Wall clock time and date at job start Mon Mar 8 2021 09:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00162 * 2 1 4 4 C 1.53011 * 112.90767 * 65.96044 * 3 2 1 5 5 F 1.39905 * 109.46864 * 283.54347 * 4 3 2 6 6 F 1.39901 * 109.46968 * 43.54186 * 4 3 2 7 7 F 1.39899 * 109.46958 * 163.54258 * 4 3 2 8 8 C 1.53777 * 113.61874 * 294.71165 * 3 2 1 9 9 C 1.53790 * 87.07905 * 270.88169 * 8 3 2 10 10 H 1.08996 * 113.61179 * 219.93057 * 9 8 3 11 11 N 1.46500 * 113.61161 * 89.11422 * 9 8 3 12 12 C 1.38402 * 119.99903 * 155.00448 * 11 9 8 13 13 N 1.32492 * 119.21864 * 179.97438 * 12 11 9 14 14 C 1.32278 * 120.74185 * 179.97438 * 13 12 11 15 15 C 1.38605 * 119.19771 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.72019 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47158 * 299.99137 * 16 15 14 18 18 Si 1.86305 * 109.46815 * 179.97438 * 16 15 14 19 19 C 1.38607 * 118.55908 * 0.26549 * 15 14 13 20 20 N 1.32279 * 119.19294 * 359.45458 * 19 15 14 21 21 C 1.53775 * 113.61632 * 197.20870 * 3 2 1 22 22 H 1.08999 * 109.46706 * 297.11958 * 1 2 3 23 23 H 1.08996 * 109.47090 * 57.11563 * 1 2 3 24 24 H 1.08992 * 109.47289 * 177.12155 * 1 2 3 25 25 H 1.08997 * 113.62038 * 156.33294 * 8 3 2 26 26 H 1.09007 * 113.69137 * 25.43881 * 8 3 2 27 27 H 0.97001 * 120.00170 * 334.99968 * 11 9 8 28 28 H 1.08001 * 120.40288 * 179.97438 * 14 13 12 29 29 H 1.09002 * 109.47612 * 59.99777 * 16 15 14 30 30 H 0.96699 * 114.00015 * 300.00638 * 17 16 15 31 31 H 1.48504 * 109.99774 * 58.68297 * 18 16 15 32 32 H 1.48507 * 109.99792 * 179.97438 * 18 16 15 33 33 H 1.07995 * 120.40379 * 179.72929 * 19 15 14 34 34 H 1.08996 * 113.61626 * 334.56995 * 21 3 2 35 35 H 1.09001 * 113.61922 * 203.66781 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7280 2.0831 1.2872 5 9 0.4117 2.5564 1.2669 6 9 1.9034 1.2396 2.3895 7 9 2.6110 3.1641 1.3820 8 6 1.7228 2.1078 -1.2799 9 6 2.9995 1.4813 -1.8653 10 1 3.5961 2.1768 -2.4554 11 7 2.7670 0.2076 -2.5508 12 6 3.6392 -0.2161 -3.5383 13 7 3.4144 -1.3708 -4.1478 14 6 4.2282 -1.8044 -5.0962 15 6 5.3261 -1.0353 -5.4489 16 6 6.2751 -1.4961 -6.5250 17 8 6.8501 -2.7490 -6.1485 18 14 7.6267 -0.2327 -6.7435 19 6 5.5349 0.1644 -4.7869 20 7 4.6794 0.5425 -3.8515 21 6 3.4904 1.3207 -0.4168 22 1 -0.3633 0.4685 0.9147 23 1 -0.3633 0.5579 -0.8630 24 1 -0.3633 -1.0263 -0.0516 25 1 1.7893 3.1871 -1.1429 26 1 0.8112 1.8017 -1.7933 27 1 2.0018 -0.3388 -2.3125 28 1 4.0400 -2.7468 -5.5892 29 1 5.7321 -1.6127 -7.4629 30 1 7.3494 -2.7198 -5.3209 31 1 8.3544 -0.0408 -5.4632 32 1 8.5698 -0.6757 -7.8017 33 1 6.3832 0.7850 -5.0348 34 1 4.0057 0.3782 -0.2325 35 1 4.0402 2.1848 -0.0439 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17312454_12175864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:02:02 Heat of formation + Delta-G solvation = -119.944048 kcal Electronic energy + Delta-G solvation = -25919.077523 eV Core-core repulsion = 21506.233938 eV Total energy + Delta-G solvation = -4412.843584 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.25888 -48.78721 -48.73578 -42.20167 -41.27059 -38.25614 -37.48810 -35.23931 -34.70535 -32.10717 -29.04640 -28.10285 -26.82870 -26.53581 -25.88785 -23.96789 -23.11695 -21.11095 -20.03056 -19.55094 -19.45636 -19.13112 -18.50369 -18.08204 -17.23663 -16.63802 -16.49635 -16.20366 -15.96325 -15.87268 -15.72560 -15.65834 -15.61375 -15.54904 -15.17528 -14.94614 -14.89976 -14.59140 -14.27013 -14.01488 -13.86446 -13.44800 -13.23820 -13.09716 -12.72481 -12.34244 -12.23579 -11.90124 -11.78163 -11.69910 -11.40808 -10.91108 -10.68433 -10.04882 -9.14673 -4.89143 0.04921 0.14596 1.34083 1.51900 1.63091 1.69357 2.01259 2.10957 2.54463 2.60803 2.77332 2.84715 3.14228 3.30005 3.41789 3.46021 3.53809 3.67784 3.71767 3.79176 4.15427 4.24381 4.25895 4.31022 4.43794 4.46909 4.62118 4.64895 4.70305 4.73879 4.78955 4.83491 5.26974 5.66152 5.78372 6.01919 6.38108 6.50634 7.25662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.347 6.347 3 C 0.038 3.962 4 C 0.434 3.566 5 F -0.184 7.184 6 F -0.189 7.189 7 F -0.174 7.174 8 C -0.150 4.150 9 C 0.154 3.846 10 H 0.130 0.870 11 N -0.672 5.672 12 C 0.556 3.444 13 N -0.590 5.590 14 C 0.213 3.787 15 C -0.283 4.283 16 C -0.057 4.057 17 O -0.548 6.548 18 Si 0.761 3.239 19 C 0.195 3.805 20 N -0.572 5.572 21 C -0.131 4.131 22 H 0.045 0.955 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.106 0.894 27 H 0.418 0.582 28 H 0.181 0.819 29 H 0.132 0.868 30 H 0.385 0.615 31 H -0.280 1.280 32 H -0.302 1.302 33 H 0.190 0.810 34 H 0.082 0.918 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 3.251 -3.270 4.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.265 6.265 3 C -0.005 4.005 4 C 0.380 3.620 5 F -0.165 7.165 6 F -0.171 7.171 7 F -0.155 7.155 8 C -0.188 4.188 9 C 0.047 3.953 10 H 0.148 0.852 11 N -0.309 5.309 12 C 0.199 3.801 13 N -0.312 5.312 14 C 0.045 3.955 15 C -0.291 4.291 16 C -0.168 4.168 17 O -0.355 6.355 18 Si 0.666 3.334 19 C 0.028 3.972 20 N -0.294 5.294 21 C -0.170 4.170 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.130 0.870 25 H 0.155 0.845 26 H 0.124 0.876 27 H 0.257 0.743 28 H 0.198 0.802 29 H 0.149 0.851 30 H 0.234 0.766 31 H -0.206 1.206 32 H -0.229 1.229 33 H 0.206 0.794 34 H 0.101 0.899 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.648 3.546 -2.913 4.634 hybrid contribution 0.139 -1.364 0.927 1.655 sum -0.508 2.181 -1.986 2.993 Atomic orbital electron populations 1.23285 0.78654 1.05306 1.01804 1.88092 1.22072 1.22475 1.93884 1.24155 1.00355 0.86231 0.89725 1.21456 0.74194 0.78720 0.87669 1.93187 1.37143 1.89351 1.96823 1.93188 1.95040 1.71214 1.57629 1.93176 1.68756 1.57022 1.96591 1.24054 1.00313 1.02270 0.92178 1.21604 0.96821 0.85008 0.91869 0.85223 1.43880 1.27879 1.22824 1.36291 1.19556 0.87143 0.85787 0.87589 1.67981 1.34006 1.15688 1.13559 1.23129 0.86630 0.97827 0.87881 1.21705 1.02201 0.99726 1.05456 1.24879 1.01147 0.92869 0.97858 1.86588 1.71510 1.31168 1.46273 0.94327 0.77210 0.83718 0.78100 1.23211 0.94941 0.92389 0.86672 1.67952 1.05856 1.35250 1.20368 1.23817 0.90859 1.05701 0.96633 0.93642 0.91108 0.86984 0.84542 0.87571 0.74280 0.80176 0.85072 0.76550 1.20623 1.22948 0.79389 0.89900 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.34 113.37 1.17 1.16 16 2 O -0.35 -0.16 9.05 -148.98 -1.35 -1.51 16 3 C 0.04 -0.06 0.85 -10.27 -0.01 -0.07 16 4 C 0.43 0.74 2.51 71.99 0.18 0.92 16 5 F -0.18 -0.38 15.38 44.97 0.69 0.31 16 6 F -0.19 -1.19 17.10 44.97 0.77 -0.42 16 7 F -0.17 -0.21 15.82 44.97 0.71 0.50 16 8 C -0.15 0.93 6.66 31.12 0.21 1.13 16 9 C 0.15 -0.54 4.33 45.52 0.20 -0.35 16 10 H 0.13 -0.53 7.37 -2.39 -0.02 -0.55 16 11 N -0.67 -0.18 5.30 -327.92 -1.74 -1.92 16 12 C 0.56 2.15 8.43 261.49 2.20 4.36 16 13 N -0.59 -2.95 10.46 -197.98 -2.07 -5.02 16 14 C 0.21 0.24 10.92 84.71 0.93 1.16 16 15 C -0.28 0.53 5.40 -19.69 -0.11 0.43 16 16 C -0.06 0.23 2.85 71.23 0.20 0.44 16 17 O -0.55 0.32 12.79 -148.98 -1.91 -1.58 16 18 Si 0.76 -3.93 29.87 68.60 2.05 -1.88 16 19 C 0.19 -0.31 9.92 84.71 0.84 0.53 16 20 N -0.57 -1.30 9.13 -197.99 -1.81 -3.11 16 21 C -0.13 0.34 7.13 31.12 0.22 0.56 16 22 H 0.04 -0.07 6.59 -2.39 -0.02 -0.09 16 23 H 0.07 -0.47 6.61 -2.39 -0.02 -0.49 16 24 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H 0.14 -1.25 8.06 -2.39 -0.02 -1.27 16 26 H 0.11 -0.79 6.69 -2.38 -0.02 -0.81 16 27 H 0.42 0.08 7.71 -92.71 -0.71 -0.63 16 28 H 0.18 -0.38 8.06 -2.91 -0.02 -0.41 16 29 H 0.13 -0.82 7.96 -2.39 -0.02 -0.84 16 30 H 0.39 -2.11 8.70 -74.06 -0.64 -2.76 16 31 H -0.28 0.39 7.11 99.48 0.71 1.09 16 32 H -0.30 -0.95 7.11 99.48 0.71 -0.24 16 33 H 0.19 -1.35 5.04 -2.91 -0.01 -1.36 16 34 H 0.08 0.06 8.14 -2.39 -0.02 0.05 16 35 H 0.14 -0.73 7.01 -2.39 -0.02 -0.74 16 Total: 0.00 -15.29 304.51 1.25 -14.04 By element: Atomic # 1 Polarization: -9.55 SS G_CDS: -0.14 Total: -9.70 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.04 Total: 10.27 kcal Atomic # 7 Polarization: -4.43 SS G_CDS: -5.62 Total: -10.04 kcal Atomic # 8 Polarization: 0.16 SS G_CDS: -3.25 Total: -3.09 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 2.17 Total: 0.39 kcal Atomic # 14 Polarization: -3.93 SS G_CDS: 2.05 Total: -1.88 kcal Total: -15.29 1.25 -14.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17312454_12175864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.903 kcal (2) G-P(sol) polarization free energy of solvation -15.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds