Wall clock time and date at job start Mon Mar 8 2021 09:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47432 * 2 1 4 4 C 1.53005 * 109.46690 * 240.00094 * 2 1 3 5 5 Si 1.86298 * 109.47052 * 120.00468 * 2 1 3 6 6 C 1.86294 * 109.47313 * 299.99561 * 5 2 1 7 7 C 1.86302 * 109.46942 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47625 * 59.99938 * 5 2 1 9 9 C 1.35892 * 114.00441 * 179.97438 * 8 5 2 10 10 C 1.38776 * 120.01754 * 89.99661 * 9 8 5 11 11 C 1.38220 * 120.09641 * 179.97438 * 10 9 8 12 12 C 1.38112 * 120.12688 * 0.02996 * 11 10 9 13 13 C 1.38979 * 120.03580 * 0.22297 * 12 11 10 14 14 N 1.39739 * 120.04428 * 179.74658 * 13 12 11 15 15 C 1.39215 * 120.00365 * 322.59715 * 14 13 12 16 16 C 1.39301 * 119.71639 * 174.32337 * 15 14 13 17 17 F 1.35094 * 120.47394 * 0.02562 * 16 15 14 18 18 C 1.38503 * 119.05414 * 179.97438 * 16 15 14 19 19 C 1.38850 * 118.48594 * 359.97438 * 18 16 15 20 20 C 1.50700 * 120.32806 * 179.97438 * 19 18 16 21 21 O 1.42900 * 109.46864 * 299.99924 * 20 19 18 22 22 Si 1.86303 * 109.47211 * 180.02562 * 20 19 18 23 23 H 1.48494 * 109.46914 * 180.02562 * 22 20 19 24 24 H 1.48506 * 109.46737 * 299.99677 * 22 20 19 25 25 H 1.48491 * 109.47218 * 59.99778 * 22 20 19 26 26 C 1.38054 * 119.34501 * 0.02562 * 19 18 16 27 27 N 1.31959 * 120.89892 * 359.72585 * 26 19 18 28 28 C 1.38611 * 120.02181 * 269.97441 * 9 8 5 29 29 H 1.09003 * 109.46851 * 299.99663 * 1 2 3 30 30 H 1.09003 * 109.47037 * 59.99798 * 1 2 3 31 31 H 1.09000 * 109.47502 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47231 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47161 * 300.00163 * 3 2 1 34 34 H 1.09003 * 109.46828 * 60.00322 * 3 2 1 35 35 H 1.08993 * 109.47598 * 299.99727 * 4 2 1 36 36 H 1.08993 * 109.47263 * 60.00229 * 4 2 1 37 37 H 1.09002 * 109.46955 * 180.02562 * 4 2 1 38 38 H 1.08993 * 109.47507 * 180.02562 * 6 5 2 39 39 H 1.09002 * 109.47358 * 300.00423 * 6 5 2 40 40 H 1.08996 * 109.47272 * 59.99843 * 6 5 2 41 41 H 1.08999 * 109.47420 * 299.99558 * 7 5 2 42 42 H 1.09000 * 109.47255 * 59.99876 * 7 5 2 43 43 H 1.09003 * 109.46928 * 179.97438 * 7 5 2 44 44 H 1.08004 * 119.95369 * 0.02562 * 10 9 8 45 45 H 1.08001 * 119.93590 * 179.97438 * 11 10 9 46 46 H 1.08004 * 119.97939 * 179.97438 * 12 11 10 47 47 H 0.97003 * 119.99634 * 142.59920 * 14 13 12 48 48 H 1.07999 * 120.75642 * 179.97438 * 18 16 15 49 49 H 1.09000 * 109.47200 * 59.99940 * 20 19 18 50 50 H 0.96705 * 113.99722 * 179.97438 * 21 20 19 51 51 H 1.08002 * 119.54845 * 180.02562 * 26 19 18 52 52 H 1.08004 * 120.06386 * 0.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6074 -2.4160 1.5211 9 6 2.0088 -3.1443 2.5958 10 6 1.2330 -3.1695 3.7463 11 6 1.6395 -3.9102 4.8402 12 6 2.8191 -4.6270 4.7925 13 6 3.6028 -4.6013 3.6450 14 7 4.7989 -5.3222 3.5985 15 6 5.6060 -5.4056 4.7297 16 6 6.7351 -6.2213 4.7139 17 9 7.0521 -6.9310 3.6090 18 6 7.5286 -6.2936 5.8468 19 6 7.1652 -5.5456 6.9587 20 6 7.9983 -5.5936 8.2135 21 8 8.0429 -6.9348 8.7046 22 14 7.2405 -4.4850 9.5049 23 1 8.0619 -4.5319 10.7411 24 1 7.1937 -3.0911 8.9948 25 1 5.8625 -4.9479 9.8077 26 6 6.0325 -4.7583 6.9037 27 7 5.2971 -4.7045 5.8093 28 6 3.1930 -3.8627 2.5436 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 1.8938 -0.5138 3.9321 39 1 1.8934 1.0275 3.0423 40 1 0.4402 -0.0001 3.0423 41 1 4.3770 -1.3931 0.6307 42 1 4.3777 0.1485 1.5205 43 1 4.3773 -1.3925 2.4108 44 1 0.3099 -2.6103 3.7866 45 1 1.0340 -3.9276 5.7343 46 1 3.1346 -5.2045 5.6489 47 1 5.0669 -5.7646 2.7778 48 1 8.4099 -6.9176 5.8649 49 1 9.0100 -5.2543 7.9912 50 1 8.5638 -7.0408 9.5125 51 1 5.7470 -4.1749 7.7665 52 1 3.7981 -3.8442 1.6491 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17313438_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:11:52 Heat of formation + Delta-G solvation = -83.117033 kcal Electronic energy + Delta-G solvation = -32724.310622 eV Core-core repulsion = 28341.437458 eV Total energy + Delta-G solvation = -4382.873164 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 378.169 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.07081 -41.79698 -40.80689 -38.64131 -37.64558 -36.88815 -36.14848 -33.52770 -32.36873 -30.98103 -29.98203 -29.27923 -29.04690 -27.87813 -27.42346 -26.67375 -25.28273 -23.67167 -23.28168 -22.54560 -20.53480 -19.65463 -19.40787 -18.55567 -18.10125 -17.93974 -17.33410 -17.17347 -17.00768 -16.58430 -16.30938 -16.13793 -15.83595 -15.69216 -15.12684 -15.03587 -14.88843 -14.79470 -14.62141 -14.58441 -14.26912 -14.04081 -13.98590 -13.87121 -13.59249 -13.45078 -13.31419 -13.19846 -12.97563 -12.94494 -12.70507 -12.61994 -12.43624 -12.30899 -12.05039 -12.02815 -11.98923 -11.86069 -11.68273 -11.64842 -10.88258 -10.80170 -10.56180 -10.30592 -10.13962 -10.00923 -9.50129 -8.64075 -0.32338 -0.08384 0.26317 0.46502 1.17662 1.29064 1.49086 1.56400 1.66267 1.77251 1.95278 1.97379 2.33997 2.40491 2.81389 2.87895 3.12050 3.34839 3.62747 3.75129 3.92046 4.03676 4.06669 4.08562 4.13276 4.21781 4.29713 4.34725 4.36227 4.45137 4.53387 4.61650 4.67937 4.68700 4.70744 4.75720 4.77127 4.80458 4.81667 4.91711 4.97726 5.06940 5.07330 5.14053 5.17637 5.29329 5.32619 5.35608 5.38169 5.41911 5.45706 5.49725 5.53474 5.60170 5.86297 6.02012 6.18406 6.77623 6.85268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.372 4.372 3 C -0.142 4.142 4 C -0.140 4.140 5 Si 1.300 2.700 6 C -0.510 4.510 7 C -0.512 4.512 8 O -0.570 6.570 9 C 0.143 3.857 10 C -0.180 4.180 11 C -0.074 4.074 12 C -0.144 4.144 13 C 0.180 3.820 14 N -0.658 5.658 15 C 0.362 3.638 16 C -0.016 4.016 17 F -0.134 7.134 18 C -0.037 4.037 19 C -0.152 4.152 20 C -0.068 4.068 21 O -0.563 6.563 22 Si 0.966 3.034 23 H -0.250 1.250 24 H -0.253 1.253 25 H -0.265 1.265 26 C 0.128 3.872 27 N -0.510 5.510 28 C -0.196 4.196 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.144 0.856 45 H 0.152 0.848 46 H 0.128 0.872 47 H 0.428 0.572 48 H 0.169 0.831 49 H 0.105 0.895 50 H 0.401 0.599 51 H 0.173 0.827 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 1.710 3.548 4.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.417 4.417 3 C -0.199 4.199 4 C -0.197 4.197 5 Si 1.434 2.566 6 C -0.613 4.613 7 C -0.614 4.614 8 O -0.524 6.524 9 C 0.099 3.901 10 C -0.200 4.200 11 C -0.092 4.092 12 C -0.165 4.165 13 C 0.084 3.916 14 N -0.285 5.285 15 C 0.127 3.873 16 C -0.041 4.041 17 F -0.113 7.113 18 C -0.063 4.063 19 C -0.156 4.156 20 C -0.179 4.179 21 O -0.372 6.372 22 Si 0.789 3.211 23 H -0.174 1.174 24 H -0.177 1.177 25 H -0.189 1.189 26 C -0.030 4.030 27 N -0.225 5.225 28 C -0.217 4.217 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.162 0.838 45 H 0.169 0.831 46 H 0.145 0.855 47 H 0.268 0.732 48 H 0.186 0.814 49 H 0.123 0.877 50 H 0.252 0.748 51 H 0.189 0.811 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.112 2.519 3.443 4.409 hybrid contribution 1.565 -0.795 -0.640 1.868 sum 2.677 1.724 2.803 4.242 Atomic orbital electron populations 1.21580 0.93849 1.01914 1.02354 1.25752 1.00691 1.03092 1.12120 1.21614 1.01327 0.94318 1.02629 1.21579 1.01114 1.00017 0.97010 0.76695 0.62895 0.51662 0.65359 1.27008 1.07298 1.09713 1.17261 1.27074 1.24888 1.05129 1.04302 1.83788 1.78023 1.45912 1.44695 1.17820 0.92292 0.94333 0.85686 1.21462 1.01987 1.03971 0.92548 1.21109 0.95269 0.94322 0.98539 1.21116 0.94599 1.02542 0.98211 1.17417 0.85716 0.93386 0.95058 1.41909 1.19916 1.54768 1.11883 1.18466 0.88435 0.91639 0.88738 1.18064 0.98974 1.00448 0.86660 1.91494 1.92589 1.76583 1.50646 1.21509 0.99034 0.96396 0.89368 1.20224 0.98099 1.00918 0.96385 1.24549 1.03578 0.91679 0.98092 1.86453 1.76886 1.25677 1.48208 0.85456 0.80040 0.77810 0.77762 1.17362 1.17684 1.18921 1.22694 0.89541 0.95717 0.95016 1.67464 1.32639 1.22723 0.99669 1.21028 0.98810 1.01639 1.00268 0.91720 0.92742 0.92610 0.91835 0.92547 0.91557 0.92665 0.92687 0.92062 0.91290 0.89829 0.90332 0.90906 0.89858 0.91930 0.83777 0.83067 0.85454 0.73207 0.81370 0.87732 0.74776 0.81084 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.05 7.85 71.98 0.56 0.52 16 2 C -0.37 0.02 0.53 -10.79 -0.01 0.02 16 3 C -0.14 0.20 7.85 71.98 0.56 0.76 16 4 C -0.14 -0.11 7.85 71.98 0.56 0.45 16 5 Si 1.30 -0.03 8.27 68.60 0.57 0.54 16 6 C -0.51 0.10 8.31 113.37 0.94 1.05 16 7 C -0.51 -0.58 8.31 113.37 0.94 0.36 16 8 O -0.57 -2.29 8.52 -92.33 -0.79 -3.08 16 9 C 0.14 0.69 4.63 22.49 0.10 0.80 16 10 C -0.18 -0.56 8.77 22.39 0.20 -0.36 16 11 C -0.07 -0.18 10.03 22.24 0.22 0.04 16 12 C -0.14 -0.74 8.57 22.42 0.19 -0.55 16 13 C 0.18 0.98 6.21 38.19 0.24 1.22 16 14 N -0.66 -2.74 5.47 -185.31 -1.01 -3.75 16 15 C 0.36 2.02 7.18 133.04 0.96 2.98 16 16 C -0.02 -0.07 7.35 22.59 0.17 0.10 16 17 F -0.13 -0.64 16.66 44.97 0.75 0.10 16 18 C -0.04 -0.05 9.75 22.48 0.22 0.17 16 19 C -0.15 -0.05 5.43 -19.76 -0.11 -0.16 16 20 C -0.07 0.33 2.83 71.24 0.20 0.53 16 21 O -0.56 2.12 12.75 -148.98 -1.90 0.22 16 22 Si 0.97 -4.52 25.10 68.60 1.72 -2.80 16 23 H -0.25 1.20 7.11 99.48 0.71 1.90 16 24 H -0.25 0.88 7.11 99.48 0.71 1.58 16 25 H -0.26 0.29 7.11 99.48 0.71 0.99 16 26 C 0.13 0.29 9.84 84.63 0.83 1.12 16 27 N -0.51 -2.97 7.42 -192.96 -1.43 -4.40 16 28 C -0.20 -0.94 8.69 22.49 0.20 -0.74 16 29 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 30 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.05 0.07 7.97 -2.39 -0.02 0.05 16 32 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 33 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 35 H 0.05 0.09 7.96 -2.39 -0.02 0.07 16 36 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.06 -0.03 7.79 -2.39 -0.02 -0.05 16 38 H 0.07 0.07 7.38 -2.39 -0.02 0.05 16 39 H 0.08 -0.14 7.79 -2.39 -0.02 -0.16 16 40 H 0.08 -0.08 7.79 -2.39 -0.02 -0.10 16 41 H 0.07 0.06 7.79 -2.39 -0.02 0.05 16 42 H 0.08 -0.04 7.79 -2.39 -0.02 -0.06 16 43 H 0.06 0.20 7.38 -2.39 -0.02 0.19 16 44 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16 45 H 0.15 -0.35 8.06 -2.91 -0.02 -0.38 16 46 H 0.13 0.74 6.62 -2.91 -0.02 0.72 16 47 H 0.43 0.39 8.31 -92.71 -0.77 -0.38 16 48 H 0.17 -0.38 8.06 -2.91 -0.02 -0.40 16 49 H 0.10 -0.99 7.96 -2.39 -0.02 -1.01 16 50 H 0.40 -5.05 8.74 -74.05 -0.65 -5.70 16 51 H 0.17 -0.23 4.88 -2.91 -0.01 -0.24 16 52 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 Total: 0.00 -13.16 421.67 5.17 -7.99 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: 0.28 Total: -3.13 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 6.99 Total: 8.31 kcal Atomic # 7 Polarization: -5.71 SS G_CDS: -2.45 Total: -8.16 kcal Atomic # 8 Polarization: -0.17 SS G_CDS: -2.69 Total: -2.86 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 0.75 Total: 0.10 kcal Atomic # 14 Polarization: -4.55 SS G_CDS: 2.29 Total: -2.26 kcal Total: -13.16 5.17 -7.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17313438_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.127 kcal (2) G-P(sol) polarization free energy of solvation -13.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds