Wall clock time and date at job start Mon Mar 8 2021 09:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00213 * 2 1 4 4 C 1.53009 * 112.85092 * 65.08054 * 3 2 1 5 5 F 1.39896 * 109.46971 * 54.18678 * 4 3 2 6 6 F 1.39894 * 109.47399 * 174.18784 * 4 3 2 7 7 F 1.39904 * 109.46775 * 294.18849 * 4 3 2 8 8 C 1.53776 * 113.61562 * 293.88502 * 3 2 1 9 9 C 1.53781 * 87.08250 * 270.88225 * 8 3 2 10 10 H 1.08997 * 113.61673 * 219.94074 * 9 8 3 11 11 N 1.46503 * 113.61314 * 89.11269 * 9 8 3 12 12 C 1.39141 * 119.99753 * 155.00312 * 11 9 8 13 13 N 1.32343 * 119.72065 * 0.02562 * 12 11 9 14 14 C 1.32001 * 121.64770 * 179.97438 * 13 12 11 15 15 C 1.37984 * 120.90274 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.32875 * 180.02562 * 15 14 13 17 17 O 1.42900 * 109.47239 * 244.99768 * 16 15 14 18 18 Si 1.86300 * 109.47208 * 4.99874 * 16 15 14 19 19 C 1.38901 * 119.34662 * 359.97438 * 15 14 13 20 20 C 1.38446 * 118.48544 * 359.74755 * 19 15 14 21 21 F 1.35098 * 120.47658 * 180.26658 * 20 19 15 22 22 C 1.53781 * 113.61596 * 196.27206 * 3 2 1 23 23 H 1.08997 * 109.47010 * 293.66131 * 1 2 3 24 24 H 1.08999 * 109.47316 * 173.65858 * 1 2 3 25 25 H 1.09003 * 109.46920 * 53.65630 * 1 2 3 26 26 H 1.08997 * 113.61735 * 25.42876 * 8 3 2 27 27 H 1.09001 * 113.61739 * 156.25133 * 8 3 2 28 28 H 0.97000 * 119.99716 * 335.00432 * 11 9 8 29 29 H 1.08005 * 119.55096 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.47254 * 124.99658 * 16 15 14 31 31 H 0.96705 * 113.99593 * 59.99159 * 17 16 15 32 32 H 1.48501 * 109.99798 * 58.67904 * 18 16 15 33 33 H 1.48494 * 110.00115 * 180.02562 * 18 16 15 34 34 H 1.08004 * 120.76129 * 179.97438 * 19 15 14 35 35 H 1.08996 * 113.61801 * 203.66183 * 22 3 2 36 36 H 1.08999 * 113.61575 * 334.56966 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7092 2.0898 1.2787 5 9 2.0990 1.3360 2.3909 6 9 2.4161 3.2970 1.2627 7 9 0.3373 2.3538 1.3518 8 6 1.7397 2.1002 -1.2883 9 6 3.0238 1.4704 -1.8532 10 1 3.6283 2.1624 -2.4394 11 7 2.8003 0.1926 -2.5341 12 6 3.6902 -0.2391 -3.5128 13 7 4.7368 0.5088 -3.8239 14 6 5.6050 0.1360 -4.7457 15 6 5.4508 -1.0559 -5.4237 16 6 6.4501 -1.4691 -6.4733 17 8 5.8110 -1.5072 -7.7508 18 14 7.8500 -0.2405 -6.5158 19 6 4.3660 -1.8716 -5.1285 20 6 3.4749 -1.4579 -4.1531 21 9 2.4089 -2.2224 -3.8301 22 6 3.4965 1.3180 -0.3948 23 1 -0.3633 0.4124 0.9413 24 1 -0.3634 -1.0213 -0.1135 25 1 -0.3633 0.6090 -0.8278 26 1 0.8348 1.7900 -1.8109 27 1 1.8030 3.1803 -1.1565 28 1 2.0320 -0.3524 -2.3026 29 1 6.4475 0.7726 -4.9724 30 1 6.8415 -2.4577 -6.2332 31 1 5.4382 -0.6595 -8.0295 32 1 8.5028 -0.1682 -5.1839 33 1 8.8421 -0.6364 -7.5473 34 1 4.2230 -2.8090 -5.6454 35 1 4.0407 2.1846 -0.0195 36 1 4.0089 0.3766 -0.1965 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17312454_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:02:11 Heat of formation + Delta-G solvation = -182.119095 kcal Electronic energy + Delta-G solvation = -28366.603030 eV Core-core repulsion = 23547.035269 eV Total energy + Delta-G solvation = -4819.567761 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.093 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.27144 -49.95640 -48.80621 -48.74435 -41.74084 -41.00017 -38.12136 -37.35891 -35.16883 -33.19926 -31.32511 -28.98907 -28.07532 -26.82782 -26.41679 -25.27080 -23.63525 -22.93380 -21.08245 -19.97868 -19.56194 -19.40029 -19.10261 -18.38177 -18.23798 -17.52472 -17.21416 -17.01900 -16.53651 -16.12651 -16.06957 -15.84380 -15.79326 -15.61287 -15.54166 -15.37634 -15.20489 -15.03687 -14.92797 -14.84588 -14.41990 -14.30019 -13.94664 -13.80096 -13.52271 -13.29438 -13.22910 -12.71814 -12.54661 -12.27618 -12.13504 -11.73473 -11.39168 -10.90387 -10.72136 -10.67881 -10.39369 -8.80276 -4.95088 -0.08107 0.09418 1.34156 1.51549 1.69718 1.82048 2.03649 2.13153 2.51562 2.55101 2.61993 2.85364 3.02629 3.22036 3.32876 3.44775 3.51340 3.55550 3.69028 3.87115 3.98596 4.15246 4.24433 4.31414 4.42292 4.45227 4.47464 4.49028 4.63897 4.72890 4.73507 4.77449 4.82157 4.99655 5.38227 5.67447 5.95735 6.16302 6.82012 6.92697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.349 6.349 3 C 0.038 3.962 4 C 0.434 3.566 5 F -0.189 7.189 6 F -0.174 7.174 7 F -0.185 7.185 8 C -0.153 4.153 9 C 0.152 3.848 10 H 0.131 0.869 11 N -0.695 5.695 12 C 0.385 3.615 13 N -0.520 5.520 14 C 0.151 3.849 15 C -0.205 4.205 16 C -0.060 4.060 17 O -0.556 6.556 18 Si 0.777 3.223 19 C -0.041 4.041 20 C -0.038 4.038 21 F -0.142 7.142 22 C -0.131 4.131 23 H 0.049 0.951 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.416 0.584 29 H 0.188 0.812 30 H 0.109 0.891 31 H 0.396 0.604 32 H -0.280 1.280 33 H -0.299 1.299 34 H 0.152 0.848 35 H 0.133 0.867 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 3.893 -3.225 5.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.267 6.267 3 C -0.005 4.005 4 C 0.380 3.620 5 F -0.171 7.171 6 F -0.155 7.155 7 F -0.166 7.166 8 C -0.191 4.191 9 C 0.045 3.955 10 H 0.149 0.851 11 N -0.328 5.328 12 C 0.147 3.853 13 N -0.237 5.237 14 C -0.006 4.006 15 C -0.210 4.210 16 C -0.170 4.170 17 O -0.364 6.364 18 Si 0.682 3.318 19 C -0.068 4.068 20 C -0.064 4.064 21 F -0.121 7.121 22 C -0.170 4.170 23 H 0.068 0.932 24 H 0.129 0.871 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.154 0.846 28 H 0.255 0.745 29 H 0.204 0.796 30 H 0.127 0.873 31 H 0.246 0.754 32 H -0.207 1.207 33 H -0.227 1.227 34 H 0.170 0.830 35 H 0.151 0.849 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.800 4.173 -2.520 4.941 hybrid contribution -1.322 -1.779 0.670 2.316 sum -0.523 2.394 -1.850 3.071 Atomic orbital electron populations 1.23352 0.78699 1.05243 1.02068 1.88080 1.22068 1.22586 1.93916 1.24165 1.00362 0.86108 0.89865 1.21509 0.74154 0.78881 0.87503 1.93187 1.90793 1.76205 1.56882 1.93181 1.78530 1.47096 1.96690 1.93168 1.32263 1.94332 1.96875 1.24065 1.00403 1.02334 0.92262 1.21634 0.96583 0.85384 0.91852 0.85116 1.44299 1.27423 1.22788 1.38256 1.18501 0.89765 0.88057 0.88937 1.67331 1.03743 1.33267 1.19328 1.22722 0.95786 0.93196 0.88922 1.21000 0.99403 0.97261 1.03374 1.25010 1.00911 1.08688 0.82433 1.86486 1.77343 1.39736 1.32866 0.93855 0.75248 0.84928 0.77731 1.21438 0.91781 1.00434 0.93101 1.18156 0.91043 0.92821 1.04359 1.91467 1.53772 1.74680 1.92191 1.23845 0.90523 1.05642 0.97005 0.93220 0.87114 0.91200 0.87767 0.84632 0.74522 0.79562 0.87328 0.75362 1.20672 1.22706 0.83010 0.84897 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.18 113.37 1.15 1.15 16 2 O -0.35 -0.20 9.22 -148.98 -1.37 -1.57 16 3 C 0.04 -0.06 0.79 -10.27 -0.01 -0.07 16 4 C 0.43 0.77 2.61 71.99 0.19 0.96 16 5 F -0.19 -1.18 17.26 44.97 0.78 -0.41 16 6 F -0.17 -0.18 15.72 44.97 0.71 0.53 16 7 F -0.18 -0.46 14.85 44.97 0.67 0.21 16 8 C -0.15 0.94 6.78 31.12 0.21 1.15 16 9 C 0.15 -0.61 4.36 45.61 0.20 -0.41 16 10 H 0.13 -0.64 7.41 -2.39 -0.02 -0.66 16 11 N -0.69 0.54 5.30 -321.33 -1.70 -1.16 16 12 C 0.39 0.71 7.49 133.08 1.00 1.71 16 13 N -0.52 -0.28 9.13 -193.03 -1.76 -2.04 16 14 C 0.15 -0.43 9.84 84.61 0.83 0.41 16 15 C -0.21 0.44 5.36 -19.77 -0.11 0.33 16 16 C -0.06 0.21 2.82 71.24 0.20 0.41 16 17 O -0.56 1.36 12.84 -148.98 -1.91 -0.55 16 18 Si 0.78 -4.20 29.83 68.60 2.05 -2.15 16 19 C -0.04 -0.03 9.82 22.48 0.22 0.19 16 20 C -0.04 -0.11 7.35 22.59 0.17 0.05 16 21 F -0.14 -0.73 16.65 44.97 0.75 0.02 16 22 C -0.13 0.36 7.18 31.22 0.22 0.59 16 23 H 0.05 -0.06 6.30 -2.39 -0.02 -0.07 16 24 H 0.11 -0.59 8.14 -2.39 -0.02 -0.61 16 25 H 0.07 -0.44 6.57 -2.39 -0.02 -0.45 16 26 H 0.10 -0.77 6.72 -2.39 -0.02 -0.78 16 27 H 0.14 -1.22 7.69 -2.39 -0.02 -1.24 16 28 H 0.42 -0.27 7.06 -92.71 -0.65 -0.93 16 29 H 0.19 -1.60 4.91 -2.91 -0.01 -1.62 16 30 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 31 H 0.40 -4.20 8.70 -74.05 -0.64 -4.85 16 32 H -0.28 0.24 7.11 99.48 0.71 0.95 16 33 H -0.30 -0.82 7.11 99.48 0.71 -0.11 16 34 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 35 H 0.13 -0.74 7.29 -2.39 -0.02 -0.75 16 36 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 Total: 0.00 -14.52 314.53 2.39 -12.13 By element: Atomic # 1 Polarization: -11.39 SS G_CDS: -0.08 Total: -11.47 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.28 Total: 6.47 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -3.47 Total: -3.20 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: -3.29 Total: -2.12 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 2.90 Total: 0.35 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.05 Total: -2.15 kcal Total: -14.52 2.39 -12.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17312454_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.992 kcal (2) G-P(sol) polarization free energy of solvation -14.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds