Wall clock time and date at job start Mon Mar 8 2021 09:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00214 * 2 1 4 4 C 1.53003 * 112.84831 * 66.01539 * 3 2 1 5 5 F 1.39899 * 109.47289 * 283.56568 * 4 3 2 6 6 F 1.39904 * 109.46712 * 43.57007 * 4 3 2 7 7 F 1.39908 * 109.46837 * 163.56416 * 4 3 2 8 8 C 1.53778 * 113.61202 * 294.82322 * 3 2 1 9 9 C 1.53777 * 87.08337 * 270.79709 * 8 3 2 10 10 H 1.08999 * 113.62328 * 219.93997 * 9 8 3 11 11 C 1.53005 * 113.61156 * 89.11363 * 9 8 3 12 12 N 1.46501 * 109.46851 * 175.00277 * 11 9 8 13 13 C 1.38614 * 120.00029 * 180.02562 * 12 11 9 14 14 N 1.29689 * 124.94538 * 359.70291 * 13 12 11 15 15 C 1.32122 * 116.86315 * 179.81380 * 14 13 12 16 16 C 1.33323 * 114.57920 * 0.46689 * 15 14 13 17 17 C 1.50703 * 125.95112 * 179.75516 * 16 15 14 18 18 O 1.42894 * 109.47046 * 65.02733 * 17 16 15 19 19 Si 1.86308 * 109.46899 * 185.02456 * 17 16 15 20 20 S 1.70962 * 124.95071 * 180.02562 * 13 12 11 21 21 C 1.53784 * 87.08320 * 334.56993 * 9 8 3 22 22 H 1.09002 * 109.46851 * 62.48271 * 1 2 3 23 23 H 1.08998 * 109.47197 * 182.48138 * 1 2 3 24 24 H 1.09003 * 109.46834 * 302.48444 * 1 2 3 25 25 H 1.09009 * 113.61190 * 156.25390 * 8 3 2 26 26 H 1.09000 * 113.69637 * 25.35870 * 8 3 2 27 27 H 1.08995 * 109.47260 * 295.00487 * 11 9 8 28 28 H 1.09002 * 109.47068 * 55.00940 * 11 9 8 29 29 H 0.97001 * 120.00339 * 0.02562 * 12 11 9 30 30 H 1.07997 * 122.70984 * 180.22514 * 15 14 13 31 31 H 1.08995 * 109.47267 * 305.02419 * 17 16 15 32 32 H 0.96700 * 114.00120 * 180.02562 * 18 17 16 33 33 H 1.48499 * 110.00208 * 299.99748 * 19 17 16 34 34 H 1.48496 * 109.99850 * 61.31936 * 19 17 16 35 35 H 1.08997 * 113.61740 * 139.97395 * 21 9 8 36 36 H 1.09001 * 113.61622 * 270.88599 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7284 2.0813 1.2882 5 9 0.4117 2.5537 1.2695 6 9 1.9053 1.2366 2.3894 7 9 2.6107 3.1629 1.3837 8 6 1.7205 2.1087 -1.2789 9 6 2.9972 1.4845 -1.8662 10 1 3.5925 2.1813 -2.4563 11 6 2.7553 0.1547 -2.5832 12 7 4.0014 -0.2975 -3.2069 13 6 4.0285 -1.4868 -3.9184 14 7 3.0123 -2.2746 -4.0875 15 6 3.2171 -3.3688 -4.7992 16 6 4.4655 -3.5159 -5.2433 17 6 4.9807 -4.6655 -6.0704 18 8 4.3346 -4.6624 -7.3450 19 14 6.8200 -4.4858 -6.3061 20 16 5.4083 -2.1327 -4.6943 21 6 3.4900 1.3229 -0.4185 22 1 -0.3633 0.4748 -0.9114 23 1 -0.3633 -1.0267 0.0445 24 1 -0.3633 0.5520 0.8669 25 1 1.7859 3.1881 -1.1407 26 1 0.8088 1.8021 -1.7916 27 1 2.4183 -0.5905 -1.8627 28 1 1.9929 0.2890 -3.3505 29 1 4.8075 0.2353 -3.1221 30 1 2.4372 -4.0879 -5.0014 31 1 4.7701 -5.6045 -5.5586 32 1 4.6180 -5.3772 -7.9313 33 1 7.1205 -3.2094 -7.0031 34 1 7.5064 -4.5195 -4.9898 35 1 4.0066 0.3808 -0.2356 36 1 4.0391 2.1874 -0.0451 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17317798_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:41:28 Heat of formation + Delta-G solvation = -134.887255 kcal Electronic energy + Delta-G solvation = -25936.091375 eV Core-core repulsion = 21521.640343 eV Total energy + Delta-G solvation = -4414.451032 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.19460 -48.74430 -48.62283 -41.65994 -40.56128 -38.04604 -37.53499 -36.09912 -31.75446 -30.18883 -28.31530 -27.50575 -26.96084 -26.11457 -24.23751 -23.40451 -20.99907 -20.66787 -19.74444 -19.57091 -19.47741 -19.06021 -18.44195 -17.56104 -17.28489 -16.67023 -16.53205 -16.17378 -15.81757 -15.68804 -15.57594 -15.50909 -15.42603 -15.14439 -14.98116 -14.81332 -14.72965 -14.51996 -14.42164 -14.27198 -14.03914 -13.44725 -13.21138 -12.80904 -12.76843 -12.44664 -12.34611 -12.20503 -12.04446 -11.79060 -11.27349 -10.85581 -10.59857 -10.29072 -10.12893 -8.72188 -5.20111 -0.01378 0.11208 0.68758 1.24460 1.52953 1.59246 1.93950 1.98309 2.05423 2.07607 2.52495 2.59763 2.79217 3.14650 3.27311 3.39066 3.46824 3.55868 3.75656 4.00515 4.07290 4.12213 4.18816 4.23504 4.32980 4.42627 4.45655 4.52407 4.56971 4.66423 4.69308 4.77941 4.94657 5.12704 5.62310 5.80154 6.01987 6.60335 7.01834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.329 6.329 3 C 0.042 3.958 4 C 0.436 3.564 5 F -0.181 7.181 6 F -0.174 7.174 7 F -0.176 7.176 8 C -0.142 4.142 9 C -0.115 4.115 10 H 0.101 0.899 11 C 0.145 3.855 12 N -0.691 5.691 13 C 0.331 3.669 14 N -0.546 5.546 15 C 0.124 3.876 16 C -0.262 4.262 17 C -0.017 4.017 18 O -0.546 6.546 19 Si 0.667 3.333 20 S 0.068 5.932 21 C -0.116 4.116 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.053 0.947 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.414 0.586 30 H 0.178 0.822 31 H 0.082 0.918 32 H 0.383 0.617 33 H -0.239 1.239 34 H -0.243 1.243 35 H 0.097 0.903 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.804 -1.265 -2.523 3.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.247 6.247 3 C -0.001 4.001 4 C 0.382 3.618 5 F -0.162 7.162 6 F -0.155 7.155 7 F -0.157 7.157 8 C -0.180 4.180 9 C -0.134 4.134 10 H 0.119 0.881 11 C 0.020 3.980 12 N -0.331 5.331 13 C -0.039 4.039 14 N -0.271 5.271 15 C -0.027 4.027 16 C -0.384 4.384 17 C -0.131 4.131 18 O -0.352 6.352 19 Si 0.567 3.433 20 S 0.316 5.684 21 C -0.153 4.153 22 H 0.074 0.926 23 H 0.121 0.879 24 H 0.072 0.928 25 H 0.128 0.872 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.251 0.749 30 H 0.195 0.805 31 H 0.100 0.900 32 H 0.231 0.769 33 H -0.162 1.162 34 H -0.167 1.167 35 H 0.116 0.884 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.674 0.110 -1.830 3.243 hybrid contribution -1.216 0.106 0.543 1.336 sum 1.458 0.216 -1.288 1.958 Atomic orbital electron populations 1.23148 0.79380 1.04494 1.01471 1.88110 1.21219 1.21581 1.93789 1.23956 0.99791 0.86522 0.89832 1.21214 0.74301 0.78686 0.87637 1.93188 1.36901 1.89323 1.96834 1.93223 1.94931 1.70618 1.56761 1.93178 1.68878 1.57066 1.96587 1.23559 0.99776 1.00916 0.93726 1.22428 0.97859 0.97424 0.95650 0.88078 1.21369 0.85449 0.94345 0.96878 1.43966 1.13536 1.19540 1.56093 1.23756 0.92736 0.91913 0.95515 1.66475 1.29318 1.06757 1.24592 1.21350 0.95067 0.93672 0.92580 1.24275 0.97068 1.02423 1.14616 1.23680 1.08035 0.95855 0.85494 1.86521 1.67902 1.55740 1.25053 0.95177 0.75628 0.87353 0.85143 1.84086 1.14084 1.18360 1.51833 1.23302 0.91309 1.05534 0.95145 0.92596 0.87943 0.92811 0.87191 0.88533 0.89073 0.90950 0.74893 0.80500 0.90025 0.76949 1.16234 1.16699 0.88410 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.43 101.05 1.05 1.04 16 2 O -0.33 -0.20 8.36 -35.23 -0.29 -0.49 16 3 C 0.04 -0.03 0.85 -89.80 -0.08 -0.10 16 4 C 0.44 0.45 2.51 37.16 0.09 0.54 16 5 F -0.18 -0.26 15.24 2.25 0.03 -0.22 16 6 F -0.17 -0.51 17.09 2.25 0.04 -0.47 16 7 F -0.18 -0.17 15.82 2.25 0.04 -0.13 16 8 C -0.14 0.36 6.52 -25.92 -0.17 0.19 16 9 C -0.11 0.33 3.94 -89.81 -0.35 -0.03 16 10 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 11 C 0.14 -0.10 5.53 -4.04 -0.02 -0.12 16 12 N -0.69 0.05 5.71 -62.29 -0.36 -0.31 16 13 C 0.33 0.92 8.09 -87.68 -0.71 0.21 16 14 N -0.55 -2.35 10.14 -15.21 -0.15 -2.50 16 15 C 0.12 0.43 11.24 -19.14 -0.22 0.21 16 16 C -0.26 -0.77 5.76 -36.02 -0.21 -0.97 16 17 C -0.02 0.00 2.98 36.01 0.11 0.10 16 18 O -0.55 -0.16 12.86 -35.23 -0.45 -0.62 16 19 Si 0.67 -0.43 31.07 -169.99 -5.28 -5.71 16 20 S 0.07 0.18 20.59 -107.50 -2.21 -2.04 16 21 C -0.12 0.25 6.89 -25.91 -0.18 0.07 16 22 H 0.06 -0.12 6.76 -51.93 -0.35 -0.47 16 23 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 24 H 0.05 -0.03 6.25 -51.93 -0.32 -0.35 16 25 H 0.11 -0.37 8.06 -51.92 -0.42 -0.79 16 26 H 0.10 -0.28 6.70 -51.93 -0.35 -0.62 16 27 H 0.09 0.10 6.12 -51.93 -0.32 -0.22 16 28 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.41 -0.97 8.60 -40.82 -0.35 -1.33 16 30 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 31 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.38 -1.88 8.74 45.56 0.40 -1.48 16 33 H -0.24 -0.59 7.11 56.52 0.40 -0.19 16 34 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16 35 H 0.10 -0.15 8.10 -51.93 -0.42 -0.57 16 36 H 0.12 -0.36 7.01 -51.93 -0.36 -0.72 16 LS Contribution 322.62 15.07 4.86 4.86 Total: 0.00 -7.55 322.62 -8.26 -15.81 By element: Atomic # 1 Polarization: -5.52 SS G_CDS: -3.80 Total: -9.32 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.68 Total: 1.15 kcal Atomic # 7 Polarization: -2.30 SS G_CDS: -0.51 Total: -2.81 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -0.75 Total: -1.11 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.11 Total: -0.83 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.28 Total: -5.71 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.21 Total: -2.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -7.55 -8.26 -15.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17317798_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.082 kcal (2) G-P(sol) polarization free energy of solvation -7.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds