Wall clock time and date at job start Mon Mar 8 2021 08:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47025 * 2 1 4 4 C 1.53002 * 109.47224 * 240.00094 * 2 1 3 5 5 O 1.45200 * 109.47055 * 120.00027 * 2 1 3 6 6 C 1.34634 * 116.99802 * 60.00322 * 5 2 1 7 7 O 1.21510 * 120.00505 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00168 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00306 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.47021 * 179.97438 * 9 8 6 11 11 C 1.53968 * 113.57776 * 274.25664 * 10 9 8 12 12 C 1.52961 * 86.68795 * 220.76831 * 11 10 9 13 13 C 1.52961 * 121.21511 * 258.73305 * 12 11 10 14 14 C 1.54123 * 85.97109 * 257.60243 * 13 12 11 15 15 N 1.46910 * 121.39399 * 150.96938 * 12 11 10 16 16 C 1.39142 * 110.99824 * 348.57841 * 15 12 11 17 17 N 1.32344 * 119.71588 * 68.32565 * 16 15 12 18 18 C 1.32002 * 121.64548 * 179.97438 * 17 16 15 19 19 C 1.37981 * 120.90651 * 359.97438 * 18 17 16 20 20 C 1.50693 * 120.33228 * 179.97438 * 19 18 17 21 21 O 1.42904 * 109.47429 * 119.99892 * 20 19 18 22 22 Si 1.86302 * 109.47019 * 0.02562 * 20 19 18 23 23 C 1.38916 * 119.34391 * 359.97438 * 19 18 17 24 24 C 1.38448 * 118.48269 * 359.74565 * 23 19 18 25 25 F 1.35095 * 120.46795 * 180.26975 * 24 23 19 26 26 C 1.52801 * 88.18605 * 24.77037 * 12 11 10 27 27 H 1.09000 * 109.46965 * 299.99921 * 1 2 3 28 28 H 1.08999 * 109.47596 * 59.99905 * 1 2 3 29 29 H 1.08998 * 109.47469 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46416 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47085 * 299.99901 * 3 2 1 32 32 H 1.08993 * 109.47403 * 60.00500 * 3 2 1 33 33 H 1.09001 * 109.46887 * 300.00596 * 4 2 1 34 34 H 1.08999 * 109.46833 * 59.99534 * 4 2 1 35 35 H 1.08994 * 109.47293 * 179.97438 * 4 2 1 36 36 H 0.97009 * 119.99429 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47194 * 299.99441 * 9 8 6 38 38 H 1.09003 * 109.47121 * 59.99978 * 9 8 6 39 39 H 1.08996 * 112.81685 * 45.33581 * 10 9 8 40 40 H 1.09001 * 113.66833 * 335.20277 * 11 10 9 41 41 H 1.08998 * 113.66806 * 106.27896 * 11 10 9 42 42 H 1.08992 * 113.79645 * 11.86825 * 13 12 11 43 43 H 1.09008 * 113.79190 * 143.22187 * 13 12 11 44 44 H 1.08992 * 113.71941 * 91.43655 * 14 13 12 45 45 H 1.09001 * 113.72088 * 222.57356 * 14 13 12 46 46 H 1.08008 * 119.55009 * 180.02562 * 18 17 16 47 47 H 1.09000 * 109.47591 * 240.00019 * 20 19 18 48 48 H 0.96704 * 113.99618 * 300.00911 * 21 20 19 49 49 H 1.48504 * 109.99927 * 179.97438 * 22 20 19 50 50 H 1.48503 * 109.99743 * 301.31412 * 22 20 19 51 51 H 1.08000 * 120.75541 * 180.02562 * 23 19 18 52 52 H 1.08996 * 113.67057 * 220.76295 * 26 12 11 53 53 H 1.09006 * 113.67043 * 89.69527 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0671 -2.6655 2.4171 9 6 1.6731 -4.0666 2.5835 10 6 2.2733 -4.6147 3.8799 11 6 3.7080 -5.1489 3.7166 12 6 3.2892 -6.2993 4.6336 13 6 3.6764 -6.3149 6.1133 14 6 4.7593 -7.3336 5.7072 15 7 3.9103 -7.6266 4.5288 16 6 4.6787 -7.7277 3.3732 17 7 5.7912 -7.0197 3.2612 18 6 6.5491 -7.0867 2.1825 19 6 6.2061 -7.9040 1.1250 20 6 7.0804 -7.9701 -0.1005 21 8 7.5400 -9.3104 -0.2862 22 14 8.5434 -6.8375 0.1186 23 6 5.0467 -8.6654 1.2013 24 6 4.2745 -8.5794 2.3472 25 9 3.1420 -9.3063 2.4662 26 6 1.8455 -6.0600 4.1937 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7208 -1.2495 36 1 2.6267 -2.2365 3.0833 37 1 0.5862 -4.1355 2.6284 38 1 2.0396 -4.6500 1.7388 39 1 2.1552 -3.9326 4.7218 40 1 3.9448 -5.4636 2.7002 41 1 4.4689 -4.4988 4.1485 42 1 4.0770 -5.3673 6.4730 43 1 2.9056 -6.7261 6.7653 44 1 5.7171 -6.8784 5.4553 45 1 4.8557 -8.1704 6.3991 46 1 7.4505 -6.4943 2.1271 47 1 6.5068 -7.6585 -0.9735 48 1 8.0591 -9.6543 0.4537 49 1 9.4139 -6.8941 -1.0832 50 1 8.0785 -5.4454 0.3445 51 1 4.7567 -9.3131 0.3871 52 1 1.1224 -6.1359 5.0056 53 1 1.5562 -6.6320 3.3120 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17310064_17656566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:51:15 Heat of formation + Delta-G solvation = -38.830842 kcal Electronic energy + Delta-G solvation = -36582.805026 eV Core-core repulsion = 31759.564158 eV Total energy + Delta-G solvation = -4823.240868 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.194 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -50.05657 -42.89215 -41.86287 -40.89995 -38.85598 -38.01574 -37.36996 -35.62144 -34.70385 -33.71385 -32.76267 -29.72606 -28.89864 -28.43535 -28.35223 -27.02306 -26.18657 -25.13114 -24.65761 -23.17243 -23.05007 -21.93773 -20.96463 -19.67344 -19.20988 -19.17356 -18.40777 -18.14083 -17.76164 -17.62204 -17.40488 -17.31298 -16.72339 -16.47938 -16.26673 -16.13479 -16.01712 -15.63947 -15.51558 -15.47819 -15.13548 -14.61385 -14.52022 -14.40694 -14.29966 -14.19282 -13.77935 -13.52879 -13.42201 -13.25554 -13.10170 -12.97868 -12.92590 -12.85265 -12.75448 -12.68795 -12.52802 -12.41381 -12.27255 -12.18988 -11.97868 -11.65490 -11.46200 -11.33742 -11.17928 -11.07290 -10.90316 -10.57258 -10.31749 -10.23079 -9.72843 -5.05182 -0.45147 -0.18678 1.08759 1.19144 1.58496 1.67577 1.92765 2.20532 2.35662 2.89404 3.03085 3.08652 3.30428 3.37936 3.40995 3.43285 3.49370 3.62692 3.66341 3.68469 3.73171 3.73817 3.88319 3.88645 4.10535 4.17182 4.29974 4.33920 4.37081 4.43315 4.53923 4.55184 4.57472 4.59299 4.62596 4.69231 4.70192 4.75235 4.76125 4.77963 4.79941 4.82065 4.88744 4.90688 4.95884 5.01248 5.05468 5.16603 5.20550 5.22259 5.27708 5.30880 5.37246 5.52193 6.02992 6.31689 6.48520 6.67218 7.26193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.641 3.359 7 O -0.597 6.597 8 N -0.697 5.697 9 C 0.154 3.846 10 C -0.103 4.103 11 C -0.116 4.116 12 C 0.048 3.952 13 C -0.107 4.107 14 C 0.011 3.989 15 N -0.447 5.447 16 C 0.243 3.757 17 N -0.475 5.475 18 C 0.107 3.893 19 C -0.143 4.143 20 C -0.070 4.070 21 O -0.551 6.551 22 Si 0.779 3.221 23 C -0.082 4.082 24 C 0.053 3.947 25 F -0.131 7.131 26 C -0.107 4.107 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.418 0.582 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.129 0.871 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.188 0.812 47 H 0.115 0.885 48 H 0.398 0.602 49 H -0.293 1.293 50 H -0.276 1.276 51 H 0.157 0.843 52 H 0.096 0.904 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.841 3.364 4.616 7.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.395 3.605 7 O -0.488 6.488 8 N -0.357 5.357 9 C 0.032 3.968 10 C -0.122 4.122 11 C -0.155 4.155 12 C -0.040 4.040 13 C -0.144 4.144 14 C -0.116 4.116 15 N -0.169 5.169 16 C 0.013 3.987 17 N -0.186 5.186 18 C -0.051 4.051 19 C -0.146 4.146 20 C -0.180 4.180 21 O -0.359 6.359 22 Si 0.684 3.316 23 C -0.108 4.108 24 C 0.030 3.970 25 F -0.110 7.110 26 C -0.145 4.145 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.204 0.796 47 H 0.132 0.868 48 H 0.248 0.752 49 H -0.221 1.221 50 H -0.203 1.203 51 H 0.175 0.825 52 H 0.114 0.886 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.394 3.821 3.995 7.062 hybrid contribution -0.610 -0.568 -1.249 1.501 sum 3.784 3.253 2.746 5.696 Atomic orbital electron populations 1.22477 0.94018 1.03640 1.03638 1.22358 0.94503 0.92636 0.81407 1.21892 1.02457 0.90716 1.04356 1.22481 1.01586 1.02169 0.97573 1.86309 1.71524 1.23138 1.47262 1.18377 0.78774 0.80859 0.82510 1.90912 1.42373 1.71104 1.44452 1.44684 1.55264 1.12573 1.23210 1.21284 0.99918 0.78266 0.97375 1.22667 0.95499 0.96939 0.97131 1.23102 0.97300 0.96537 0.98564 1.23564 0.96646 0.86350 0.97471 1.23088 0.98077 1.00479 0.92772 1.24035 0.97237 0.99783 0.90570 1.66580 1.20256 1.30068 0.99964 1.20578 0.91917 0.92819 0.93410 1.67827 1.04849 1.20197 1.25707 1.22890 0.98635 0.96047 0.87569 1.21369 0.96433 0.98148 0.98629 1.25199 1.04042 0.92704 0.96016 1.86509 1.74194 1.27586 1.47647 0.93758 0.77091 0.75752 0.85038 1.21671 0.93479 0.99039 0.96642 1.18577 0.86242 0.95709 0.96485 1.91512 1.48039 1.75215 1.96187 1.22781 0.95555 0.94161 1.02036 0.91738 0.89414 0.91952 0.91169 0.88291 0.90989 0.92050 0.89370 0.91999 0.74451 0.91274 0.93124 0.85353 0.91993 0.89083 0.88148 0.87859 0.88318 0.88830 0.79581 0.86758 0.75201 1.22061 1.20286 0.82514 0.88579 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.73 8.37 71.98 0.60 -0.13 16 2 C 0.13 0.48 1.13 -10.79 -0.01 0.46 16 3 C -0.14 0.24 8.85 71.98 0.64 0.87 16 4 C -0.18 -0.80 8.37 71.98 0.60 -0.19 16 5 O -0.37 -2.30 9.94 -55.43 -0.55 -2.85 16 6 C 0.64 5.13 8.06 129.79 1.05 6.18 16 7 O -0.60 -8.34 11.88 19.81 0.24 -8.11 16 8 N -0.70 -0.94 5.56 -590.84 -3.29 -4.23 16 9 C 0.15 0.11 5.50 86.38 0.47 0.58 16 10 C -0.10 0.44 3.75 -10.15 -0.04 0.40 16 11 C -0.12 0.23 5.90 30.91 0.18 0.42 16 12 C 0.05 -0.06 1.29 3.32 0.00 -0.06 16 13 C -0.11 0.50 8.05 30.97 0.25 0.75 16 14 C 0.01 -0.01 7.85 86.34 0.68 0.66 16 15 N -0.45 -1.38 6.12 -664.76 -4.07 -5.45 16 16 C 0.24 0.99 4.75 133.08 0.63 1.62 16 17 N -0.48 -0.57 7.16 -193.03 -1.38 -1.95 16 18 C 0.11 -0.23 9.84 84.61 0.83 0.60 16 19 C -0.14 0.23 5.40 -19.76 -0.11 0.12 16 20 C -0.07 0.23 2.84 71.23 0.20 0.44 16 21 O -0.55 1.35 12.78 -148.98 -1.90 -0.56 16 22 Si 0.78 -4.30 29.82 68.60 2.05 -2.25 16 23 C -0.08 -0.17 9.75 22.48 0.22 0.05 16 24 C 0.05 0.30 7.35 22.59 0.17 0.47 16 25 F -0.13 -1.24 17.10 44.97 0.77 -0.48 16 26 C -0.11 0.17 7.54 30.85 0.23 0.40 16 27 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 0.61 5.88 -2.39 -0.01 0.59 16 30 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.06 0.62 5.88 -2.39 -0.01 0.61 16 34 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.42 -1.59 8.58 -92.70 -0.80 -2.39 16 37 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.05 0.24 7.88 -2.39 -0.02 0.22 16 39 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 40 H 0.06 0.17 6.73 -2.39 -0.02 0.15 16 41 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 43 H 0.10 -0.56 8.14 -2.38 -0.02 -0.58 16 44 H 0.10 -0.10 6.70 -2.39 -0.02 -0.12 16 45 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.19 -1.42 4.88 -2.91 -0.01 -1.43 16 47 H 0.12 -0.25 7.96 -2.39 -0.02 -0.27 16 48 H 0.40 -4.18 8.70 -74.05 -0.64 -4.82 16 49 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 50 H -0.28 0.39 7.11 99.48 0.71 1.09 16 51 H 0.16 0.12 8.06 -2.91 -0.02 0.09 16 52 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 53 H 0.07 0.17 8.10 -2.38 -0.02 0.15 16 Total: 0.00 -19.96 422.45 -1.99 -21.95 By element: Atomic # 1 Polarization: -9.28 SS G_CDS: -0.45 Total: -9.74 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.60 Total: 13.65 kcal Atomic # 7 Polarization: -2.89 SS G_CDS: -8.73 Total: -11.62 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -2.22 Total: -11.52 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.77 Total: -0.48 kcal Atomic # 14 Polarization: -4.30 SS G_CDS: 2.05 Total: -2.25 kcal Total: -19.96 -1.99 -21.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17310064_17656566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.881 kcal (2) G-P(sol) polarization free energy of solvation -19.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds