Wall clock time and date at job start Mon Mar 8 2021 09:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46699 * 2 1 4 4 C 1.52994 * 109.47170 * 239.99892 * 2 1 3 5 5 Si 1.86304 * 109.47173 * 119.99474 * 2 1 3 6 6 C 1.86305 * 109.46721 * 60.00155 * 5 2 1 7 7 C 1.86296 * 109.47312 * 300.00491 * 5 2 1 8 8 O 1.63092 * 109.47220 * 179.97438 * 5 2 1 9 9 C 1.35897 * 114.00425 * 180.02562 * 8 5 2 10 10 C 1.38778 * 120.02214 * 269.73092 * 9 8 5 11 11 C 1.38215 * 120.09577 * 179.74109 * 10 9 8 12 12 C 1.38107 * 120.13087 * 0.55102 * 11 10 9 13 13 C 1.38986 * 120.03137 * 359.70229 * 12 11 10 14 14 N 1.39744 * 120.04278 * 179.97438 * 13 12 11 15 15 C 1.38687 * 120.00316 * 330.14908 * 14 13 12 16 16 N 1.29692 * 124.95019 * 354.25236 * 15 14 13 17 17 C 1.32078 * 116.87956 * 179.77295 * 16 15 14 18 18 C 1.33363 * 114.57560 * 0.51839 * 17 16 15 19 19 C 1.50701 * 125.95444 * 179.75597 * 18 17 16 20 20 O 1.42905 * 109.46907 * 299.99554 * 19 18 17 21 21 Si 1.86300 * 109.47184 * 179.97438 * 19 18 17 22 22 H 1.48503 * 109.47277 * 59.99687 * 21 19 18 23 23 H 1.48497 * 109.47366 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46995 * 299.99735 * 21 19 18 25 25 S 1.70968 * 124.94880 * 174.55724 * 15 14 13 26 26 C 1.38611 * 120.01856 * 90.00016 * 9 8 5 27 27 H 1.09004 * 109.47183 * 299.99915 * 1 2 3 28 28 H 1.08999 * 109.47373 * 60.00317 * 1 2 3 29 29 H 1.09005 * 109.47084 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47081 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47156 * 299.99484 * 3 2 1 32 32 H 1.09004 * 109.47234 * 60.00116 * 3 2 1 33 33 H 1.09003 * 109.47202 * 299.99406 * 4 2 1 34 34 H 1.08995 * 109.47414 * 60.00070 * 4 2 1 35 35 H 1.09007 * 109.46941 * 179.97438 * 4 2 1 36 36 H 1.08997 * 109.47607 * 299.99872 * 6 5 2 37 37 H 1.08999 * 109.46791 * 179.97438 * 6 5 2 38 38 H 1.09008 * 109.46724 * 60.00307 * 6 5 2 39 39 H 1.08995 * 109.47312 * 179.97438 * 7 5 2 40 40 H 1.08999 * 109.47477 * 299.99897 * 7 5 2 41 41 H 1.09007 * 109.47174 * 59.99978 * 7 5 2 42 42 H 1.08005 * 119.94690 * 359.97438 * 10 9 8 43 43 H 1.08002 * 119.93953 * 180.25175 * 11 10 9 44 44 H 1.08003 * 119.98614 * 179.71951 * 12 11 10 45 45 H 0.97004 * 120.00123 * 150.15062 * 14 13 12 46 46 H 1.07991 * 122.71516 * 180.24900 * 17 16 15 47 47 H 1.08989 * 109.47735 * 59.99428 * 19 18 17 48 48 H 0.96707 * 114.00012 * 300.00293 * 20 19 18 49 49 H 1.08006 * 120.06080 * 0.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1510 -0.8781 1.5212 6 6 1.5300 -2.6346 1.5213 7 6 1.5300 0.0001 3.0423 8 8 3.7820 -0.8787 1.5209 9 6 4.3348 -1.4998 2.5958 10 6 4.6229 -0.7756 3.7440 11 6 5.1802 -1.4069 4.8400 12 6 5.4628 -2.7579 4.7924 13 6 5.1813 -3.4874 3.6434 14 7 5.4676 -4.8543 3.5948 15 6 6.5228 -5.3685 4.3335 16 7 7.3680 -4.6591 5.0149 17 6 8.3113 -5.3161 5.6653 18 6 8.2668 -6.6408 5.5181 19 6 9.2170 -7.6324 6.1385 20 8 10.5473 -7.3602 5.6931 21 14 8.7324 -9.3582 5.6308 22 1 8.7921 -9.4741 4.1515 23 1 9.6690 -10.3353 6.2416 24 1 7.3501 -9.6407 6.0941 25 16 6.9031 -7.0295 4.4727 26 6 4.6164 -2.8561 2.5440 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6768 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7208 -1.2494 36 1 0.4400 -2.6347 1.5213 37 1 1.8937 -3.1485 2.4111 38 1 1.8935 -3.1484 0.6313 39 1 1.8929 -0.5139 3.9323 40 1 1.8932 1.0278 3.0423 41 1 0.4399 0.0000 3.0423 42 1 4.4078 0.2821 3.7825 43 1 5.3997 -0.8416 5.7337 44 1 5.9025 -3.2479 5.6486 45 1 4.9284 -5.4435 3.0443 46 1 9.0607 -4.8203 6.2643 47 1 9.1729 -7.5477 7.2242 48 1 10.6606 -7.4177 4.7344 49 1 4.3972 -3.4203 1.6495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17313438_15704118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:35 Heat of formation + Delta-G solvation = -33.300227 kcal Electronic energy + Delta-G solvation = -28271.076180 eV Core-core repulsion = 24448.969457 eV Total energy + Delta-G solvation = -3822.106723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.135 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.46286 -40.54016 -38.56534 -37.67403 -36.87860 -36.06608 -32.06477 -30.92521 -30.21960 -29.25661 -29.05430 -27.86737 -27.41452 -26.87021 -24.97563 -23.71215 -23.26085 -21.12356 -20.43129 -20.02537 -19.03051 -18.05378 -17.50740 -17.30978 -16.77431 -16.58538 -16.30238 -16.13758 -16.04091 -15.67804 -15.47918 -15.26527 -14.88303 -14.78939 -14.61938 -14.35900 -14.03980 -13.89215 -13.65431 -13.41910 -13.30430 -13.17997 -12.97176 -12.96498 -12.93141 -12.82502 -12.44441 -12.41788 -12.37629 -12.29851 -12.03602 -11.94009 -11.82633 -11.67376 -11.63471 -10.83098 -10.54207 -10.35764 -10.27693 -10.12611 -10.01087 -9.49548 -8.59963 -0.38723 -0.18253 0.26593 0.46048 0.51809 1.11904 1.35296 1.39359 1.46454 1.67198 1.85378 1.88888 1.92676 2.00887 2.37840 2.80750 3.43220 3.57156 3.88997 3.92957 4.07105 4.09258 4.14406 4.21877 4.32233 4.44696 4.51840 4.58048 4.61110 4.63152 4.72714 4.73750 4.75926 4.78583 4.80987 4.82045 4.98315 5.04482 5.07538 5.07778 5.16330 5.18712 5.32431 5.35793 5.38584 5.42162 5.44773 5.51272 5.56383 5.61720 5.80090 5.98507 6.18506 6.65078 6.84154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.375 4.375 3 C -0.140 4.140 4 C -0.140 4.140 5 Si 1.298 2.702 6 C -0.509 4.509 7 C -0.512 4.512 8 O -0.572 6.572 9 C 0.146 3.854 10 C -0.184 4.184 11 C -0.073 4.073 12 C -0.154 4.154 13 C 0.182 3.818 14 N -0.626 5.626 15 C 0.297 3.703 16 N -0.552 5.552 17 C 0.103 3.897 18 C -0.294 4.294 19 C -0.020 4.020 20 O -0.546 6.546 21 Si 0.920 3.080 22 H -0.241 1.241 23 H -0.242 1.242 24 H -0.243 1.243 25 S 0.117 5.883 26 C -0.197 4.197 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.134 0.866 45 H 0.436 0.564 46 H 0.190 0.810 47 H 0.139 0.861 48 H 0.389 0.611 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -2.295 0.090 3.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.418 4.418 3 C -0.198 4.198 4 C -0.197 4.197 5 Si 1.432 2.568 6 C -0.613 4.613 7 C -0.614 4.614 8 O -0.525 6.525 9 C 0.102 3.898 10 C -0.203 4.203 11 C -0.092 4.092 12 C -0.175 4.175 13 C 0.084 3.916 14 N -0.258 5.258 15 C -0.072 4.072 16 N -0.276 5.276 17 C -0.048 4.048 18 C -0.416 4.416 19 C -0.134 4.134 20 O -0.353 6.353 21 Si 0.742 3.258 22 H -0.164 1.164 23 H -0.165 1.165 24 H -0.166 1.166 25 S 0.367 5.633 26 C -0.219 4.219 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.152 0.848 45 H 0.276 0.724 46 H 0.207 0.793 47 H 0.156 0.844 48 H 0.238 0.762 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.907 -3.263 -0.090 4.371 hybrid contribution 0.055 0.741 -0.340 0.817 sum -2.852 -2.522 -0.430 3.831 Atomic orbital electron populations 1.21614 0.93215 1.02521 1.02512 1.25792 1.00840 1.02842 1.12374 1.21583 1.00864 0.95057 1.02249 1.21578 1.00835 1.00358 0.96925 0.76722 0.49306 0.65721 0.65046 1.27008 1.07753 1.21700 1.04797 1.27038 1.07673 1.09259 1.17470 1.83798 1.48674 1.75448 1.44604 1.17795 0.96732 0.89757 0.85566 1.21457 1.04565 1.01533 0.92791 1.21090 0.95758 0.93768 0.98592 1.21241 1.03481 0.95110 0.97709 1.17467 0.97699 0.82902 0.93566 1.41380 1.29896 1.06667 1.47834 1.23715 0.92822 0.93916 0.96731 1.66619 1.07214 1.37987 1.15751 1.21608 0.95804 0.89926 0.97446 1.25951 1.05299 0.99387 1.10986 1.24149 0.82162 1.04140 1.02938 1.86513 1.25842 1.93614 1.29320 0.85963 0.81550 0.76355 0.81941 1.16420 1.16476 1.16633 1.84020 1.27327 1.04055 1.47893 1.20938 1.08341 0.94181 0.98435 0.91664 0.92716 0.91591 0.92722 0.92856 0.91834 0.91763 0.92876 0.92749 0.89754 0.91189 0.90532 0.91196 0.90674 0.89839 0.84037 0.83446 0.84790 0.72363 0.79312 0.84361 0.76151 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.32 7.85 71.98 0.56 0.89 16 2 C -0.37 0.34 0.53 -10.80 -0.01 0.34 16 3 C -0.14 -0.02 7.85 71.98 0.56 0.55 16 4 C -0.14 0.03 7.85 71.98 0.56 0.59 16 5 Si 1.30 -2.04 8.27 68.60 0.57 -1.48 16 6 C -0.51 1.10 8.31 113.37 0.94 2.04 16 7 C -0.51 0.63 8.32 113.37 0.94 1.57 16 8 O -0.57 -1.70 8.52 -92.39 -0.79 -2.49 16 9 C 0.15 0.54 4.63 22.49 0.10 0.64 16 10 C -0.18 -0.52 8.80 22.39 0.20 -0.32 16 11 C -0.07 -0.18 10.03 22.23 0.22 0.04 16 12 C -0.15 -0.72 8.77 22.42 0.20 -0.52 16 13 C 0.18 0.63 6.40 38.19 0.24 0.87 16 14 N -0.63 -0.39 5.50 -190.76 -1.05 -1.44 16 15 C 0.30 0.88 7.77 179.29 1.39 2.28 16 16 N -0.55 -3.07 7.76 -201.97 -1.57 -4.63 16 17 C 0.10 0.25 11.22 83.55 0.94 1.18 16 18 C -0.29 0.00 5.75 24.58 0.14 0.14 16 19 C -0.02 0.05 2.99 71.24 0.21 0.27 16 20 O -0.55 0.72 12.87 -148.98 -1.92 -1.20 16 21 Si 0.92 -2.04 26.34 68.60 1.81 -0.24 16 22 H -0.24 0.40 7.11 99.48 0.71 1.10 16 23 H -0.24 -0.01 7.11 99.48 0.71 0.70 16 24 H -0.24 0.25 7.11 99.48 0.71 0.96 16 25 S 0.12 -0.03 20.57 -56.49 -1.16 -1.19 16 26 C -0.20 -0.50 8.67 22.49 0.20 -0.31 16 27 H 0.06 -0.25 7.79 -2.38 -0.02 -0.26 16 28 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.07 -0.26 7.79 -2.38 -0.02 -0.28 16 30 H 0.05 0.06 7.97 -2.38 -0.02 0.04 16 31 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 -0.10 7.79 -2.38 -0.02 -0.11 16 33 H 0.06 -0.14 7.79 -2.39 -0.02 -0.15 16 34 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.05 0.05 7.97 -2.38 -0.02 0.03 16 36 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 37 H 0.07 -0.11 7.37 -2.39 -0.02 -0.13 16 38 H 0.08 -0.21 7.79 -2.38 -0.02 -0.23 16 39 H 0.07 -0.03 7.40 -2.39 -0.02 -0.04 16 40 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 41 H 0.08 -0.23 7.79 -2.38 -0.02 -0.25 16 42 H 0.14 0.01 8.06 -2.91 -0.02 -0.02 16 43 H 0.15 -0.24 8.06 -2.91 -0.02 -0.26 16 44 H 0.13 0.81 6.15 -2.91 -0.02 0.79 16 45 H 0.44 -2.19 8.92 -92.71 -0.83 -3.02 16 46 H 0.19 -0.05 8.06 -2.92 -0.02 -0.07 16 47 H 0.14 -0.70 7.96 -2.39 -0.02 -0.72 16 48 H 0.39 -2.72 8.70 -74.05 -0.64 -3.36 16 49 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 Total: 0.00 -11.94 408.29 3.55 -8.39 By element: Atomic # 1 Polarization: -6.21 SS G_CDS: 0.24 Total: -5.97 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 7.42 Total: 10.25 kcal Atomic # 7 Polarization: -3.46 SS G_CDS: -2.62 Total: -6.08 kcal Atomic # 8 Polarization: -0.98 SS G_CDS: -2.70 Total: -3.69 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: 2.37 Total: -1.71 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.16 Total: -1.19 kcal Total: -11.94 3.55 -8.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17313438_15704118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.910 kcal (2) G-P(sol) polarization free energy of solvation -11.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds