Wall clock time and date at job start Mon Mar 8 2021 09:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47154 * 2 1 4 4 C 1.53002 * 109.46780 * 240.00200 * 2 1 3 5 5 Si 1.86298 * 109.46960 * 120.00425 * 2 1 3 6 6 C 1.86300 * 109.47164 * 299.99357 * 5 2 1 7 7 C 1.86310 * 109.46577 * 179.97438 * 5 2 1 8 8 O 1.63094 * 109.47173 * 60.00039 * 5 2 1 9 9 C 1.35901 * 113.99620 * 179.97438 * 8 5 2 10 10 C 1.38772 * 120.01900 * 89.99889 * 9 8 5 11 11 C 1.38214 * 120.09013 * 179.97438 * 10 9 8 12 12 C 1.38117 * 120.12687 * 359.97438 * 11 10 9 13 13 C 1.38958 * 120.03923 * 0.27862 * 12 11 10 14 14 N 1.39804 * 120.04435 * 179.72140 * 13 12 11 15 15 C 1.38530 * 119.99925 * 326.66407 * 14 13 12 16 16 N 1.32491 * 119.21751 * 354.15904 * 15 14 13 17 17 C 1.32276 * 120.73904 * 179.71480 * 16 15 14 18 18 C 1.38609 * 119.19409 * 0.54092 * 17 16 15 19 19 C 1.50701 * 120.72062 * 179.71046 * 18 17 16 20 20 O 1.42896 * 109.47310 * 120.02117 * 19 18 17 21 21 Si 1.86303 * 109.47103 * 0.02562 * 19 18 17 22 22 H 1.48496 * 109.46873 * 60.00238 * 21 19 18 23 23 H 1.48501 * 109.47032 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47251 * 300.00187 * 21 19 18 25 25 C 1.38619 * 118.56032 * 359.73212 * 18 17 16 26 26 N 1.32265 * 119.19373 * 359.97438 * 25 18 17 27 27 C 1.38614 * 120.01750 * 269.97481 * 9 8 5 28 28 H 1.08999 * 109.46710 * 299.99709 * 1 2 3 29 29 H 1.08999 * 109.47260 * 59.99406 * 1 2 3 30 30 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47142 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47004 * 300.00509 * 3 2 1 33 33 H 1.09008 * 109.47004 * 60.00231 * 3 2 1 34 34 H 1.08995 * 109.47143 * 300.00362 * 4 2 1 35 35 H 1.09009 * 109.46915 * 60.00241 * 4 2 1 36 36 H 1.08997 * 109.46939 * 179.97438 * 4 2 1 37 37 H 1.08999 * 109.46876 * 180.02562 * 6 5 2 38 38 H 1.09001 * 109.47462 * 300.00777 * 6 5 2 39 39 H 1.09000 * 109.46578 * 60.00394 * 6 5 2 40 40 H 1.08999 * 109.46986 * 299.99800 * 7 5 2 41 41 H 1.08997 * 109.47231 * 60.00307 * 7 5 2 42 42 H 1.08998 * 109.46466 * 179.97438 * 7 5 2 43 43 H 1.07998 * 119.95228 * 0.02562 * 10 9 8 44 44 H 1.07999 * 119.93526 * 179.97438 * 11 10 9 45 45 H 1.08003 * 119.97932 * 180.02562 * 12 11 10 46 46 H 0.97000 * 119.99905 * 146.67380 * 14 13 12 47 47 H 1.07999 * 120.40172 * 180.26783 * 17 16 15 48 48 H 1.09002 * 109.47082 * 240.02247 * 19 18 17 49 49 H 0.96694 * 114.00149 * 300.00097 * 20 19 18 50 50 H 1.07993 * 120.40278 * 180.02562 * 25 18 17 51 51 H 1.07996 * 120.06604 * 0.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5302 -0.0001 3.0423 7 6 4.0141 -0.8790 1.5206 8 8 1.6074 -2.4160 1.5210 9 6 2.0088 -3.1442 2.5959 10 6 1.2331 -3.1695 3.7462 11 6 1.6397 -3.9101 4.8401 12 6 2.8189 -4.6277 4.7919 13 6 3.6024 -4.6019 3.6445 14 7 4.7989 -5.3236 3.5977 15 6 5.5600 -5.4780 4.7448 16 7 5.2020 -4.8397 5.8493 17 6 5.9036 -4.9700 6.9630 18 6 7.0307 -5.7767 6.9616 19 6 7.8589 -5.9445 8.2094 20 8 7.8841 -7.3236 8.5826 21 14 7.1120 -4.9412 9.5901 22 1 5.7267 -5.4095 9.8488 23 1 7.9285 -5.1060 10.8195 24 1 7.0857 -3.5080 9.2024 25 6 7.3798 -6.4255 5.7875 26 7 6.6313 -6.2569 4.7101 27 6 3.1932 -3.8626 2.5436 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7208 -1.2496 37 1 1.8939 -0.5138 3.9322 38 1 1.8935 1.0276 3.0423 39 1 0.4402 -0.0001 3.0422 40 1 4.3770 -1.3930 0.6305 41 1 4.3778 0.1485 1.5205 42 1 4.3774 -1.3925 2.4107 43 1 0.3100 -2.6104 3.7865 44 1 1.0343 -3.9276 5.7342 45 1 3.1341 -5.2059 5.6479 46 1 5.0961 -5.7160 2.7619 47 1 5.6044 -4.4505 7.8614 48 1 8.8758 -5.6008 8.0195 49 1 7.0115 -7.6972 8.7670 50 1 8.2519 -7.0616 5.7530 51 1 3.7982 -3.8441 1.6492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17313438_12175864.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:04 Heat of formation + Delta-G solvation = -20.894559 kcal Electronic energy + Delta-G solvation = -30231.502724 eV Core-core repulsion = 26255.355793 eV Total energy + Delta-G solvation = -3976.146930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.40274 -40.94663 -38.72097 -37.78481 -36.88574 -36.15188 -34.90670 -32.95817 -31.10881 -30.11337 -29.28176 -29.05681 -27.87761 -27.42480 -26.79469 -25.99778 -23.88731 -23.57090 -22.70681 -20.54994 -19.72260 -19.56669 -18.30428 -18.01191 -17.36405 -17.02372 -16.81515 -16.46363 -16.27498 -16.12730 -15.91694 -15.73313 -15.55399 -14.89258 -14.81215 -14.75819 -14.63058 -14.34790 -14.05080 -13.98937 -13.68957 -13.46493 -13.40819 -13.24575 -13.15475 -12.97213 -12.93932 -12.66419 -12.44369 -12.39129 -12.25269 -12.15373 -12.02603 -11.91290 -11.88884 -11.68805 -11.67641 -11.63848 -10.63775 -10.56378 -10.27243 -10.13857 -10.06699 -9.54704 -8.78825 -0.28510 0.00962 0.26084 0.47209 1.18549 1.26437 1.48478 1.52946 1.63065 1.66308 1.95453 1.97165 2.35521 2.61053 2.85621 3.00927 3.46640 3.53721 3.59189 3.70528 3.94367 4.05975 4.08682 4.12066 4.16473 4.21539 4.31894 4.44547 4.50265 4.53219 4.66424 4.67613 4.68690 4.73802 4.76072 4.78211 4.80582 4.81832 4.97954 5.07037 5.07570 5.09064 5.17617 5.25764 5.31381 5.34304 5.38189 5.41647 5.44398 5.49522 5.53297 5.60176 5.69010 5.88020 6.16728 6.21968 6.71469 7.08660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.373 4.373 3 C -0.142 4.142 4 C -0.140 4.140 5 Si 1.301 2.699 6 C -0.510 4.510 7 C -0.512 4.512 8 O -0.570 6.570 9 C 0.143 3.857 10 C -0.180 4.180 11 C -0.073 4.073 12 C -0.144 4.144 13 C 0.181 3.819 14 N -0.634 5.634 15 C 0.545 3.455 16 N -0.562 5.562 17 C 0.177 3.823 18 C -0.270 4.270 19 C -0.054 4.054 20 O -0.549 6.549 21 Si 0.968 3.032 22 H -0.247 1.247 23 H -0.270 1.270 24 H -0.255 1.255 25 C 0.216 3.784 26 N -0.575 5.575 27 C -0.195 4.195 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.145 0.855 44 H 0.153 0.847 45 H 0.132 0.868 46 H 0.430 0.570 47 H 0.180 0.820 48 H 0.134 0.866 49 H 0.389 0.611 50 H 0.195 0.805 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 1.059 2.620 2.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.417 4.417 3 C -0.199 4.199 4 C -0.197 4.197 5 Si 1.435 2.565 6 C -0.613 4.613 7 C -0.614 4.614 8 O -0.523 6.523 9 C 0.099 3.901 10 C -0.200 4.200 11 C -0.092 4.092 12 C -0.165 4.165 13 C 0.085 3.915 14 N -0.264 5.264 15 C 0.190 3.810 16 N -0.283 5.283 17 C 0.010 3.990 18 C -0.278 4.278 19 C -0.166 4.166 20 O -0.356 6.356 21 Si 0.791 3.209 22 H -0.171 1.171 23 H -0.195 1.195 24 H -0.179 1.179 25 C 0.049 3.951 26 N -0.296 5.296 27 C -0.217 4.217 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.163 0.837 44 H 0.170 0.830 45 H 0.150 0.850 46 H 0.270 0.730 47 H 0.197 0.803 48 H 0.151 0.849 49 H 0.238 0.762 50 H 0.212 0.788 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.224 1.608 2.203 2.737 hybrid contribution 0.479 -0.248 -0.153 0.560 sum 0.255 1.361 2.050 2.474 Atomic orbital electron populations 1.21581 0.93839 1.01937 1.02342 1.25762 1.00702 1.03067 1.12166 1.21617 1.01313 0.94360 1.02616 1.21582 1.01111 1.00044 0.96994 0.76666 0.62826 0.51658 0.65319 1.27013 1.07327 1.09697 1.17274 1.27083 1.24949 1.05108 1.04309 1.83794 1.77985 1.45880 1.44689 1.17802 0.92253 0.94330 0.85705 1.21476 1.01987 1.03956 0.92538 1.21117 0.95210 0.94301 0.98544 1.21186 0.94532 1.02618 0.98187 1.17394 0.85377 0.93438 0.95320 1.41504 1.20487 1.55343 1.09082 1.19431 0.87073 0.87584 0.86941 1.68163 1.34328 1.25935 0.99846 1.23272 0.88696 0.91552 0.95455 1.21931 1.00725 1.05077 1.00042 1.24688 1.04961 0.89529 0.97423 1.86507 1.35698 1.23337 1.90062 0.85418 0.79717 0.78585 0.77131 1.17068 1.19461 1.17924 1.23289 0.95325 0.91364 0.85139 1.67970 1.07768 1.20807 1.33069 1.20965 0.98875 1.01673 1.00161 0.91720 0.92778 0.92558 0.91859 0.92568 0.91571 0.92598 0.92730 0.92067 0.91258 0.89874 0.90298 0.90863 0.89918 0.91948 0.83743 0.82973 0.84990 0.72966 0.80339 0.84864 0.76167 0.78829 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.00 7.85 71.98 0.56 0.57 16 2 C -0.37 0.16 0.53 -10.79 -0.01 0.15 16 3 C -0.14 0.23 7.85 71.98 0.56 0.80 16 4 C -0.14 -0.06 7.85 71.98 0.56 0.50 16 5 Si 1.30 -0.72 8.27 68.60 0.57 -0.15 16 6 C -0.51 0.37 8.31 113.37 0.94 1.31 16 7 C -0.51 -0.36 8.31 113.37 0.94 0.58 16 8 O -0.57 -1.88 8.52 -92.44 -0.79 -2.67 16 9 C 0.14 0.57 4.63 22.49 0.10 0.67 16 10 C -0.18 -0.38 8.77 22.39 0.20 -0.19 16 11 C -0.07 -0.10 10.03 22.24 0.22 0.13 16 12 C -0.14 -0.58 8.55 22.41 0.19 -0.39 16 13 C 0.18 0.82 6.28 38.17 0.24 1.06 16 14 N -0.63 -2.45 5.49 -190.74 -1.05 -3.50 16 15 C 0.55 3.09 8.16 261.42 2.13 5.22 16 16 N -0.56 -2.69 7.10 -197.88 -1.41 -4.09 16 17 C 0.18 0.02 9.92 84.71 0.84 0.86 16 18 C -0.27 0.58 5.40 -19.68 -0.11 0.47 16 19 C -0.05 0.30 2.85 71.24 0.20 0.50 16 20 O -0.55 2.30 12.79 -148.98 -1.90 0.40 16 21 Si 0.97 -4.84 25.15 68.60 1.73 -3.11 16 22 H -0.25 1.27 7.11 99.48 0.71 1.97 16 23 H -0.27 0.28 7.11 99.48 0.71 0.98 16 24 H -0.26 0.94 7.11 99.48 0.71 1.64 16 25 C 0.22 0.00 10.92 84.72 0.93 0.92 16 26 N -0.58 -2.73 10.46 -197.88 -2.07 -4.80 16 27 C -0.20 -0.75 8.68 22.49 0.20 -0.55 16 28 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 29 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.06 0.04 7.97 -2.39 -0.02 0.02 16 31 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 32 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.07 -0.22 7.79 -2.38 -0.02 -0.24 16 34 H 0.05 0.07 7.96 -2.39 -0.02 0.05 16 35 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 36 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 37 H 0.07 0.03 7.38 -2.39 -0.02 0.01 16 38 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 39 H 0.08 -0.12 7.79 -2.39 -0.02 -0.14 16 40 H 0.07 0.03 7.79 -2.39 -0.02 0.01 16 41 H 0.08 -0.07 7.79 -2.39 -0.02 -0.09 16 42 H 0.06 0.17 7.38 -2.39 -0.02 0.15 16 43 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 44 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 45 H 0.13 0.59 6.27 -2.91 -0.02 0.57 16 46 H 0.43 0.32 8.93 -92.71 -0.83 -0.51 16 47 H 0.18 -0.75 5.04 -2.91 -0.01 -0.76 16 48 H 0.13 -1.04 7.96 -2.39 -0.02 -1.05 16 49 H 0.39 -3.88 8.70 -74.06 -0.64 -4.52 16 50 H 0.19 -0.89 8.06 -2.91 -0.02 -0.91 16 51 H 0.14 0.22 8.06 -2.91 -0.02 0.19 16 Total: 0.00 -13.32 410.55 4.02 -9.30 By element: Atomic # 1 Polarization: -4.23 SS G_CDS: 0.22 Total: -4.01 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 8.72 Total: 12.63 kcal Atomic # 7 Polarization: -7.87 SS G_CDS: -4.52 Total: -12.39 kcal Atomic # 8 Polarization: 0.42 SS G_CDS: -2.69 Total: -2.27 kcal Atomic # 14 Polarization: -5.56 SS G_CDS: 2.29 Total: -3.27 kcal Total: -13.32 4.02 -9.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17313438_12175864.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.592 kcal (2) G-P(sol) polarization free energy of solvation -13.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds