Wall clock time and date at job start Mon Mar 8 2021 09:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47154 * 2 1 4 4 C 1.53002 * 109.46780 * 240.00200 * 2 1 3 5 5 Si 1.86298 * 109.46960 * 120.00425 * 2 1 3 6 6 C 1.86300 * 109.47164 * 299.99357 * 5 2 1 7 7 C 1.86310 * 109.46577 * 179.97438 * 5 2 1 8 8 O 1.63094 * 109.47173 * 60.00039 * 5 2 1 9 9 C 1.35901 * 113.99620 * 179.97438 * 8 5 2 10 10 C 1.38772 * 120.01900 * 89.99889 * 9 8 5 11 11 C 1.38214 * 120.09013 * 179.97438 * 10 9 8 12 12 C 1.38117 * 120.12687 * 359.97438 * 11 10 9 13 13 C 1.38958 * 120.03923 * 0.27862 * 12 11 10 14 14 N 1.39804 * 120.04435 * 179.72140 * 13 12 11 15 15 C 1.38530 * 119.99925 * 326.66407 * 14 13 12 16 16 N 1.32491 * 119.21751 * 354.15904 * 15 14 13 17 17 C 1.32276 * 120.73904 * 179.71480 * 16 15 14 18 18 C 1.38609 * 119.19409 * 0.54092 * 17 16 15 19 19 C 1.50701 * 120.72062 * 179.71046 * 18 17 16 20 20 O 1.42896 * 109.47310 * 120.02117 * 19 18 17 21 21 Si 1.86303 * 109.47103 * 0.02562 * 19 18 17 22 22 H 1.48496 * 109.46873 * 60.00238 * 21 19 18 23 23 H 1.48501 * 109.47032 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47251 * 300.00187 * 21 19 18 25 25 C 1.38619 * 118.56032 * 359.73212 * 18 17 16 26 26 N 1.32265 * 119.19373 * 359.97438 * 25 18 17 27 27 C 1.38614 * 120.01750 * 269.97481 * 9 8 5 28 28 H 1.08999 * 109.46710 * 299.99709 * 1 2 3 29 29 H 1.08999 * 109.47260 * 59.99406 * 1 2 3 30 30 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47142 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47004 * 300.00509 * 3 2 1 33 33 H 1.09008 * 109.47004 * 60.00231 * 3 2 1 34 34 H 1.08995 * 109.47143 * 300.00362 * 4 2 1 35 35 H 1.09009 * 109.46915 * 60.00241 * 4 2 1 36 36 H 1.08997 * 109.46939 * 179.97438 * 4 2 1 37 37 H 1.08999 * 109.46876 * 180.02562 * 6 5 2 38 38 H 1.09001 * 109.47462 * 300.00777 * 6 5 2 39 39 H 1.09000 * 109.46578 * 60.00394 * 6 5 2 40 40 H 1.08999 * 109.46986 * 299.99800 * 7 5 2 41 41 H 1.08997 * 109.47231 * 60.00307 * 7 5 2 42 42 H 1.08998 * 109.46466 * 179.97438 * 7 5 2 43 43 H 1.07998 * 119.95228 * 0.02562 * 10 9 8 44 44 H 1.07999 * 119.93526 * 179.97438 * 11 10 9 45 45 H 1.08003 * 119.97932 * 180.02562 * 12 11 10 46 46 H 0.97000 * 119.99905 * 146.67380 * 14 13 12 47 47 H 1.07999 * 120.40172 * 180.26783 * 17 16 15 48 48 H 1.09002 * 109.47082 * 240.02247 * 19 18 17 49 49 H 0.96694 * 114.00149 * 300.00097 * 20 19 18 50 50 H 1.07993 * 120.40278 * 180.02562 * 25 18 17 51 51 H 1.07996 * 120.06604 * 0.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5302 -0.0001 3.0423 7 6 4.0141 -0.8790 1.5206 8 8 1.6074 -2.4160 1.5210 9 6 2.0088 -3.1442 2.5959 10 6 1.2331 -3.1695 3.7462 11 6 1.6397 -3.9101 4.8401 12 6 2.8189 -4.6277 4.7919 13 6 3.6024 -4.6019 3.6445 14 7 4.7989 -5.3236 3.5977 15 6 5.5600 -5.4780 4.7448 16 7 5.2020 -4.8397 5.8493 17 6 5.9036 -4.9700 6.9630 18 6 7.0307 -5.7767 6.9616 19 6 7.8589 -5.9445 8.2094 20 8 7.8841 -7.3236 8.5826 21 14 7.1120 -4.9412 9.5901 22 1 5.7267 -5.4095 9.8488 23 1 7.9285 -5.1060 10.8195 24 1 7.0857 -3.5080 9.2024 25 6 7.3798 -6.4255 5.7875 26 7 6.6313 -6.2569 4.7101 27 6 3.1932 -3.8626 2.5436 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 1.8939 -0.5138 3.9322 38 1 1.8935 1.0276 3.0423 39 1 0.4402 -0.0001 3.0422 40 1 4.3770 -1.3930 0.6305 41 1 4.3778 0.1485 1.5205 42 1 4.3774 -1.3925 2.4107 43 1 0.3100 -2.6104 3.7865 44 1 1.0343 -3.9276 5.7342 45 1 3.1341 -5.2059 5.6479 46 1 5.0961 -5.7160 2.7619 47 1 5.6044 -4.4505 7.8614 48 1 8.8758 -5.6008 8.0195 49 1 7.0115 -7.6972 8.7670 50 1 8.2519 -7.0616 5.7530 51 1 3.7982 -3.8441 1.6492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17313438_12175864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:06 Heat of formation + Delta-G solvation = -30.125544 kcal Electronic energy + Delta-G solvation = -30231.903009 eV Core-core repulsion = 26255.355793 eV Total energy + Delta-G solvation = -3976.547216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.38120 -40.90308 -38.72232 -37.86319 -36.91562 -36.13275 -34.87076 -32.97289 -31.07100 -30.07894 -29.28835 -29.07162 -27.92615 -27.43630 -26.85111 -25.99414 -23.89695 -23.53077 -22.67537 -20.56772 -19.70753 -19.54242 -18.37314 -18.03123 -17.32122 -16.99310 -16.79462 -16.52620 -16.34345 -16.13547 -15.95093 -15.73847 -15.56743 -14.92961 -14.85786 -14.79549 -14.62623 -14.42497 -14.07142 -13.96383 -13.67886 -13.46666 -13.41904 -13.26714 -13.15603 -12.98358 -12.97235 -12.66714 -12.47898 -12.40299 -12.34683 -12.24281 -12.01658 -11.90597 -11.86623 -11.75325 -11.71052 -11.66276 -10.72662 -10.56202 -10.24732 -10.15685 -10.08999 -9.48916 -8.73775 -0.26146 0.01224 0.31453 0.51326 1.01119 1.27038 1.31054 1.37272 1.62878 1.64809 1.80381 1.94506 2.34725 2.64091 2.90858 2.99477 3.30978 3.47211 3.54718 3.61451 3.95877 4.04480 4.05185 4.07974 4.16075 4.24819 4.35012 4.42368 4.45642 4.50882 4.56284 4.67292 4.68689 4.71272 4.73643 4.76210 4.76731 4.79893 4.94286 5.04448 5.04841 5.05856 5.14294 5.28647 5.29102 5.36253 5.36868 5.41254 5.47191 5.51241 5.54895 5.57981 5.72346 5.89933 6.21710 6.24244 6.40620 7.11997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.136 4.136 5 Si 1.282 2.718 6 C -0.506 4.506 7 C -0.506 4.506 8 O -0.560 6.560 9 C 0.153 3.847 10 C -0.173 4.173 11 C -0.074 4.074 12 C -0.134 4.134 13 C 0.188 3.812 14 N -0.635 5.635 15 C 0.561 3.439 16 N -0.546 5.546 17 C 0.187 3.813 18 C -0.283 4.283 19 C -0.061 4.061 20 O -0.538 6.538 21 Si 0.938 3.062 22 H -0.248 1.248 23 H -0.247 1.247 24 H -0.247 1.247 25 C 0.224 3.776 26 N -0.558 5.558 27 C -0.187 4.187 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.426 0.574 47 H 0.164 0.836 48 H 0.122 0.878 49 H 0.377 0.623 50 H 0.177 0.823 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 0.782 2.007 2.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.416 4.416 3 C -0.194 4.194 4 C -0.193 4.193 5 Si 1.416 2.584 6 C -0.609 4.609 7 C -0.609 4.609 8 O -0.514 6.514 9 C 0.108 3.892 10 C -0.193 4.193 11 C -0.093 4.093 12 C -0.155 4.155 13 C 0.092 3.908 14 N -0.264 5.264 15 C 0.205 3.795 16 N -0.267 5.267 17 C 0.019 3.981 18 C -0.290 4.290 19 C -0.173 4.173 20 O -0.342 6.342 21 Si 0.759 3.241 22 H -0.171 1.171 23 H -0.170 1.170 24 H -0.171 1.171 25 C 0.056 3.944 26 N -0.279 5.279 27 C -0.209 4.209 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.266 0.734 47 H 0.181 0.819 48 H 0.140 0.860 49 H 0.224 0.776 50 H 0.194 0.806 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.269 1.342 1.591 2.099 hybrid contribution 0.461 -0.144 -0.002 0.483 sum 0.193 1.198 1.589 2.000 Atomic orbital electron populations 1.21538 0.93651 1.02094 1.02023 1.25743 1.00814 1.02732 1.12338 1.21559 1.00850 0.94698 1.02315 1.21537 1.00702 1.00250 0.96820 0.76994 0.63543 0.52334 0.65519 1.26986 1.06984 1.09332 1.17586 1.27004 1.24290 1.04856 1.04757 1.83798 1.77779 1.45205 1.44575 1.17634 0.92024 0.94130 0.85370 1.21279 1.01572 1.03764 0.92661 1.20874 0.95462 0.95070 0.97908 1.21105 0.93986 1.02121 0.98248 1.17276 0.85185 0.93265 0.95107 1.41495 1.20580 1.55315 1.08968 1.19261 0.86628 0.87018 0.86557 1.68157 1.33634 1.25499 0.99393 1.22920 0.88496 0.91268 0.95404 1.21814 1.01236 1.06162 0.99808 1.24670 1.04542 0.89670 0.98393 1.86530 1.34409 1.23157 1.90141 0.85843 0.80360 0.79317 0.78530 1.17115 1.16995 1.17087 1.22903 0.95054 0.91154 0.85275 1.67954 1.07443 1.20398 1.32059 1.20870 0.98602 1.01538 0.99895 0.92534 0.92563 0.92152 0.92445 0.92294 0.92395 0.92171 0.92550 0.92606 0.90835 0.90528 0.90729 0.90888 0.90523 0.91025 0.84971 0.85008 0.84620 0.73445 0.81896 0.86037 0.77570 0.80609 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 7.85 37.16 0.29 0.30 16 2 C -0.37 0.09 0.53 -90.62 -0.05 0.04 16 3 C -0.14 0.09 7.85 37.16 0.29 0.38 16 4 C -0.14 0.00 7.85 37.16 0.29 0.29 16 5 Si 1.28 -0.45 8.27 -169.99 -1.41 -1.86 16 6 C -0.51 0.10 8.31 101.05 0.84 0.94 16 7 C -0.51 -0.07 8.31 101.05 0.84 0.77 16 8 O -0.56 -0.79 8.52 -19.43 -0.17 -0.96 16 9 C 0.15 0.26 4.63 -39.25 -0.18 0.08 16 10 C -0.17 -0.17 8.77 -39.39 -0.35 -0.52 16 11 C -0.07 -0.05 10.03 -39.63 -0.40 -0.44 16 12 C -0.13 -0.22 8.55 -39.36 -0.34 -0.56 16 13 C 0.19 0.33 6.28 -83.75 -0.53 -0.20 16 14 N -0.63 -0.83 5.49 -11.64 -0.06 -0.90 16 15 C 0.56 1.33 8.16 -322.62 -2.63 -1.30 16 16 N -0.55 -1.13 7.10 -13.90 -0.10 -1.23 16 17 C 0.19 0.01 9.92 -17.22 -0.17 -0.16 16 18 C -0.28 0.25 5.40 -104.34 -0.56 -0.31 16 19 C -0.06 0.14 2.85 36.01 0.10 0.25 16 20 O -0.54 0.89 12.79 -35.23 -0.45 0.44 16 21 Si 0.94 -2.15 25.15 -169.99 -4.28 -6.43 16 22 H -0.25 0.54 7.11 56.52 0.40 0.95 16 23 H -0.25 0.16 7.11 56.52 0.40 0.56 16 24 H -0.25 0.41 7.11 56.52 0.40 0.81 16 25 C 0.22 0.01 10.92 -17.22 -0.19 -0.18 16 26 N -0.56 -1.16 10.46 -13.90 -0.15 -1.30 16 27 C -0.19 -0.27 8.68 -39.24 -0.34 -0.61 16 28 H 0.06 -0.04 7.79 -51.93 -0.40 -0.45 16 29 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 31 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 32 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 33 H 0.06 -0.08 7.79 -51.92 -0.40 -0.48 16 34 H 0.06 0.02 7.96 -51.93 -0.41 -0.40 16 35 H 0.06 0.01 8.14 -51.92 -0.42 -0.42 16 36 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 37 H 0.07 0.02 7.38 -51.93 -0.38 -0.37 16 38 H 0.08 -0.06 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.04 7.79 -51.93 -0.40 -0.44 16 40 H 0.07 0.00 7.79 -51.93 -0.40 -0.41 16 41 H 0.08 -0.03 7.79 -51.93 -0.40 -0.44 16 42 H 0.07 0.07 7.38 -51.93 -0.38 -0.32 16 43 H 0.13 -0.05 8.06 -52.49 -0.42 -0.47 16 44 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 45 H 0.14 0.24 6.27 -52.48 -0.33 -0.09 16 46 H 0.43 -0.16 8.93 -40.82 -0.36 -0.52 16 47 H 0.16 -0.32 5.04 -52.49 -0.26 -0.58 16 48 H 0.12 -0.40 7.96 -51.93 -0.41 -0.82 16 49 H 0.38 -1.73 8.70 45.56 0.40 -1.33 16 50 H 0.18 -0.35 8.06 -52.49 -0.42 -0.78 16 51 H 0.13 0.02 8.06 -52.49 -0.42 -0.40 16 LS Contribution 410.55 15.07 6.19 6.19 Total: 0.00 -5.87 410.55 -11.05 -16.93 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: -7.56 Total: -9.65 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.07 Total: -1.23 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -0.31 Total: -3.43 kcal Atomic # 8 Polarization: 0.10 SS G_CDS: -0.62 Total: -0.52 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: -5.68 Total: -8.29 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -5.87 -11.05 -16.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17313438_12175864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.199 kcal (2) G-P(sol) polarization free energy of solvation -5.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds