -0.230 4.230 20 C -0.048 4.048 21 O -0.564 6.564 22 Si 0.803 3.197 23 S 0.224 5.776 24 C -0.104 4.104 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.415 0.585 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.169 0.831 45 H 0.103 0.897 46 H 0.410 0.590 47 H -0.284 1.284 48 H -0.296 1.296 49 H 0.081 0.919 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 4.318 1.472 4.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.360 5.360 9 C 0.034 3.966 10 C -0.135 4.135 11 C -0.170 4.170 12 C -0.047 4.047 13 C -0.153 4.153 14 C -0.123 4.123 15 N -0.117 5.117 16 C -0.197 4.197 17 N -0.227 5.227 18 C -0.125 4.125 19 C -0.352 4.352 20 C -0.159 4.159 21 O -0.375 6.375 22 Si 0.706 3.294 23 S 0.481 5.519 24 C -0.142 4.142 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.185 0.815 45 H 0.121 0.879 46 H 0.262 0.738 47 H -0.211 1.211 48 H -0.224 1.224 49 H 0.100 0.900 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.542 3.717 0.746 3.830 hybrid contribution -1.021 -0.856 0.282 1.362 sum -0.479 2.861 1.028 3.077 Atomic orbital electron populations 1.22481 0.94112 1.03647 1.03552 1.22364 0.94423 0.92626 0.81514 1.21894 1.02493 0.90810 1.04268 1.22475 1.01690 1.02237 0.97333 1.86313 1.71525 1.23206 1.47321 1.18316 0.78736 0.80832 0.82423 1.90909 1.42281 1.71048 1.44296 1.44709 1.55268 1.12711 1.23298 1.21288 0.99422 0.78514 0.97331 1.22751 0.97715 0.96387 0.96680 1.23307 0.95418 0.95656 1.02627 1.23378 0.97076 0.97512 0.86731 1.23075 1.03159 0.94331 0.94782 1.23872 1.03343 0.86061 0.98997 1.66846 1.29898 1.12009 1.02996 1.25738 0.93253 0.98416 1.02316 1.66942 1.02123 1.36391 1.17215 1.21414 1.00542 0.91424 0.99103 1.25928 1.00192 1.00814 1.08252 1.24330 1.03182 1.00890 0.87462 1.86450 1.49212 1.70431 1.31391 0.94045 0.73596 0.80903 0.80844 1.83945 1.12508 1.14931 1.40549 1.22997 0.95713 0.95570 0.99936 0.91945 0.89381 0.91885 0.91132 0.88278 0.91168 0.91811 0.89428 0.91859 0.74811 0.90472 0.92123 0.89332 0.86935 0.91236 0.87035 0.88215 0.88685 0.89647 0.81451 0.87910 0.73784 1.21065 1.22376 0.90032 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 8.37 71.98 0.60 -0.05 16 2 C 0.13 0.41 1.13 -10.79 -0.01 0.40 16 3 C -0.14 0.27 8.85 71.98 0.64 0.90 16 4 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 5 O -0.37 -2.21 9.94 -55.47 -0.55 -2.76 16 6 C 0.64 4.76 8.06 129.79 1.05 5.81 16 7 O -0.59 -7.56 11.88 19.82 0.24 -7.32 16 8 N -0.70 -1.04 5.56 -590.86 -3.29 -4.33 16 9 C 0.16 0.02 5.51 86.38 0.48 0.50 16 10 C -0.12 0.21 3.51 -10.17 -0.04 0.18 16 11 C -0.13 0.01 6.78 30.93 0.21 0.22 16 12 C 0.04 -0.02 1.21 -0.12 0.00 -0.02 16 13 C -0.12 0.32 8.22 30.78 0.25 0.57 16 14 C 0.01 0.01 7.61 82.70 0.63 0.64 16 15 N -0.40 -1.44 6.53 -701.50 -4.58 -6.02 16 16 C 0.17 1.03 5.16 179.32 0.92 1.95 16 17 N -0.51 -4.20 7.28 -202.02 -1.47 -5.67 16 18 C 0.03 0.20 10.07 83.54 0.84 1.04 16 19 C -0.23 -1.06 5.96 24.57 0.15 -0.92 16 20 C -0.05 0.09 3.07 71.24 0.22 0.30 16 21 O -0.56 0.95 12.86 -148.98 -1.92 -0.97 16 22 Si 0.80 -2.87 30.49 68.60 2.09 -0.77 16 23 S 0.22 0.96 22.92 -56.49 -1.29 -0.34 16 24 C -0.10 0.34 7.51 30.93 0.23 0.57 16 25 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 28 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 32 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.42 -1.00 8.58 -92.70 -0.80 -1.80 16 35 H 0.08 0.03 7.85 -2.39 -0.02 0.01 16 36 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.09 -0.04 7.71 -2.39 -0.02 -0.06 16 38 H 0.11 -0.28 8.10 -2.39 -0.02 -0.30 16 39 H 0.07 0.32 5.64 -2.39 -0.01 0.31 16 40 H 0.11 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 42 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.09 0.41 6.86 -2.39 -0.02 0.39 16 44 H 0.17 0.97 5.85 -2.91 -0.02 0.95 16 45 H 0.10 -0.65 7.96 -2.39 -0.02 -0.67 16 46 H 0.41 -5.23 8.74 -74.06 -0.65 -5.87 16 47 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 48 H -0.30 -1.33 7.11 99.48 0.71 -0.62 16 49 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.11 -0.63 7.90 -2.39 -0.02 -0.65 16 Total: 0.00 -20.32 405.71 -4.43 -24.75 By element: Atomic # 1 Polarization: -8.23 SS G_CDS: -0.43 Total: -8.66 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.77 Total: 12.08 kcal Atomic # 7 Polarization: -6.67 SS G_CDS: -9.34 Total: -16.01 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -2.23 Total: -11.05 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: 2.09 Total: -0.77 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.29 Total: -0.34 kcal Total: -20.32 -4.43 -24.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310064_15704118.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.603 kcal (2) G-P(sol) polarization free energy of solvation -20.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds