Wall clock time and date at job start Mon Mar 8 2021 09:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.33354 * 125.95284 * 2 1 4 4 C 1.50691 * 122.71442 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47015 * 329.99447 * 4 3 2 6 6 Si 1.86305 * 109.47298 * 209.99907 * 4 3 2 7 7 H 1.48505 * 109.47009 * 59.99644 * 6 4 3 8 8 H 1.48502 * 109.47282 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46906 * 299.99609 * 6 4 3 10 10 N 1.32078 * 114.57754 * 179.70796 * 3 2 1 11 11 C 1.29700 * 116.87554 * 0.51600 * 10 3 2 12 12 N 1.38685 * 124.95155 * 179.77228 * 11 10 3 13 13 C 1.39748 * 120.00112 * 173.63467 * 12 11 10 14 14 C 1.38945 * 120.04421 * 141.54095 * 13 12 11 15 15 C 1.38155 * 120.03123 * 180.02562 * 14 13 12 16 16 C 1.38187 * 120.12918 * 0.02562 * 15 14 13 17 17 C 1.38809 * 120.09288 * 359.97438 * 16 15 14 18 18 O 1.35900 * 120.01666 * 179.97438 * 17 16 15 19 19 Si 1.63099 * 114.00181 * 89.99546 * 18 17 16 20 20 C 1.86293 * 109.47237 * 300.00291 * 19 18 17 21 21 C 1.86302 * 109.46849 * 60.00373 * 19 18 17 22 22 C 1.86300 * 109.47333 * 180.02562 * 19 18 17 23 23 C 1.52999 * 109.47251 * 180.02562 * 22 19 18 24 24 C 1.53004 * 109.47273 * 300.00252 * 22 19 18 25 25 C 1.53006 * 109.46943 * 59.99771 * 22 19 18 26 26 C 1.38573 * 119.96781 * 0.25236 * 17 16 15 27 27 S 1.70972 * 110.09940 * 359.50955 * 11 10 3 28 28 H 1.09000 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46922 * 299.99899 * 1 2 3 30 30 H 1.09002 * 109.46775 * 59.99995 * 1 2 3 31 31 H 1.08998 * 109.47955 * 89.99706 * 4 3 2 32 32 H 0.96698 * 114.00481 * 300.00007 * 5 4 3 33 33 H 0.96998 * 120.00048 * 353.63656 * 12 11 10 34 34 H 1.07993 * 119.98616 * 0.02562 * 14 13 12 35 35 H 1.07999 * 119.93589 * 179.97438 * 15 14 13 36 36 H 1.07998 * 119.94972 * 179.97438 * 16 15 14 37 37 H 1.08999 * 109.47161 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47243 * 59.99664 * 20 19 18 39 39 H 1.08999 * 109.47166 * 299.99703 * 20 19 18 40 40 H 1.08999 * 109.47045 * 299.99431 * 21 19 18 41 41 H 1.08996 * 109.47202 * 59.99926 * 21 19 18 42 42 H 1.08999 * 109.46841 * 179.97438 * 21 19 18 43 43 H 1.08999 * 109.47096 * 59.99965 * 23 22 19 44 44 H 1.08998 * 109.46737 * 180.02562 * 23 22 19 45 45 H 1.09004 * 109.46878 * 299.99810 * 23 22 19 46 46 H 1.08999 * 109.47071 * 59.99578 * 24 22 19 47 47 H 1.08999 * 109.47678 * 179.97438 * 24 22 19 48 48 H 1.08999 * 109.47080 * 300.00039 * 24 22 19 49 49 H 1.08996 * 109.46763 * 60.00331 * 25 22 19 50 50 H 1.09004 * 109.46852 * 180.02562 * 25 22 19 51 51 H 1.08999 * 109.47285 * 300.00351 * 25 22 19 52 52 H 1.08006 * 120.06272 * 179.74976 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2900 1.0795 0.0000 4 6 1.7418 2.4832 0.0006 5 8 0.4815 2.5026 -0.6727 6 14 2.9325 3.6153 -0.8778 7 1 3.1122 3.1545 -2.2781 8 1 2.3920 4.9984 -0.8778 9 1 4.2423 3.5952 -0.1781 10 7 3.5849 0.8190 0.0061 11 6 3.9315 -0.4308 0.0009 12 7 5.2392 -0.8926 0.0014 13 6 5.4973 -2.2600 0.1296 14 6 6.5248 -2.8454 -0.6000 15 6 6.7794 -4.1974 -0.4735 16 6 6.0134 -4.9708 0.3778 17 6 4.9856 -4.3914 1.1091 18 8 4.2329 -5.1536 1.9455 19 14 4.8159 -5.2438 3.4660 20 6 6.5240 -5.9867 3.4331 21 6 4.8961 -3.5345 4.2027 22 6 3.6938 -6.3138 4.4989 23 6 4.2404 -6.3980 5.9254 24 6 2.2907 -5.7043 4.5260 25 6 3.6284 -7.7175 3.8935 26 6 4.7238 -3.0366 0.9817 27 16 2.5414 -1.4261 0.0006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6099 2.8215 1.0283 32 1 0.5234 2.2130 -1.5944 33 1 5.9747 -0.2664 -0.0872 34 1 7.1247 -2.2433 -1.2662 35 1 7.5781 -4.6509 -1.0416 36 1 6.2147 -6.0275 0.4742 37 1 6.9134 -6.0474 4.4493 38 1 7.1808 -5.3610 2.8286 39 1 6.4770 -6.9867 3.0021 40 1 5.5529 -2.9089 3.5984 41 1 3.8968 -3.0999 4.2220 42 1 5.2853 -3.5949 5.2191 43 1 4.2867 -5.3978 6.3564 44 1 3.5841 -7.0243 6.5296 45 1 5.2401 -6.8320 5.9064 46 1 1.9011 -5.6440 3.5098 47 1 1.6341 -6.3305 5.1299 48 1 2.3373 -4.7043 4.9572 49 1 4.6280 -8.1517 3.8743 50 1 2.9715 -8.3434 4.4976 51 1 3.2388 -7.6572 2.8774 52 1 3.9219 -2.5850 1.5470 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17313438_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:07:48 Heat of formation + Delta-G solvation = -39.656760 kcal Electronic energy + Delta-G solvation = -31202.117403 eV Core-core repulsion = 27224.197421 eV Total energy + Delta-G solvation = -3977.919982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 380.150 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.46935 -40.96383 -38.76180 -37.66380 -36.88867 -36.11922 -32.97611 -31.31828 -30.52256 -29.34737 -29.22069 -28.88051 -27.88175 -27.41658 -25.75605 -25.13500 -23.62490 -23.04400 -20.92871 -20.50172 -19.79935 -18.68000 -17.95805 -17.79441 -17.35005 -16.90038 -16.79723 -16.48227 -16.23073 -15.96725 -15.74235 -15.40544 -14.90667 -14.86576 -14.79127 -14.67532 -14.31725 -14.06656 -13.89373 -13.82686 -13.65374 -13.47469 -13.45347 -13.35744 -13.23133 -12.98189 -12.94896 -12.84012 -12.72759 -12.49956 -12.42505 -12.28605 -12.21137 -12.09277 -11.88864 -11.69607 -11.68282 -11.57573 -10.84034 -10.59582 -10.46538 -10.20538 -10.14783 -9.90187 -9.56150 -8.60824 -0.37492 -0.03187 0.12616 0.33561 0.69294 1.14062 1.28134 1.47119 1.58022 1.63379 1.69153 1.73007 1.95631 2.03401 2.31065 2.70808 3.28163 3.48602 3.82890 3.93117 4.07834 4.08307 4.08461 4.12570 4.25256 4.27174 4.40365 4.44502 4.53262 4.54874 4.64166 4.66419 4.75405 4.76771 4.78604 4.80054 4.82102 4.84951 4.97690 5.00203 5.06969 5.07598 5.10471 5.16735 5.24281 5.30274 5.32028 5.35231 5.38088 5.41915 5.42776 5.51817 5.60293 5.61559 6.05245 6.11830 6.55186 6.77140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.239 4.239 3 C 0.039 3.961 4 C -0.037 4.037 5 O -0.536 6.536 6 Si 1.012 2.988 7 H -0.273 1.273 8 H -0.267 1.267 9 H -0.271 1.271 10 N -0.551 5.551 11 C 0.284 3.716 12 N -0.630 5.630 13 C 0.170 3.830 14 C -0.159 4.159 15 C -0.059 4.059 16 C -0.178 4.178 17 C 0.155 3.845 18 O -0.569 6.569 19 Si 1.299 2.701 20 C -0.507 4.507 21 C -0.516 4.516 22 C -0.373 4.373 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.213 4.213 27 S 0.143 5.857 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.389 0.611 33 H 0.429 0.571 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.053 0.947 51 H 0.056 0.944 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 -3.284 -0.558 3.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.361 4.361 3 C -0.091 4.091 4 C -0.151 4.151 5 O -0.342 6.342 6 Si 0.837 3.163 7 H -0.198 1.198 8 H -0.192 1.192 9 H -0.196 1.196 10 N -0.276 5.276 11 C -0.085 4.085 12 N -0.263 5.263 13 C 0.074 3.926 14 C -0.180 4.180 15 C -0.078 4.078 16 C -0.198 4.198 17 C 0.111 3.889 18 O -0.523 6.523 19 Si 1.433 2.567 20 C -0.611 4.611 21 C -0.617 4.617 22 C -0.417 4.417 23 C -0.199 4.199 24 C -0.198 4.198 25 C -0.197 4.197 26 C -0.236 4.236 27 S 0.394 5.606 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.238 0.762 33 H 0.270 0.730 34 H 0.169 0.831 35 H 0.182 0.818 36 H 0.168 0.832 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.075 0.925 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.491 -3.358 -0.556 4.218 hybrid contribution 0.083 0.742 0.272 0.795 sum 2.574 -2.616 -0.284 3.682 Atomic orbital electron populations 1.20268 0.84824 1.02444 1.04506 1.25802 1.02751 0.93519 1.14044 1.20384 0.86386 0.98359 1.03973 1.24369 0.92528 0.94013 1.04145 1.86513 1.28205 1.89522 1.29946 0.84725 0.76763 0.76554 0.78263 1.19778 1.19194 1.19611 1.65927 1.18432 1.17285 1.25999 1.23405 0.92130 0.92039 1.00960 1.41180 1.02592 1.05854 1.76696 1.17555 0.97565 0.81718 0.95738 1.21207 1.00088 0.96125 1.00579 1.21236 0.98344 0.92317 0.95859 1.21600 0.96089 1.02261 0.99813 1.17855 0.90236 0.87928 0.92901 1.83802 1.59312 1.67829 1.41339 0.76709 0.63187 0.64900 0.51868 1.26960 1.20305 1.08265 1.05527 1.27129 1.04417 1.21609 1.08578 1.25766 1.05697 1.05329 1.04909 1.21619 1.01436 1.02331 0.94546 1.21588 0.95679 1.00665 1.01886 1.21580 1.02413 0.95097 1.00576 1.21151 1.04975 0.94244 1.03235 1.84454 0.95117 1.08870 1.72130 0.91634 0.90297 0.88505 0.85037 0.76188 0.73016 0.83092 0.81769 0.83153 0.89788 0.90855 0.90041 0.91802 0.91441 0.89756 0.91997 0.92588 0.91399 0.92585 0.92673 0.92318 0.91545 0.92821 0.92480 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.02 8.91 71.24 0.63 0.66 16 2 C -0.24 -0.97 6.50 24.58 0.16 -0.81 16 3 C 0.04 0.22 5.91 41.41 0.24 0.46 16 4 C -0.04 -0.08 2.94 71.23 0.21 0.13 16 5 O -0.54 0.19 10.18 -148.98 -1.52 -1.33 16 6 Si 1.01 3.76 27.37 68.60 1.88 5.64 16 7 H -0.27 -1.53 7.11 99.48 0.71 -0.82 16 8 H -0.27 -1.21 7.11 99.48 0.71 -0.50 16 9 H -0.27 -2.11 7.11 99.48 0.71 -1.40 16 10 N -0.55 -4.52 8.95 -189.80 -1.70 -6.22 16 11 C 0.28 1.78 7.94 179.29 1.42 3.20 16 12 N -0.63 -1.53 5.48 -190.75 -1.04 -2.58 16 13 C 0.17 0.24 6.16 38.19 0.24 0.48 16 14 C -0.16 0.41 9.97 22.42 0.22 0.64 16 15 C -0.06 0.25 10.03 22.24 0.22 0.47 16 16 C -0.18 0.28 8.77 22.39 0.20 0.48 16 17 C 0.16 0.30 4.63 22.49 0.10 0.41 16 18 O -0.57 -1.15 8.52 -92.43 -0.79 -1.94 16 19 Si 1.30 -2.07 8.27 68.60 0.57 -1.51 16 20 C -0.51 1.47 8.31 113.37 0.94 2.41 16 21 C -0.52 -0.26 8.32 113.37 0.94 0.68 16 22 C -0.37 0.40 0.53 -10.79 -0.01 0.39 16 23 C -0.14 0.31 7.85 71.98 0.56 0.88 16 24 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 25 C -0.14 0.14 7.85 71.98 0.56 0.71 16 26 C -0.21 -0.67 6.93 22.49 0.16 -0.52 16 27 S 0.14 0.66 19.54 -56.49 -1.10 -0.45 16 28 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.10 -0.30 6.40 -2.39 -0.02 -0.31 16 31 H 0.13 0.04 7.96 -2.39 -0.02 0.02 16 32 H 0.39 -2.34 8.13 -74.06 -0.60 -2.94 16 33 H 0.43 -0.28 8.95 -92.71 -0.83 -1.10 16 34 H 0.15 -1.00 8.06 -2.91 -0.02 -1.03 16 35 H 0.16 -1.61 8.06 -2.91 -0.02 -1.64 16 36 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 37 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 38 H 0.07 -0.20 7.38 -2.38 -0.02 -0.21 16 39 H 0.08 -0.32 7.79 -2.39 -0.02 -0.34 16 40 H 0.06 0.12 7.39 -2.39 -0.02 0.10 16 41 H 0.07 0.10 7.79 -2.39 -0.02 0.08 16 42 H 0.08 -0.10 7.79 -2.39 -0.02 -0.12 16 43 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 44 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.07 -0.28 7.79 -2.38 -0.02 -0.30 16 46 H 0.06 0.06 7.97 -2.39 -0.02 0.04 16 47 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.06 -0.03 7.80 -2.39 -0.02 -0.05 16 49 H 0.07 -0.21 7.79 -2.39 -0.02 -0.23 16 50 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 51 H 0.06 -0.02 7.97 -2.39 -0.02 -0.04 16 52 H 0.13 0.59 6.11 -3.25 -0.02 0.57 16 Total: 0.00 -12.91 424.47 3.92 -8.99 By element: Atomic # 1 Polarization: -12.04 SS G_CDS: 0.25 Total: -11.80 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 7.38 Total: 11.19 kcal Atomic # 7 Polarization: -6.06 SS G_CDS: -2.74 Total: -8.80 kcal Atomic # 8 Polarization: -0.96 SS G_CDS: -2.30 Total: -3.27 kcal Atomic # 14 Polarization: 1.69 SS G_CDS: 2.45 Total: 4.13 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -1.10 Total: -0.45 kcal Total: -12.91 3.92 -8.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17313438_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.668 kcal (2) G-P(sol) polarization free energy of solvation -12.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds