Wall clock time and date at job start Mon Mar 8 2021 09:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33354 * 125.95284 * 2 1 4 4 C 1.50691 * 122.71442 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47015 * 329.99447 * 4 3 2 6 6 Si 1.86305 * 109.47298 * 209.99907 * 4 3 2 7 7 H 1.48505 * 109.47009 * 59.99644 * 6 4 3 8 8 H 1.48502 * 109.47282 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46906 * 299.99609 * 6 4 3 10 10 N 1.32078 * 114.57754 * 179.70796 * 3 2 1 11 11 C 1.29700 * 116.87554 * 0.51600 * 10 3 2 12 12 N 1.38685 * 124.95155 * 179.77228 * 11 10 3 13 13 C 1.39748 * 120.00112 * 173.63467 * 12 11 10 14 14 C 1.38945 * 120.04421 * 141.54095 * 13 12 11 15 15 C 1.38155 * 120.03123 * 180.02562 * 14 13 12 16 16 C 1.38187 * 120.12918 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.09288 * 359.97438 * 16 15 14 18 18 O 1.35900 * 120.01666 * 179.97438 * 17 16 15 19 19 Si 1.63099 * 114.00181 * 89.99546 * 18 17 16 20 20 C 1.86293 * 109.47237 * 300.00291 * 19 18 17 21 21 C 1.86302 * 109.46849 * 60.00373 * 19 18 17 22 22 C 1.86300 * 109.47333 * 180.02562 * 19 18 17 23 23 C 1.52999 * 109.47251 * 180.02562 * 22 19 18 24 24 C 1.53004 * 109.47273 * 300.00252 * 22 19 18 25 25 C 1.53006 * 109.46943 * 59.99771 * 22 19 18 26 26 C 1.38573 * 119.96781 * 0.25236 * 17 16 15 27 27 S 1.70972 * 110.09940 * 359.50955 * 11 10 3 28 28 H 1.09000 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46922 * 299.99899 * 1 2 3 30 30 H 1.09002 * 109.46775 * 59.99995 * 1 2 3 31 31 H 1.08998 * 109.47955 * 89.99706 * 4 3 2 32 32 H 0.96698 * 114.00481 * 300.00007 * 5 4 3 33 33 H 0.96998 * 120.00048 * 353.63656 * 12 11 10 34 34 H 1.07993 * 119.98616 * 0.02562 * 14 13 12 35 35 H 1.07999 * 119.93589 * 179.97438 * 15 14 13 36 36 H 1.07998 * 119.94972 * 179.97438 * 16 15 14 37 37 H 1.08999 * 109.47161 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47243 * 59.99664 * 20 19 18 39 39 H 1.08999 * 109.47166 * 299.99703 * 20 19 18 40 40 H 1.08999 * 109.47045 * 299.99431 * 21 19 18 41 41 H 1.08996 * 109.47202 * 59.99926 * 21 19 18 42 42 H 1.08999 * 109.46841 * 179.97438 * 21 19 18 43 43 H 1.08999 * 109.47096 * 59.99965 * 23 22 19 44 44 H 1.08998 * 109.46737 * 180.02562 * 23 22 19 45 45 H 1.09004 * 109.46878 * 299.99810 * 23 22 19 46 46 H 1.08999 * 109.47071 * 59.99578 * 24 22 19 47 47 H 1.08999 * 109.47678 * 179.97438 * 24 22 19 48 48 H 1.08999 * 109.47080 * 300.00039 * 24 22 19 49 49 H 1.08996 * 109.46763 * 60.00331 * 25 22 19 50 50 H 1.09004 * 109.46852 * 180.02562 * 25 22 19 51 51 H 1.08999 * 109.47285 * 300.00351 * 25 22 19 52 52 H 1.08006 * 120.06272 * 179.74976 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2900 1.0795 0.0000 4 6 1.7418 2.4832 0.0006 5 8 0.4815 2.5026 -0.6727 6 14 2.9325 3.6153 -0.8778 7 1 3.1122 3.1545 -2.2781 8 1 2.3920 4.9984 -0.8778 9 1 4.2423 3.5952 -0.1781 10 7 3.5849 0.8190 0.0061 11 6 3.9315 -0.4308 0.0009 12 7 5.2392 -0.8926 0.0014 13 6 5.4973 -2.2600 0.1296 14 6 6.5248 -2.8454 -0.6000 15 6 6.7794 -4.1974 -0.4735 16 6 6.0134 -4.9708 0.3778 17 6 4.9856 -4.3914 1.1091 18 8 4.2329 -5.1536 1.9455 19 14 4.8159 -5.2438 3.4660 20 6 6.5240 -5.9867 3.4331 21 6 4.8961 -3.5345 4.2027 22 6 3.6938 -6.3138 4.4989 23 6 4.2404 -6.3980 5.9254 24 6 2.2907 -5.7043 4.5260 25 6 3.6284 -7.7175 3.8935 26 6 4.7238 -3.0366 0.9817 27 16 2.5414 -1.4261 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6099 2.8215 1.0283 32 1 0.5234 2.2130 -1.5944 33 1 5.9747 -0.2664 -0.0872 34 1 7.1247 -2.2433 -1.2662 35 1 7.5781 -4.6509 -1.0416 36 1 6.2147 -6.0275 0.4742 37 1 6.9134 -6.0474 4.4493 38 1 7.1808 -5.3610 2.8286 39 1 6.4770 -6.9867 3.0021 40 1 5.5529 -2.9089 3.5984 41 1 3.8968 -3.0999 4.2220 42 1 5.2853 -3.5949 5.2191 43 1 4.2867 -5.3978 6.3564 44 1 3.5841 -7.0243 6.5296 45 1 5.2401 -6.8320 5.9064 46 1 1.9011 -5.6440 3.5098 47 1 1.6341 -6.3305 5.1299 48 1 2.3373 -4.7043 4.9572 49 1 4.6280 -8.1517 3.8743 50 1 2.9715 -8.3434 4.4976 51 1 3.2388 -7.6572 2.8774 52 1 3.9219 -2.5850 1.5470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17313438_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:49 Heat of formation + Delta-G solvation = -49.189820 kcal Electronic energy + Delta-G solvation = -31202.530787 eV Core-core repulsion = 27224.197421 eV Total energy + Delta-G solvation = -3978.333367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 380.150 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.43969 -40.92226 -38.75744 -37.65071 -36.94954 -36.13027 -32.93187 -31.35174 -30.54609 -29.40574 -29.23819 -28.88381 -27.96012 -27.46277 -25.70438 -25.06982 -23.65907 -23.05035 -20.88255 -20.52758 -19.77761 -18.62876 -17.91676 -17.76666 -17.39226 -16.89521 -16.77644 -16.45525 -16.26151 -15.86675 -15.75795 -15.37480 -14.96929 -14.86699 -14.81704 -14.64603 -14.33285 -14.13034 -13.87411 -13.83916 -13.66696 -13.51681 -13.47110 -13.40625 -13.29562 -13.02473 -13.00849 -12.84771 -12.77203 -12.52376 -12.44140 -12.23142 -12.13067 -12.03453 -11.80486 -11.75281 -11.72560 -11.56864 -10.71654 -10.63970 -10.39080 -10.20642 -10.10245 -9.88010 -9.57977 -8.55762 -0.29765 0.02031 0.12672 0.34669 0.78814 1.20251 1.25659 1.55806 1.63097 1.70490 1.76602 1.85424 1.87836 2.17913 2.24601 2.65809 3.32099 3.48874 3.76259 3.88015 4.01533 4.01905 4.04047 4.13063 4.15855 4.31383 4.33048 4.38798 4.46442 4.58239 4.61540 4.63115 4.65278 4.67422 4.73416 4.77215 4.79989 4.83324 4.91435 4.99434 5.01731 5.02144 5.08314 5.10094 5.16279 5.24916 5.26620 5.29970 5.32631 5.34975 5.38117 5.45902 5.52277 5.62016 6.01463 6.11606 6.45169 6.85332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.236 4.236 3 C 0.053 3.947 4 C -0.046 4.046 5 O -0.534 6.534 6 Si 0.981 3.019 7 H -0.260 1.260 8 H -0.261 1.261 9 H -0.246 1.246 10 N -0.529 5.529 11 C 0.293 3.707 12 N -0.634 5.634 13 C 0.183 3.817 14 C -0.160 4.160 15 C -0.062 4.062 16 C -0.174 4.174 17 C 0.168 3.832 18 O -0.558 6.558 19 Si 1.279 2.721 20 C -0.506 4.506 21 C -0.507 4.507 22 C -0.371 4.371 23 C -0.137 4.137 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.201 4.201 27 S 0.143 5.857 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.376 0.624 33 H 0.424 0.576 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.060 0.940 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -2.532 -0.162 3.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.358 4.358 3 C -0.077 4.077 4 C -0.159 4.159 5 O -0.338 6.338 6 Si 0.802 3.198 7 H -0.184 1.184 8 H -0.185 1.185 9 H -0.169 1.169 10 N -0.253 5.253 11 C -0.076 4.076 12 N -0.266 5.266 13 C 0.086 3.914 14 C -0.182 4.182 15 C -0.081 4.081 16 C -0.193 4.193 17 C 0.124 3.876 18 O -0.511 6.511 19 Si 1.414 2.586 20 C -0.609 4.609 21 C -0.610 4.610 22 C -0.415 4.415 23 C -0.195 4.195 24 C -0.194 4.194 25 C -0.193 4.193 26 C -0.224 4.224 27 S 0.394 5.606 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.224 0.776 33 H 0.264 0.736 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.079 0.921 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.962 -2.613 -0.155 3.271 hybrid contribution 0.224 0.530 0.163 0.599 sum 2.187 -2.082 0.008 3.019 Atomic orbital electron populations 1.20202 0.86095 1.01897 1.03971 1.25545 1.01904 0.93796 1.14537 1.20135 0.86496 0.97532 1.03530 1.24469 0.92545 0.95069 1.03772 1.86537 1.28838 1.89532 1.28884 0.85172 0.78072 0.77031 0.79511 1.18372 1.18489 1.16891 1.65902 1.17703 1.16709 1.25010 1.23194 0.91337 0.92042 1.01036 1.41132 1.02992 1.05474 1.77040 1.17390 0.96888 0.81938 0.95152 1.20942 1.00679 0.95602 1.00943 1.20894 0.98203 0.92638 0.96375 1.21351 0.96494 1.01405 1.00089 1.17689 0.89620 0.87972 0.92361 1.83807 1.58750 1.67826 1.40750 0.77049 0.63089 0.65828 0.52628 1.26979 1.20838 1.08001 1.05045 1.27008 1.04944 1.20881 1.08173 1.25724 1.05984 1.05320 1.04478 1.21562 1.00975 1.02008 0.94913 1.21546 0.95218 1.00446 1.02184 1.21542 1.01897 0.95044 1.00848 1.21146 1.04750 0.93787 1.02669 1.84495 0.95211 1.08755 1.72138 0.92171 0.90257 0.89763 0.85764 0.77609 0.73614 0.84875 0.84442 0.84508 0.90372 0.90887 0.90633 0.91091 0.90800 0.90335 0.92410 0.92227 0.92386 0.92137 0.92468 0.92566 0.92529 0.92492 0.92138 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.01 8.91 36.01 0.32 0.33 16 2 C -0.24 -0.42 6.50 -36.01 -0.23 -0.65 16 3 C 0.05 0.13 5.91 -84.20 -0.50 -0.37 16 4 C -0.05 -0.04 2.94 36.00 0.11 0.07 16 5 O -0.53 -0.01 10.18 -35.23 -0.36 -0.36 16 6 Si 0.98 1.40 27.37 -169.99 -4.65 -3.26 16 7 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 8 H -0.26 -0.53 7.11 56.52 0.40 -0.13 16 9 H -0.25 -0.74 7.11 56.52 0.40 -0.34 16 10 N -0.53 -1.86 8.95 -11.34 -0.10 -1.96 16 11 C 0.29 0.75 7.94 -87.60 -0.70 0.05 16 12 N -0.63 -0.48 5.48 -11.64 -0.06 -0.54 16 13 C 0.18 0.09 6.16 -83.76 -0.52 -0.43 16 14 C -0.16 0.16 9.97 -39.35 -0.39 -0.24 16 15 C -0.06 0.09 10.03 -39.63 -0.40 -0.31 16 16 C -0.17 0.08 8.77 -39.39 -0.35 -0.27 16 17 C 0.17 0.13 4.63 -39.25 -0.18 -0.05 16 18 O -0.56 -0.39 8.52 -19.43 -0.17 -0.56 16 19 Si 1.28 -1.23 8.27 -169.99 -1.41 -2.63 16 20 C -0.51 0.56 8.31 101.05 0.84 1.40 16 21 C -0.51 0.12 8.32 101.05 0.84 0.96 16 22 C -0.37 0.26 0.53 -90.62 -0.05 0.21 16 23 C -0.14 0.15 7.85 37.16 0.29 0.44 16 24 C -0.14 0.04 7.85 37.16 0.29 0.33 16 25 C -0.14 0.08 7.85 37.16 0.29 0.37 16 26 C -0.20 -0.22 6.93 -39.23 -0.27 -0.49 16 27 S 0.14 0.25 19.54 -107.50 -2.10 -1.85 16 28 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.08 -0.10 6.40 -51.93 -0.33 -0.43 16 31 H 0.12 0.01 7.96 -51.93 -0.41 -0.41 16 32 H 0.38 -1.04 8.13 45.56 0.37 -0.67 16 33 H 0.42 -0.34 8.95 -40.82 -0.37 -0.70 16 34 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16 35 H 0.14 -0.51 8.06 -52.49 -0.42 -0.93 16 36 H 0.14 -0.25 8.06 -52.49 -0.42 -0.67 16 37 H 0.08 -0.12 7.79 -51.93 -0.40 -0.52 16 38 H 0.07 -0.07 7.38 -51.93 -0.38 -0.46 16 39 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 40 H 0.07 0.02 7.39 -51.93 -0.38 -0.37 16 41 H 0.07 0.00 7.79 -51.93 -0.40 -0.41 16 42 H 0.08 -0.07 7.79 -51.93 -0.40 -0.47 16 43 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 44 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 45 H 0.06 -0.10 7.79 -51.93 -0.40 -0.51 16 46 H 0.06 -0.01 7.97 -51.93 -0.41 -0.42 16 47 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 48 H 0.06 -0.04 7.80 -51.93 -0.40 -0.45 16 49 H 0.06 -0.07 7.79 -51.93 -0.40 -0.48 16 50 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 51 H 0.06 -0.02 7.97 -51.93 -0.41 -0.44 16 52 H 0.14 0.19 6.11 -51.94 -0.32 -0.13 16 LS Contribution 424.47 15.07 6.40 6.40 Total: 0.00 -5.44 424.47 -11.12 -16.56 By element: Atomic # 1 Polarization: -5.10 SS G_CDS: -8.07 Total: -13.16 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.60 Total: 1.37 kcal Atomic # 7 Polarization: -2.33 SS G_CDS: -0.17 Total: -2.50 kcal Atomic # 8 Polarization: -0.40 SS G_CDS: -0.52 Total: -0.92 kcal Atomic # 14 Polarization: 0.17 SS G_CDS: -6.06 Total: -5.89 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -2.10 Total: -1.85 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -5.44 -11.12 -16.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17313438_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.633 kcal (2) G-P(sol) polarization free energy of solvation -5.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds