Wall clock time and date at job start Mon Mar 8 2021 09:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46699 * 2 1 4 4 C 1.52994 * 109.47170 * 239.99892 * 2 1 3 5 5 Si 1.86304 * 109.47173 * 119.99474 * 2 1 3 6 6 C 1.86305 * 109.46721 * 60.00155 * 5 2 1 7 7 C 1.86296 * 109.47312 * 300.00491 * 5 2 1 8 8 O 1.63092 * 109.47220 * 179.97438 * 5 2 1 9 9 C 1.35897 * 114.00425 * 180.02562 * 8 5 2 10 10 C 1.38778 * 120.02214 * 269.73092 * 9 8 5 11 11 C 1.38215 * 120.09577 * 179.74109 * 10 9 8 12 12 C 1.38107 * 120.13087 * 0.55102 * 11 10 9 13 13 C 1.38986 * 120.03137 * 359.70229 * 12 11 10 14 14 N 1.39744 * 120.04278 * 179.97438 * 13 12 11 15 15 C 1.38687 * 120.00316 * 330.14908 * 14 13 12 16 16 N 1.29692 * 124.95019 * 354.25236 * 15 14 13 17 17 C 1.32078 * 116.87956 * 179.77295 * 16 15 14 18 18 C 1.33363 * 114.57560 * 0.51839 * 17 16 15 19 19 C 1.50701 * 125.95444 * 179.75597 * 18 17 16 20 20 O 1.42905 * 109.46907 * 299.99554 * 19 18 17 21 21 Si 1.86300 * 109.47184 * 179.97438 * 19 18 17 22 22 H 1.48503 * 109.47277 * 59.99687 * 21 19 18 23 23 H 1.48497 * 109.47366 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46995 * 299.99735 * 21 19 18 25 25 S 1.70968 * 124.94880 * 174.55724 * 15 14 13 26 26 C 1.38611 * 120.01856 * 90.00016 * 9 8 5 27 27 H 1.09004 * 109.47183 * 299.99915 * 1 2 3 28 28 H 1.08999 * 109.47373 * 60.00317 * 1 2 3 29 29 H 1.09005 * 109.47084 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47081 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47156 * 299.99484 * 3 2 1 32 32 H 1.09004 * 109.47234 * 60.00116 * 3 2 1 33 33 H 1.09003 * 109.47202 * 299.99406 * 4 2 1 34 34 H 1.08995 * 109.47414 * 60.00070 * 4 2 1 35 35 H 1.09007 * 109.46941 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47607 * 299.99872 * 6 5 2 37 37 H 1.08999 * 109.46791 * 179.97438 * 6 5 2 38 38 H 1.09008 * 109.46724 * 60.00307 * 6 5 2 39 39 H 1.08995 * 109.47312 * 179.97438 * 7 5 2 40 40 H 1.08999 * 109.47477 * 299.99897 * 7 5 2 41 41 H 1.09007 * 109.47174 * 59.99978 * 7 5 2 42 42 H 1.08005 * 119.94690 * 359.97438 * 10 9 8 43 43 H 1.08002 * 119.93953 * 180.25175 * 11 10 9 44 44 H 1.08003 * 119.98614 * 179.71951 * 12 11 10 45 45 H 0.97004 * 120.00123 * 150.15062 * 14 13 12 46 46 H 1.07991 * 122.71516 * 180.24900 * 17 16 15 47 47 H 1.08989 * 109.47735 * 59.99428 * 19 18 17 48 48 H 0.96707 * 114.00012 * 300.00293 * 20 19 18 49 49 H 1.08006 * 120.06080 * 0.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8781 1.5212 6 6 1.5300 -2.6346 1.5213 7 6 1.5300 0.0001 3.0423 8 8 3.7820 -0.8787 1.5209 9 6 4.3348 -1.4998 2.5958 10 6 4.6229 -0.7756 3.7440 11 6 5.1802 -1.4069 4.8400 12 6 5.4628 -2.7579 4.7924 13 6 5.1813 -3.4874 3.6434 14 7 5.4676 -4.8543 3.5948 15 6 6.5228 -5.3685 4.3335 16 7 7.3680 -4.6591 5.0149 17 6 8.3113 -5.3161 5.6653 18 6 8.2668 -6.6408 5.5181 19 6 9.2170 -7.6324 6.1385 20 8 10.5473 -7.3602 5.6931 21 14 8.7324 -9.3582 5.6308 22 1 8.7921 -9.4741 4.1515 23 1 9.6690 -10.3353 6.2416 24 1 7.3501 -9.6407 6.0941 25 16 6.9031 -7.0295 4.4727 26 6 4.6164 -2.8561 2.5440 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 0.4400 -2.6347 1.5213 37 1 1.8937 -3.1485 2.4111 38 1 1.8935 -3.1484 0.6313 39 1 1.8929 -0.5139 3.9323 40 1 1.8932 1.0278 3.0423 41 1 0.4399 0.0000 3.0423 42 1 4.4078 0.2821 3.7825 43 1 5.3997 -0.8416 5.7337 44 1 5.9025 -3.2479 5.6486 45 1 4.9284 -5.4435 3.0443 46 1 9.0607 -4.8203 6.2643 47 1 9.1729 -7.5477 7.2242 48 1 10.6606 -7.4177 4.7344 49 1 4.3972 -3.4203 1.6495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17313438_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:36 Heat of formation + Delta-G solvation = -42.209488 kcal Electronic energy + Delta-G solvation = -28271.462515 eV Core-core repulsion = 24448.969457 eV Total energy + Delta-G solvation = -3822.493058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.42560 -40.50264 -38.55904 -37.70177 -36.92755 -36.04248 -32.04577 -30.90273 -30.18118 -29.32012 -29.10140 -27.94016 -27.45271 -26.87346 -24.96740 -23.67190 -23.22198 -21.11129 -20.46632 -20.01139 -19.02747 -18.05717 -17.50136 -17.26352 -16.77304 -16.57295 -16.30431 -16.15276 -16.07540 -15.67394 -15.47496 -15.27417 -14.93941 -14.82398 -14.60647 -14.39171 -14.09901 -13.90380 -13.64986 -13.47591 -13.34620 -13.21346 -12.99998 -12.98911 -12.97444 -12.78609 -12.49263 -12.44115 -12.41481 -12.31541 -12.05187 -11.97875 -11.82758 -11.72106 -11.66696 -10.84498 -10.58476 -10.33616 -10.28588 -10.17193 -9.97640 -9.43520 -8.57193 -0.35489 -0.17021 0.31870 0.50583 0.52121 1.05067 1.32584 1.33213 1.41032 1.61198 1.82907 1.87649 1.90949 1.94215 2.33239 2.86707 3.35397 3.52252 3.83792 3.94270 4.03435 4.03965 4.17353 4.25559 4.35715 4.41488 4.48177 4.53925 4.61588 4.62648 4.64523 4.65063 4.70010 4.72201 4.74832 4.78859 4.93018 5.03339 5.03747 5.04982 5.12960 5.19188 5.27576 5.35214 5.37271 5.40865 5.47313 5.48485 5.55354 5.58490 5.84731 5.94510 6.22806 6.43857 6.84160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.372 4.372 3 C -0.136 4.136 4 C -0.136 4.136 5 Si 1.281 2.719 6 C -0.506 4.506 7 C -0.506 4.506 8 O -0.560 6.560 9 C 0.154 3.846 10 C -0.175 4.175 11 C -0.072 4.072 12 C -0.140 4.140 13 C 0.186 3.814 14 N -0.630 5.630 15 C 0.310 3.690 16 N -0.529 5.529 17 C 0.116 3.884 18 C -0.297 4.297 19 C -0.024 4.024 20 O -0.534 6.534 21 Si 0.897 3.103 22 H -0.237 1.237 23 H -0.228 1.228 24 H -0.236 1.236 25 S 0.096 5.904 26 C -0.192 4.192 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.142 0.858 45 H 0.425 0.575 46 H 0.183 0.817 47 H 0.127 0.873 48 H 0.378 0.622 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -1.875 0.068 2.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.416 4.416 3 C -0.193 4.193 4 C -0.193 4.193 5 Si 1.415 2.585 6 C -0.609 4.609 7 C -0.609 4.609 8 O -0.513 6.513 9 C 0.110 3.890 10 C -0.194 4.194 11 C -0.091 4.091 12 C -0.161 4.161 13 C 0.089 3.911 14 N -0.261 5.261 15 C -0.059 4.059 16 N -0.252 5.252 17 C -0.035 4.035 18 C -0.420 4.420 19 C -0.138 4.138 20 O -0.339 6.339 21 Si 0.717 3.283 22 H -0.160 1.160 23 H -0.151 1.151 24 H -0.159 1.159 25 S 0.347 5.653 26 C -0.214 4.214 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.160 0.840 45 H 0.264 0.736 46 H 0.200 0.800 47 H 0.145 0.855 48 H 0.225 0.775 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.539 -2.840 -0.091 3.810 hybrid contribution -0.080 0.624 -0.322 0.707 sum -2.618 -2.216 -0.414 3.455 Atomic orbital electron populations 1.21560 0.93659 1.01866 1.02330 1.25743 1.00402 1.03159 1.12336 1.21538 1.01178 0.94582 1.02033 1.21536 1.01148 0.99781 0.96842 0.77009 0.50180 0.65784 0.65541 1.26996 1.07242 1.21954 1.04697 1.26989 1.07152 1.09221 1.17544 1.83800 1.47659 1.75311 1.44577 1.17626 0.96604 0.89425 0.85362 1.21286 1.04419 1.00956 0.92766 1.20890 0.96241 0.93914 0.98011 1.21189 1.02746 0.94571 0.97600 1.17375 0.97818 0.82341 0.93583 1.41376 1.30005 1.06862 1.47867 1.23549 0.92617 0.93199 0.96520 1.66623 1.06548 1.36959 1.15085 1.21447 0.95570 0.89463 0.96994 1.25767 1.05317 0.99421 1.11450 1.24095 0.82618 1.04788 1.02291 1.86538 1.25664 1.93633 1.28071 0.86285 0.82546 0.76856 0.82571 1.15992 1.15055 1.15861 1.84129 1.27637 1.05275 1.48285 1.20811 1.08392 0.94132 0.98067 0.92385 0.92301 0.92447 0.92153 0.92555 0.92525 0.92614 0.92551 0.92185 0.90442 0.91038 0.90851 0.90860 0.90712 0.90517 0.84991 0.84983 0.84003 0.73649 0.80047 0.85505 0.77462 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.13 7.85 37.16 0.29 0.42 16 2 C -0.37 0.17 0.53 -90.62 -0.05 0.12 16 3 C -0.14 0.01 7.85 37.16 0.29 0.31 16 4 C -0.14 0.02 7.85 37.15 0.29 0.32 16 5 Si 1.28 -0.96 8.27 -169.99 -1.41 -2.36 16 6 C -0.51 0.43 8.31 101.05 0.84 1.27 16 7 C -0.51 0.27 8.32 101.05 0.84 1.11 16 8 O -0.56 -0.75 8.52 -19.42 -0.17 -0.92 16 9 C 0.15 0.26 4.63 -39.24 -0.18 0.08 16 10 C -0.17 -0.21 8.80 -39.39 -0.35 -0.56 16 11 C -0.07 -0.07 10.03 -39.64 -0.40 -0.47 16 12 C -0.14 -0.27 8.77 -39.35 -0.35 -0.61 16 13 C 0.19 0.27 6.40 -83.77 -0.54 -0.26 16 14 N -0.63 -0.08 5.50 -11.65 -0.06 -0.15 16 15 C 0.31 0.40 7.77 -87.60 -0.68 -0.28 16 16 N -0.53 -1.29 7.76 -15.19 -0.12 -1.41 16 17 C 0.12 0.12 11.22 -19.15 -0.21 -0.10 16 18 C -0.30 -0.01 5.75 -36.01 -0.21 -0.22 16 19 C -0.02 0.03 2.99 36.01 0.11 0.13 16 20 O -0.53 0.24 12.87 -35.23 -0.45 -0.21 16 21 Si 0.90 -0.88 26.34 -169.99 -4.48 -5.36 16 22 H -0.24 0.15 7.11 56.52 0.40 0.55 16 23 H -0.23 0.00 7.11 56.52 0.40 0.40 16 24 H -0.24 0.09 7.11 56.52 0.40 0.49 16 25 S 0.10 -0.01 20.57 -107.50 -2.21 -2.22 16 26 C -0.19 -0.22 8.67 -39.24 -0.34 -0.56 16 27 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 28 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 30 H 0.06 0.01 7.97 -51.92 -0.41 -0.40 16 31 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.06 -0.04 7.79 -51.93 -0.40 -0.45 16 33 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 34 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 35 H 0.06 0.01 7.97 -51.92 -0.41 -0.40 16 36 H 0.08 -0.10 7.79 -51.93 -0.40 -0.51 16 37 H 0.07 -0.05 7.37 -51.93 -0.38 -0.43 16 38 H 0.07 -0.08 7.79 -51.92 -0.40 -0.48 16 39 H 0.07 -0.02 7.40 -51.93 -0.38 -0.40 16 40 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 41 H 0.08 -0.08 7.79 -51.92 -0.40 -0.49 16 42 H 0.13 -0.01 8.06 -52.48 -0.42 -0.44 16 43 H 0.13 -0.12 8.06 -52.49 -0.42 -0.55 16 44 H 0.14 0.34 6.15 -52.48 -0.32 0.02 16 45 H 0.42 -1.09 8.92 -40.82 -0.36 -1.46 16 46 H 0.18 -0.07 8.06 -52.49 -0.42 -0.49 16 47 H 0.13 -0.28 7.96 -51.94 -0.41 -0.70 16 48 H 0.38 -1.25 8.70 45.56 0.40 -0.86 16 49 H 0.13 -0.06 8.06 -52.48 -0.42 -0.48 16 LS Contribution 408.29 15.07 6.15 6.15 Total: 0.00 -5.40 408.29 -10.67 -16.07 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -7.29 Total: -10.28 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.64 Total: 0.69 kcal Atomic # 7 Polarization: -1.38 SS G_CDS: -0.18 Total: -1.56 kcal Atomic # 8 Polarization: -0.51 SS G_CDS: -0.62 Total: -1.13 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: -5.88 Total: -7.72 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -5.40 -10.67 -16.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17313438_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.140 kcal (2) G-P(sol) polarization free energy of solvation -5.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds