Wall clock time and date at job start Mon Mar 8 2021 08:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33329 * 125.95331 * 2 1 4 4 C 1.50704 * 122.70500 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.47200 * 330.00042 * 4 3 2 6 6 Si 1.86303 * 109.46814 * 210.00314 * 4 3 2 7 7 N 1.32119 * 114.58158 * 179.75267 * 3 2 1 8 8 C 1.29683 * 116.86612 * 0.46634 * 7 3 2 9 9 N 1.38609 * 124.94923 * 179.81554 * 8 7 3 10 10 C 1.48173 * 110.99939 * 23.60106 * 9 8 7 11 11 C 1.54120 * 86.53359 * 223.42334 * 10 9 8 12 12 C 1.47131 * 111.06801 * 284.73432 * 9 8 7 13 13 C 1.52797 * 121.40421 * 262.18446 * 12 9 8 14 14 C 1.53977 * 86.74685 * 101.23132 * 13 12 9 15 15 C 1.52999 * 113.64458 * 139.26802 * 14 13 12 16 16 N 1.46500 * 109.47244 * 87.22437 * 15 14 13 17 17 C 1.34777 * 120.00177 * 179.97438 * 16 15 14 18 18 O 1.21511 * 119.99804 * 0.02562 * 17 16 15 19 19 O 1.34633 * 119.99994 * 179.97438 * 17 16 15 20 20 C 1.45201 * 117.00024 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46857 * 60.00505 * 20 19 17 22 22 C 1.53000 * 109.47303 * 179.97438 * 20 19 17 23 23 C 1.52994 * 109.47230 * 300.00376 * 20 19 17 24 24 C 1.52804 * 121.26080 * 11.24880 * 12 9 8 25 25 S 1.70970 * 110.10014 * 359.55360 * 8 7 3 26 26 H 1.09005 * 109.46756 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47479 * 299.97532 * 1 2 3 28 28 H 1.08999 * 109.47139 * 59.98108 * 1 2 3 29 29 H 1.08994 * 109.47123 * 90.00171 * 4 3 2 30 30 H 0.96697 * 113.99862 * 180.02562 * 5 4 3 31 31 H 1.48494 * 110.00084 * 59.99823 * 6 4 3 32 32 H 1.48500 * 109.99965 * 181.32146 * 6 4 3 33 33 H 1.09003 * 113.71807 * 108.98942 * 10 9 8 34 34 H 1.08998 * 113.71864 * 337.85640 * 10 9 8 35 35 H 1.08999 * 113.79489 * 137.16433 * 11 10 9 36 36 H 1.09002 * 113.79301 * 268.51768 * 11 10 9 37 37 H 1.09002 * 113.66829 * 215.69148 * 13 12 9 38 38 H 1.08998 * 113.67121 * 346.76458 * 13 12 9 39 39 H 1.09000 * 113.57190 * 270.03656 * 14 13 12 40 40 H 1.09006 * 109.46856 * 207.22111 * 15 14 13 41 41 H 1.09002 * 109.47610 * 327.22081 * 15 14 13 42 42 H 0.97005 * 119.99437 * 359.97438 * 16 15 14 43 43 H 1.08996 * 109.47299 * 59.99704 * 21 20 19 44 44 H 1.08997 * 109.47221 * 179.97438 * 21 20 19 45 45 H 1.09001 * 109.47122 * 299.99772 * 21 20 19 46 46 H 1.09003 * 109.47006 * 59.99886 * 22 20 19 47 47 H 1.08997 * 109.47291 * 180.02562 * 22 20 19 48 48 H 1.09004 * 109.46972 * 300.00765 * 22 20 19 49 49 H 1.09001 * 109.47150 * 59.99983 * 23 20 19 50 50 H 1.09005 * 109.47158 * 179.97438 * 23 20 19 51 51 H 1.09003 * 109.47105 * 299.99547 * 23 20 19 52 52 H 1.08997 * 113.66649 * 13.11341 * 24 12 9 53 53 H 1.09006 * 113.66463 * 144.18847 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4814 2.5019 -0.6747 6 14 2.9325 3.6147 -0.8788 7 7 3.5850 0.8188 0.0052 8 6 3.9315 -0.4309 0.0001 9 7 5.2385 -0.8925 0.0006 10 6 6.1602 0.1233 0.5610 11 6 7.1069 -0.2295 -0.6029 12 6 5.8561 -0.7333 -1.3252 13 6 5.9254 -1.8945 -2.3159 14 6 4.7266 -1.2426 -3.0291 15 6 4.8240 -1.2840 -4.5555 16 7 4.2588 -2.5431 -5.0469 17 6 4.2364 -2.8009 -6.3696 18 8 4.6854 -1.9892 -7.1545 19 8 3.7174 -3.9582 -6.8212 20 6 3.7258 -4.1683 -8.2579 21 6 5.1675 -4.1370 -8.7693 22 6 3.1010 -5.5277 -8.5782 23 6 2.9186 -3.0619 -8.9398 24 6 5.1836 0.0951 -2.4190 25 16 2.5413 -1.4261 0.0001 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5134 0.8901 28 1 -0.3633 0.5141 -0.8898 29 1 1.6088 2.8217 1.0269 30 1 0.0693 3.3757 -0.7135 31 1 3.1218 3.1635 -2.2808 32 1 2.4184 5.0077 -0.8584 33 1 6.5558 -0.1376 1.5426 34 1 5.7710 1.1405 0.5167 35 1 7.5671 0.6389 -1.0742 36 1 7.8247 -1.0141 -0.3635 37 1 6.8368 -1.9060 -2.9137 38 1 5.6963 -2.8631 -1.8715 39 1 3.7602 -1.5837 -2.6578 40 1 4.2681 -0.4468 -4.9779 41 1 5.8697 -1.2138 -4.8549 42 1 3.9007 -3.1912 -4.4202 43 1 5.7426 -4.9252 -8.2835 44 1 5.1740 -4.2952 -9.8477 45 1 5.6131 -3.1688 -8.5411 46 1 2.0740 -5.5505 -8.2137 47 1 3.1078 -5.6856 -9.6567 48 1 3.6765 -6.3156 -8.0923 49 1 3.3642 -2.0937 -8.7116 50 1 2.9253 -3.2194 -10.0184 51 1 1.8915 -3.0842 -8.5755 52 1 4.3628 0.7140 -2.0567 53 1 5.8860 0.6448 -3.0458 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17310064_15704122.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:11 Heat of formation + Delta-G solvation = 11.279345 kcal Electronic energy + Delta-G solvation = -34588.081628 eV Core-core repulsion = 30170.082304 eV Total energy + Delta-G solvation = -4417.999325 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.176 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.83374 -41.83510 -40.66053 -38.81217 -37.85634 -37.32120 -35.57794 -34.65872 -33.55897 -30.93959 -28.93017 -28.78849 -28.41064 -28.33458 -26.94626 -25.77573 -24.76111 -24.05198 -23.20000 -21.88223 -20.98269 -20.51395 -19.58598 -19.18079 -19.00866 -18.20033 -17.80912 -17.42064 -17.39546 -17.20297 -16.42362 -16.26647 -16.08390 -15.86087 -15.64297 -15.56753 -15.17759 -14.81880 -14.53174 -14.38684 -14.24545 -13.90746 -13.88689 -13.80017 -13.57759 -13.39450 -13.29436 -13.20709 -13.15816 -12.95913 -12.91883 -12.89913 -12.71552 -12.54336 -12.47676 -12.37488 -12.21304 -11.97147 -11.80086 -11.64031 -11.43941 -11.24729 -11.06529 -10.94200 -10.74068 -10.32948 -10.27234 -10.12114 -9.37993 -4.87280 -0.42319 0.11901 0.65980 1.10549 1.13858 1.55722 1.63467 1.69521 1.90654 2.49885 2.82402 3.05135 3.28042 3.46231 3.47947 3.56864 3.70461 3.72939 3.75569 3.90467 3.90609 3.91117 4.08987 4.14600 4.18680 4.31218 4.37903 4.45017 4.48784 4.56966 4.57472 4.63617 4.68929 4.71684 4.72357 4.72677 4.75376 4.79015 4.83100 4.83822 4.86669 4.93654 4.99259 5.02633 5.03528 5.08535 5.18442 5.21138 5.22956 5.26979 5.30415 5.37515 5.53001 5.92914 6.31747 6.49129 6.55659 7.27011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.211 4.211 3 C 0.053 3.947 4 C -0.039 4.039 5 O -0.546 6.546 6 Si 0.766 3.234 7 N -0.488 5.488 8 C 0.180 3.820 9 N -0.401 5.401 10 C 0.014 3.986 11 C -0.120 4.120 12 C 0.052 3.948 13 C -0.102 4.102 14 C -0.119 4.119 15 C 0.156 3.844 16 N -0.699 5.699 17 C 0.643 3.357 18 O -0.595 6.595 19 O -0.369 6.369 20 C 0.127 3.873 21 C -0.180 4.180 22 C -0.137 4.137 23 C -0.181 4.181 24 C -0.132 4.132 25 S 0.171 5.829 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.399 0.601 31 H -0.310 1.310 32 H -0.277 1.277 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.416 0.584 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.060 0.940 52 H 0.065 0.935 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -0.886 3.127 3.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.332 4.332 3 C -0.078 4.078 4 C -0.151 4.151 5 O -0.356 6.356 6 Si 0.671 3.329 7 N -0.209 5.209 8 C -0.187 4.187 9 N -0.124 5.124 10 C -0.115 4.115 11 C -0.158 4.158 12 C -0.039 4.039 13 C -0.140 4.140 14 C -0.138 4.138 15 C 0.033 3.967 16 N -0.359 5.359 17 C 0.396 3.604 18 O -0.486 6.486 19 O -0.284 6.284 20 C 0.090 3.910 21 C -0.237 4.237 22 C -0.194 4.194 23 C -0.238 4.238 24 C -0.171 4.171 25 S 0.427 5.573 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.250 0.750 31 H -0.238 1.238 32 H -0.204 1.204 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.252 0.748 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.107 0.893 51 H 0.079 0.921 52 H 0.084 0.916 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.392 -1.979 2.293 3.333 hybrid contribution -1.860 1.696 -0.184 2.524 sum -0.468 -0.283 2.108 2.178 Atomic orbital electron populations 1.20216 0.85405 1.02389 1.04128 1.25894 1.02813 0.94200 1.10329 1.19258 0.87429 0.96145 1.04985 1.24001 0.92110 0.96505 1.02485 1.86496 1.32946 1.36742 1.79389 0.93264 0.86552 0.73972 0.79065 1.66252 1.17018 1.19023 1.18564 1.25302 0.99356 0.90147 1.03894 1.66435 0.95051 1.39623 1.11256 1.24105 0.91400 0.95642 1.00382 1.23202 0.95432 1.02538 0.94612 1.23230 0.94674 0.98060 0.87952 1.22913 0.98201 0.97488 0.95348 1.22797 1.00084 0.98373 0.92531 1.21305 0.98962 0.83522 0.92863 1.44716 1.64939 1.22642 1.03641 1.18328 0.77235 0.80703 0.84084 1.90906 1.52583 1.49389 1.55711 1.86312 1.75943 1.37253 1.28864 1.22366 0.96953 0.97531 0.74102 1.22473 0.94994 1.03262 1.02963 1.21893 1.01361 0.92617 1.03574 1.22483 0.99867 0.99269 1.02200 1.23244 1.01046 0.96003 0.96786 1.83964 0.96069 1.09456 1.67791 0.91301 0.89912 0.89551 0.88226 0.74966 1.23768 1.20375 0.87971 0.88434 0.88521 0.87500 0.86900 0.89977 0.89381 0.92702 0.90345 0.74800 0.91769 0.89405 0.91811 0.91276 0.88233 0.91045 0.91943 0.89318 0.92088 0.91616 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.05 8.91 71.24 0.63 0.58 16 2 C -0.21 -0.83 6.50 24.57 0.16 -0.67 16 3 C 0.05 0.23 5.95 41.41 0.25 0.48 16 4 C -0.04 -0.02 2.93 71.24 0.21 0.19 16 5 O -0.55 0.05 9.80 -148.98 -1.46 -1.41 16 6 Si 0.77 1.16 32.09 68.60 2.20 3.36 16 7 N -0.49 -1.98 5.92 -189.86 -1.12 -3.10 16 8 C 0.18 0.60 5.22 179.32 0.94 1.53 16 9 N -0.40 -0.37 6.38 -669.86 -4.27 -4.64 16 10 C 0.01 -0.03 7.88 86.33 0.68 0.65 16 11 C -0.12 0.60 8.05 30.97 0.25 0.84 16 12 C 0.05 -0.10 1.35 3.23 0.00 -0.10 16 13 C -0.10 0.37 7.53 30.86 0.23 0.60 16 14 C -0.12 0.14 3.56 -10.14 -0.04 0.11 16 15 C 0.16 0.22 5.51 86.38 0.48 0.69 16 16 N -0.70 -1.89 5.56 -590.85 -3.29 -5.18 16 17 C 0.64 5.51 8.06 129.79 1.05 6.56 16 18 O -0.59 -8.25 11.88 19.80 0.24 -8.02 16 19 O -0.37 -2.59 9.94 -55.42 -0.55 -3.14 16 20 C 0.13 0.53 1.13 -10.79 -0.01 0.51 16 21 C -0.18 -0.73 8.37 71.98 0.60 -0.13 16 22 C -0.14 0.16 8.85 71.98 0.64 0.80 16 23 C -0.18 -0.86 8.37 71.98 0.60 -0.26 16 24 C -0.13 0.02 6.82 30.86 0.21 0.23 16 25 S 0.17 0.47 22.89 -56.49 -1.29 -0.83 16 26 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 27 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.09 0.19 6.73 -2.39 -0.02 0.17 16 29 H 0.10 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.40 -3.16 8.74 -74.06 -0.65 -3.81 16 31 H -0.31 -3.18 7.11 99.48 0.71 -2.48 16 32 H -0.28 -1.03 7.11 99.48 0.71 -0.33 16 33 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.10 -0.10 6.88 -2.39 -0.02 -0.11 16 35 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.11 -0.65 7.90 -2.39 -0.02 -0.67 16 38 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.09 0.05 7.82 -2.39 -0.02 0.03 16 40 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.08 0.09 7.85 -2.39 -0.02 0.08 16 42 H 0.42 -0.53 8.58 -92.70 -0.80 -1.32 16 43 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 45 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 46 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 48 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 49 H 0.06 0.64 5.88 -2.39 -0.01 0.63 16 50 H 0.09 0.09 8.14 -2.38 -0.02 0.07 16 51 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 52 H 0.07 0.30 5.81 -2.39 -0.01 0.29 16 53 H 0.11 -0.25 8.10 -2.38 -0.02 -0.27 16 Total: 0.00 -16.85 425.79 -3.14 -19.99 By element: Atomic # 1 Polarization: -9.19 SS G_CDS: -0.47 Total: -9.66 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.88 Total: 12.62 kcal Atomic # 7 Polarization: -4.24 SS G_CDS: -8.68 Total: -12.92 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.78 Total: -12.57 kcal Atomic # 14 Polarization: 1.16 SS G_CDS: 2.20 Total: 3.36 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.29 Total: -0.83 kcal Total: -16.85 -3.14 -19.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310064_15704122.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.271 kcal (2) G-P(sol) polarization free energy of solvation -16.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds