Wall clock time and date at job start Mon Mar 8 2021 09:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47132 * 2 1 4 4 C 1.52997 * 109.46961 * 240.00105 * 2 1 3 5 5 Si 1.86299 * 109.46817 * 120.00195 * 2 1 3 6 6 C 1.86291 * 109.47320 * 300.00008 * 5 2 1 7 7 C 1.86300 * 109.46954 * 179.97438 * 5 2 1 8 8 O 1.63108 * 109.46860 * 59.99928 * 5 2 1 9 9 C 1.35899 * 113.99671 * 179.97438 * 8 5 2 10 10 C 1.38776 * 120.01809 * 89.99785 * 9 8 5 11 11 C 1.38219 * 120.09449 * 179.97438 * 10 9 8 12 12 C 1.38113 * 120.12865 * 0.04914 * 11 10 9 13 13 C 1.38968 * 120.03372 * 0.24992 * 12 11 10 14 14 N 1.39760 * 120.04449 * 179.72650 * 13 12 11 15 15 C 1.39085 * 120.00312 * 42.43018 * 14 13 12 16 16 C 1.39096 * 119.70094 * 7.93759 * 15 14 13 17 17 C 1.38353 * 119.09728 * 179.97438 * 16 15 14 18 18 C 1.38841 * 118.50198 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.33269 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.47316 * 64.99897 * 19 18 17 21 21 Si 1.86300 * 109.46993 * 184.99940 * 19 18 17 22 22 H 1.48505 * 109.47278 * 180.02562 * 21 19 18 23 23 H 1.48503 * 109.47400 * 299.99992 * 21 19 18 24 24 H 1.48499 * 109.47186 * 60.00117 * 21 19 18 25 25 C 1.38083 * 119.33178 * 359.97438 * 18 17 16 26 26 N 1.31932 * 120.85214 * 359.74010 * 25 18 17 27 27 C 1.38611 * 120.02219 * 269.97905 * 9 8 5 28 28 H 1.08993 * 109.47073 * 300.00251 * 1 2 3 29 29 H 1.09008 * 109.46703 * 59.99855 * 1 2 3 30 30 H 1.08994 * 109.47128 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46897 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47496 * 299.99700 * 3 2 1 33 33 H 1.08997 * 109.47140 * 60.00381 * 3 2 1 34 34 H 1.09004 * 109.47601 * 300.00316 * 4 2 1 35 35 H 1.09008 * 109.47380 * 60.00454 * 4 2 1 36 36 H 1.08999 * 109.47410 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47616 * 180.02562 * 6 5 2 38 38 H 1.09004 * 109.47342 * 299.99923 * 6 5 2 39 39 H 1.08999 * 109.47631 * 59.99652 * 6 5 2 40 40 H 1.09006 * 109.47200 * 300.00100 * 7 5 2 41 41 H 1.08993 * 109.47329 * 60.00155 * 7 5 2 42 42 H 1.08998 * 109.47260 * 180.02562 * 7 5 2 43 43 H 1.08004 * 119.94979 * 359.97438 * 10 9 8 44 44 H 1.08001 * 119.93562 * 180.02562 * 11 10 9 45 45 H 1.08000 * 119.97983 * 179.97438 * 12 11 10 46 46 H 0.97000 * 119.99459 * 222.43130 * 14 13 12 47 47 H 1.07994 * 120.45487 * 359.95540 * 16 15 14 48 48 H 1.07999 * 120.74833 * 180.02562 * 17 16 15 49 49 H 1.08996 * 109.47538 * 304.99769 * 19 18 17 50 50 H 0.96698 * 114.00306 * 179.97438 * 20 19 18 51 51 H 1.07994 * 119.57444 * 180.02562 * 25 18 17 52 52 H 1.08005 * 120.06379 * 0.03969 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8783 1.5211 6 6 1.5300 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5208 8 8 1.6072 -2.4161 1.5210 9 6 2.0086 -3.1443 2.5959 10 6 1.2328 -3.1695 3.7463 11 6 1.6392 -3.9101 4.8402 12 6 2.8190 -4.6266 4.7927 13 6 3.6031 -4.6001 3.6457 14 7 4.7999 -5.3205 3.5994 15 6 4.8563 -6.6095 4.1188 16 6 3.6860 -7.2383 4.5310 17 6 3.7565 -8.5207 5.0452 18 6 4.9997 -9.1330 5.1305 19 6 5.1241 -10.5293 5.6835 20 8 4.4518 -11.4462 4.8177 21 14 6.9247 -10.9926 5.8009 22 1 7.0473 -12.3689 6.3452 23 1 7.5389 -10.9387 4.4499 24 1 7.6233 -10.0399 6.7007 25 6 6.1209 -8.4499 4.7026 26 7 6.0230 -7.2294 4.2112 27 6 3.1929 -3.8627 2.5438 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 1.6767 -1.7489 -1.2494 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7217 -1.2491 37 1 1.8936 -0.5137 3.9322 38 1 1.8933 1.0275 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3770 -1.3931 0.6307 41 1 4.3777 0.1485 1.5206 42 1 4.3773 -1.3932 2.4105 43 1 0.3101 -2.6096 3.7867 44 1 1.0333 -3.9282 5.7341 45 1 3.1346 -5.2041 5.6491 46 1 5.5912 -4.9214 3.2051 47 1 2.7353 -6.7322 4.4511 48 1 2.8645 -9.0341 5.3729 49 1 4.6733 -10.5690 6.6751 50 1 4.4914 -12.3664 5.1122 51 1 7.0898 -8.9225 4.7668 52 1 3.7981 -3.8440 1.6494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17313438_13915762.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:21 Heat of formation + Delta-G solvation = -48.591359 kcal Electronic energy + Delta-G solvation = -29837.467720 eV Core-core repulsion = 25925.545678 eV Total energy + Delta-G solvation = -3911.922043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.80467 -40.78452 -38.63169 -37.69005 -36.93738 -36.04989 -33.55802 -32.38647 -30.88238 -30.10415 -29.34115 -29.09537 -27.94892 -27.45800 -26.47373 -25.00450 -23.53798 -23.36467 -22.27970 -20.56853 -19.37295 -18.91229 -18.47927 -17.85939 -17.49989 -16.90410 -16.65057 -16.54087 -16.20765 -15.80477 -15.66153 -15.49823 -15.05593 -14.93477 -14.83555 -14.70668 -14.50427 -14.17916 -14.06743 -13.95189 -13.90375 -13.56684 -13.48988 -13.34586 -13.23630 -13.00339 -12.99660 -12.87379 -12.49817 -12.35682 -12.26698 -12.11828 -12.06857 -11.94072 -11.76359 -11.73514 -11.66475 -10.78068 -10.61562 -10.60955 -10.28488 -10.18896 -9.98434 -9.52901 -8.57988 -0.06351 0.18066 0.30486 0.52422 1.11820 1.26957 1.40182 1.47857 1.58435 1.87131 1.88263 1.93940 2.28129 2.65693 2.83156 3.41786 3.53658 3.80806 3.83807 3.93056 4.01125 4.03093 4.05099 4.06135 4.14901 4.21965 4.27375 4.40269 4.42846 4.45494 4.61699 4.63222 4.65208 4.67555 4.69453 4.74288 4.75245 4.78100 4.92416 4.95178 5.02670 5.03102 5.11223 5.17804 5.21275 5.27328 5.30091 5.34354 5.35798 5.39277 5.42551 5.47115 5.53642 5.55072 5.91083 6.15685 6.37412 6.56372 7.07450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.136 4.136 5 Si 1.281 2.719 6 C -0.506 4.506 7 C -0.507 4.507 8 O -0.560 6.560 9 C 0.159 3.841 10 C -0.174 4.174 11 C -0.069 4.069 12 C -0.168 4.168 13 C 0.190 3.810 14 N -0.664 5.664 15 C 0.395 3.605 16 C -0.228 4.228 17 C -0.006 4.006 18 C -0.178 4.178 19 C -0.068 4.068 20 O -0.546 6.546 21 Si 0.936 3.064 22 H -0.253 1.253 23 H -0.245 1.245 24 H -0.247 1.247 25 C 0.146 3.854 26 N -0.528 5.528 27 C -0.185 4.185 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.417 0.583 47 H 0.146 0.854 48 H 0.140 0.860 49 H 0.076 0.924 50 H 0.380 0.620 51 H 0.152 0.848 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 0.213 2.765 3.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.416 4.416 3 C -0.194 4.194 4 C -0.194 4.194 5 Si 1.416 2.584 6 C -0.609 4.609 7 C -0.610 4.610 8 O -0.513 6.513 9 C 0.114 3.886 10 C -0.193 4.193 11 C -0.087 4.087 12 C -0.189 4.189 13 C 0.094 3.906 14 N -0.290 5.290 15 C 0.162 3.838 16 C -0.252 4.252 17 C -0.032 4.032 18 C -0.182 4.182 19 C -0.179 4.179 20 O -0.352 6.352 21 Si 0.759 3.241 22 H -0.177 1.177 23 H -0.169 1.169 24 H -0.170 1.170 25 C -0.012 4.012 26 N -0.243 5.243 27 C -0.207 4.207 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.150 0.850 46 H 0.255 0.745 47 H 0.164 0.836 48 H 0.158 0.842 49 H 0.094 0.906 50 H 0.228 0.772 51 H 0.169 0.831 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.090 0.807 2.049 2.204 hybrid contribution -0.559 -0.263 0.305 0.689 sum -0.468 0.544 2.353 2.460 Atomic orbital electron populations 1.21540 0.93641 1.02097 1.02053 1.25742 1.00829 1.02752 1.12310 1.21558 1.00868 0.94665 1.02343 1.21541 1.00725 1.00253 0.96832 0.77011 0.63618 0.52202 0.65614 1.26988 1.07045 1.09406 1.17474 1.27002 1.24179 1.04994 1.04799 1.83806 1.77802 1.45218 1.44505 1.17739 0.91844 0.93658 0.85328 1.21319 1.01778 1.03559 0.92671 1.20881 0.95398 0.94386 0.98085 1.21187 0.97066 1.03486 0.97177 1.17275 0.86879 0.93523 0.92916 1.41787 1.11515 1.12108 1.63633 1.18261 0.89546 0.85382 0.90623 1.21842 0.98843 0.97115 1.07357 1.21232 0.97372 0.92456 0.92126 1.20028 0.94869 0.96219 1.07086 1.24482 1.09296 0.88849 0.95289 1.86516 1.77963 1.20039 1.50656 0.85887 0.75324 0.81160 0.81756 1.17703 1.16863 1.17032 1.22211 0.97938 0.89294 0.91739 1.67090 1.25744 1.11210 1.20240 1.21047 0.97680 1.03733 0.98231 0.92523 0.92533 0.92160 0.92416 0.92277 0.92378 0.92180 0.92514 0.92576 0.90871 0.90435 0.90689 0.90774 0.90386 0.91029 0.84755 0.84725 0.84982 0.74520 0.83630 0.84199 0.90580 0.77233 0.83081 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.04 7.85 37.16 0.29 0.33 16 2 C -0.37 0.20 0.53 -90.62 -0.05 0.15 16 3 C -0.14 0.13 7.85 37.15 0.29 0.43 16 4 C -0.14 0.02 7.85 37.16 0.29 0.31 16 5 Si 1.28 -1.19 8.27 -169.99 -1.41 -2.60 16 6 C -0.51 0.45 8.31 101.05 0.84 1.29 16 7 C -0.51 0.34 8.31 101.05 0.84 1.18 16 8 O -0.56 -0.52 8.52 -19.42 -0.17 -0.68 16 9 C 0.16 0.16 4.63 -39.24 -0.18 -0.03 16 10 C -0.17 0.00 8.77 -39.39 -0.35 -0.35 16 11 C -0.07 0.05 10.03 -39.63 -0.40 -0.34 16 12 C -0.17 -0.01 7.36 -39.36 -0.29 -0.29 16 13 C 0.19 0.16 5.82 -83.77 -0.49 -0.33 16 14 N -0.66 -0.83 5.48 -9.99 -0.05 -0.89 16 15 C 0.39 1.08 7.42 -154.92 -1.15 -0.07 16 16 C -0.23 -0.38 8.07 -39.22 -0.32 -0.69 16 17 C -0.01 -0.01 9.84 -39.32 -0.39 -0.39 16 18 C -0.18 -0.28 5.39 -104.45 -0.56 -0.85 16 19 C -0.07 0.04 2.81 36.01 0.10 0.14 16 20 O -0.55 0.02 12.82 -35.23 -0.45 -0.43 16 21 Si 0.94 -0.76 25.17 -169.99 -4.28 -5.03 16 22 H -0.25 0.20 7.11 56.52 0.40 0.60 16 23 H -0.25 -0.17 7.04 56.52 0.40 0.23 16 24 H -0.25 0.05 7.11 56.52 0.40 0.45 16 25 C 0.15 0.38 9.84 -17.57 -0.17 0.20 16 26 N -0.53 -1.99 10.39 -12.41 -0.13 -2.12 16 27 C -0.19 -0.16 8.69 -39.24 -0.34 -0.50 16 28 H 0.06 -0.06 7.79 -51.93 -0.40 -0.46 16 29 H 0.06 -0.01 8.14 -51.92 -0.42 -0.43 16 30 H 0.06 0.00 7.97 -51.93 -0.41 -0.42 16 31 H 0.06 -0.09 7.80 -51.93 -0.40 -0.50 16 32 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 34 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 35 H 0.06 0.00 8.14 -51.92 -0.42 -0.42 16 36 H 0.06 -0.04 7.79 -51.93 -0.40 -0.45 16 37 H 0.07 -0.05 7.38 -51.93 -0.38 -0.43 16 38 H 0.08 -0.10 7.79 -51.93 -0.40 -0.51 16 39 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 40 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 41 H 0.08 -0.09 7.79 -51.93 -0.40 -0.50 16 42 H 0.07 -0.03 7.37 -51.93 -0.38 -0.41 16 43 H 0.13 -0.17 8.06 -52.48 -0.42 -0.59 16 44 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 45 H 0.13 -0.06 6.72 -52.49 -0.35 -0.42 16 46 H 0.42 0.08 8.95 -40.82 -0.37 -0.29 16 47 H 0.15 0.08 5.41 -52.49 -0.28 -0.20 16 48 H 0.14 -0.09 8.06 -52.49 -0.42 -0.51 16 49 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 50 H 0.38 -1.69 8.74 45.56 0.40 -1.30 16 51 H 0.15 0.15 4.87 -52.49 -0.26 -0.11 16 52 H 0.14 0.01 8.06 -52.48 -0.42 -0.41 16 LS Contribution 413.60 15.07 6.23 6.23 Total: 0.00 -5.99 413.60 -10.14 -16.13 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: -7.86 Total: -10.81 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.02 Total: 0.20 kcal Atomic # 7 Polarization: -2.82 SS G_CDS: -0.18 Total: -3.01 kcal Atomic # 8 Polarization: -0.49 SS G_CDS: -0.62 Total: -1.11 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: -5.68 Total: -7.63 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -5.99 -10.14 -16.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17313438_13915762.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.465 kcal (2) G-P(sol) polarization free energy of solvation -5.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds